MELO3C029060.1 (mRNA) Melon (DHL92) v4

Overview
NameMELO3C029060.1
TypemRNA
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionGag-protease polyprotein
Locationchr01: 17625444 .. 17626527 (-)
Sequence length737
RNA-Seq ExpressionMELO3C029060.1
SyntenyMELO3C029060.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACTAAAGAAACCTCTGATTGGAGCCATTGTTATTCAAATCACATACTCTGGAATGAGTATTTTTGGCAAAAGCTGCTTTTACTTCTGGTATGAACAACTTCATTTTTATTTTCTATAGGCAAGCTTTTGGAACTTTCTTCCTTATCACTCCTACCATCCTTTTTAAAAGGTAATTAATTTTCTAATTTTAAATTCATTAATCACTATTTTCATACAACATTTCTCTCAAATAACACTTCTTTTTTTGTATGGATGTGTGGTATAAAAGAAGTAGCATGTTTATCGATAGGAGATATGTTCAAGATTTTCATGTTGGCCTTACTTGGGTAATTTTTACAACCTTTTTCTCTCTTTTTAAGATCAAAAAAGAAATTGAGTGTAATGCCCCAAATTTCGAGGTAAATCTTATCGTTTTTATGTTAATTTCGGGAATTTAAAAATTTTGGTGTTTATTTTTGGTTGGTTTTGAAGAGAAAGGAAAAAGAAAAGGAAAGGTATGAATTTTTACTAATATAATATGGTATAAATTAATATAATAATAATATAATATAAATTATATTATTATTATTATTATTATTATTATTATATATATATATATATATTTATATATATATATATATATATTTTAAAAAAAAGGAAAAACCCTAGCAAACGTGCGCGCCCGCCCCCTCCCCCCCGACTTCTTCTTCTTCTTCCTCCGTCCTTCACCTGACGCCGCCGTCCACTACCTTCATCCCTTCTTCTTCATCATTTTTGCATCACCATCGACTTCTCCGTCTCCAGCCCGATCGTTCTTCACCGTGCGCACGTCCTCGTCTTCTGCCCACGAACGGCCAGCCGCAGACGGTCCTCCTAATCGGTCATCCGATCGTTCGCAAGCCCGCCATCTTCGATGCTCCCTCTCTTCATCTCGTGCATTCGAGCAGGCCGTCGACTCCACATCCCCGACCATCAACTGGCCGCGTACGCCCAGTCGTCGTCGATGTCGATTTTTCTTCTGCCACTTTCAAATCGATTTGCATTGCACACCCGACCCGAGCCACCCTCTCTTTCAATCCGAGCCGCGAGCTGAGGATTGA

mRNA sequence

ATGGAACTAAAGAAACCTCTGATTGGAGCCATTGTTATTCAAATCACATACTCTGGAATGAGTATTTTTGGCAAAAGCTGCTTTTACTTCTGGTATGAACAACTTCATTTTTATTTTCTATAGGCAAGCTTTTGGAACTTTCTTCCTTATCACTCCTACCATCCTTTTTAAAAGAAGTAGCATGTTTATCGATAGGAGATATGTTCAAGATTTTCATGTTGGCCTTACTTGGATCAAAAAAGAAATTGAGTGTAATGCCCCAAATTTCGAGAGAAAGGAAAAAGAAAAGGAAAGGAAAAACCCTAGCAAACGTGCGCGCCCGCCCCCTCCCCCCCGACTTCTTCTTCTTCTTCCTCCGTCCTTCACCTGACGCCGCCGTCCACTACCTTCATCCCTTCTTCTTCATCATTTTTGCATCACCATCGACTTCTCCGTCTCCAGCCCGATCGTTCTTCACCGTGCGCACGTCCTCGTCTTCTGCCCACGAACGGCCAGCCGCAGACGGTCCTCCTAATCGGTCATCCGATCGTTCGCAAGCCCGCCATCTTCGATGCTCCCTCTCTTCATCTCGTGCATTCGAGCAGGCCGTCGACTCCACATCCCCGACCATCAACTGGCCGCGTACGCCCAGTCGTCGTCGATGTCGATTTTTCTTCTGCCACTTTCAAATCGATTTGCATTGCACACCCGACCCGAGCCACCCTCTCTTTCAATCCGAGCCGCGAGCTGAGGATTGA

Coding sequence (CDS)

ATGTTCAAGATTTTCATGTTGGCCTTACTTGGATCAAAAAAGAAATTGAGTGTAATGCCCCAAATTTCGAGAGAAAGGAAAAAGAAAAGGAAAGGAAAAACCCTAGCAAACGTGCGCGCCCGCCCCCTCCCCCCCGACTTCTTCTTCTTCTTCCTCCGTCCTTCACCTGACGCCGCCGTCCACTACCTTCATCCCTTCTTCTTCATCATTTTTGCATCACCATCGACTTCTCCGTCTCCAGCCCGATCGTTCTTCACCGTGCGCACGTCCTCGTCTTCTGCCCACGAACGGCCAGCCGCAGACGGTCCTCCTAATCGGTCATCCGATCGTTCGCAAGCCCGCCATCTTCGATGCTCCCTCTCTTCATCTCGTGCATTCGAGCAGGCCGTCGACTCCACATCCCCGACCATCAACTGGCCGCGTACGCCCAGTCGTCGTCGATGTCGATTTTTCTTCTGCCACTTTCAAATCGATTTGCATTGCACACCCGACCCGAGCCACCCTCTCTTTCAATCCGAGCCGCGAGCTGAGGATTGA

Protein sequence

MFKIFMLALLGSKKKLSVMPQISRERKKKRKGKTLANVRARPLPPDFFFFFLRPSPDAAVHYLHPFFFIIFASPSTSPSPARSFFTVRTSSSSAHERPAADGPPNRSSDRSQARHLRCSLSSSRAFEQAVDSTSPTINWPRTPSRRRCRFFFCHFQIDLHCTPDPSHPLFQSEPRAED
Homology
[Close]
BLAST of MELO3C029060.1 vs. NCBI nr
Match: TYK22466.1 (gag-protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 1.7e-21
Identity = 71/119 (59.66%), Postives = 75/119 (63.03%), Query Frame = 0 

Query: 39  RARPLPPDFFFFFLRPSPDAAVHYLHPFFFIIFASPSTSP-SPARSFFTVRTSSSSAHER 98
           R RPLPP                 LH FF      P   P SPARSFFTV T+SSS HER
Sbjct: 19  RRRPLPPSLL--------------LHHFF-----HPRRHPLSPARSFFTVHTTSSSVHER 78

Query: 99  PAADGPPNRSSDRSQARHLRCSLSSSRAFEQAVDSTSPTINWPRTPSRRRCRFFFCHFQ 157
           P  D P N S DRSQARH R SLSSSRA EQAVD ++PTI+ P TPSRRRCRFFFCH Q
Sbjct: 79  PIVDDPSNWSFDRSQARHRRQSLSSSRASEQAVDFSAPTIDRPLTPSRRRCRFFFCHLQ 118

[Close]
BLAST of MELO3C029060.1 vs. NCBI nr
Match: KAA0065813.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 7.3e-04
Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 0 

Query: 99  AADGPPNRSSDRSQARHLRCSLSSSRAFEQAVDSTSPTINWPRTPSRR 147
           +AD PPNRS DR Q R LR SL S RA EQAVDS+SPTI+ PR  + R
Sbjct: 55  SADDPPNRSFDRLQGRRLRRSLYSFRASEQAVDSSSPTIDRPRKGTAR 102

[Close]
BLAST of MELO3C029060.1 vs. ExPASy TrEMBL
Match: A0A5D3DFU2 (Gag-protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21746G00080 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 8.4e-22
Identity = 71/119 (59.66%), Postives = 75/119 (63.03%), Query Frame = 0 

Query: 39  RARPLPPDFFFFFLRPSPDAAVHYLHPFFFIIFASPSTSP-SPARSFFTVRTSSSSAHER 98
           R RPLPP                 LH FF      P   P SPARSFFTV T+SSS HER
Sbjct: 19  RRRPLPPSLL--------------LHHFF-----HPRRHPLSPARSFFTVHTTSSSVHER 78

Query: 99  PAADGPPNRSSDRSQARHLRCSLSSSRAFEQAVDSTSPTINWPRTPSRRRCRFFFCHFQ 157
           P  D P N S DRSQARH R SLSSSRA EQAVD ++PTI+ P TPSRRRCRFFFCH Q
Sbjct: 79  PIVDDPSNWSFDRSQARHRRQSLSSSRASEQAVDFSAPTIDRPLTPSRRRCRFFFCHLQ 118

[Close]
BLAST of MELO3C029060.1 vs. ExPASy TrEMBL
Match: A0A5A7VC73 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G001150 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.5e-04
Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 0 

Query: 99  AADGPPNRSSDRSQARHLRCSLSSSRAFEQAVDSTSPTINWPRTPSRR 147
           +AD PPNRS DR Q R LR SL S RA EQAVDS+SPTI+ PR  + R
Sbjct: 55  SADDPPNRSFDRLQGRRLRRSLYSFRASEQAVDSSSPTIDRPRKGTAR 102

The following BLAST results are available for this feature:
BLAST of MELO3C029060.1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK22466.11.7e-2159.66gag-protease polyprotein [Cucumis melo var. makuwa][more]
KAA0065813.17.3e-0464.58gag protease polyprotein [Cucumis melo var. makuwa][more]
BLAST of MELO3C029060.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C029060.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DFU28.4e-2259.66Gag-protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7VC733.5e-0464.58Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
BLAST of MELO3C029060.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..114

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C029060MELO3C029060gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C029060.1:exon:18817MELO3C029060.1:exon:18817exon
MELO3C029060.1:exon:18816MELO3C029060.1:exon:18816exon
MELO3C029060.1:exon:18815MELO3C029060.1:exon:18815exon
MELO3C029060.1:exon:18814MELO3C029060.1:exon:18814exon
MELO3C029060.1:exon:18813MELO3C029060.1:exon:18813exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C029060.1:cdsMELO3C029060.1:cdsCDS
MELO3C029060.1:cdsMELO3C029060.1:cds_2CDS
MELO3C029060.1:cdsMELO3C029060.1:cds_3CDS
MELO3C029060.1:cdsMELO3C029060.1:cds_4CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C029060.1:five_prime_utrMELO3C029060.1:five_prime_utrfive_prime_UTR
MELO3C029060.1:five_prime_utrMELO3C029060.1:five_prime_utr_2five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C029060.1MELO3C029060.1-proteinpolypeptide