Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGGTCGAATGTCCCTTTTGGGTACGAGGGATTTGCCGCTGGCAATGAAAATGATAAAGATCCTTACTATGTTTAGTCAAGGACTAAACATGTCGCCTGATGAATTTGTGGCCAGTCGACATGAGCGGTTAGGTGACGGTAGAAATGCTTCAAGTAGGTCAAAGAGGAAGAGGAGAAGTCAGCCTGTAGAGACCACGAACATAATTCAAAATGTCATGGAGTACGCCAATAGCCAGCTCAACTACATTGCAAATTGGCCGATCTTAAGGAATCAAAATGCAAGCGCAACACAGGAGGAGGTCGTTCGACAATTACAGGCCATCCTTAAACTTAGTAGAATTGAGGTGTTGCTGTATGCGTATCTTTATGCATAA
mRNA sequence
ATGTGGGGTCGAATGTCCCTTTTGGGTACGAGGGATTTGCCGCTGGCAATGAAAATGATAAAGATCCTTACTATGTTTAGTCAAGGACTAAACATGTCGCCTGATGAATTTGTGGCCAGTCGACATGAGCGGTTAGGTGACGGTAGAAATGCTTCAAGTAGGTCAAAGAGGAAGAGGAGAAGTCAGCCTGTAGAGACCACGAACATAATTCAAAATGTCATGGAGTACGCCAATAGCCAGCTCAACTACATTGCAAATTGGCCGATCTTAAGGAATCAAAATGCAAGCGCAACACAGGAGGAGGTCGTTCGACAATTACAGGCCATCCTTAAACTTAGTAGAATTGAGGTGTTGCTGTATGCGTATCTTTATGCATAA
Coding sequence (CDS)
ATGTGGGGTCGAATGTCCCTTTTGGGTACGAGGGATTTGCCGCTGGCAATGAAAATGATAAAGATCCTTACTATGTTTAGTCAAGGACTAAACATGTCGCCTGATGAATTTGTGGCCAGTCGACATGAGCGGTTAGGTGACGGTAGAAATGCTTCAAGTAGGTCAAAGAGGAAGAGGAGAAGTCAGCCTGTAGAGACCACGAACATAATTCAAAATGTCATGGAGTACGCCAATAGCCAGCTCAACTACATTGCAAATTGGCCGATCTTAAGGAATCAAAATGCAAGCGCAACACAGGAGGAGGTCGTTCGACAATTACAGGCCATCCTTAAACTTAGTAGAATTGAGGTGTTGCTGTATGCGTATCTTTATGCATAA
Protein sequence
MWGRMSLLGTRDLPLAMKMIKILTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLSRIEVLLYAYLYA
Homology
BLAST of MELO3C026091 vs. NCBI nr
Match:
KAA0042367.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15486.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 236.9 bits (603), Expect = 9.5e-59
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0
Query: 1 MWGRMSLLGTRDLPLAMKMIKILTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRR 60
MWGRMSLLGTRDLPLAMKMIKILTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRR
Sbjct: 1 MWGRMSLLGTRDLPLAMKMIKILTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRR 60
Query: 61 SQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLSRIEVLLY 120
SQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLSRIEVLLY
Sbjct: 61 SQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLSRIEVLLY 120
Query: 121 AYLYA 126
AYLYA
Sbjct: 121 AYLYA 125
BLAST of MELO3C026091 vs. NCBI nr
Match:
ADN33917.1 (hypothetical protein [Cucumis melo subsp. melo])
HSP 1 Score: 116.3 bits (290), Expect = 1.9e-22
Identity = 62/86 (72.09%), Postives = 71/86 (82.56%), Query Frame = 0
Query: 28 QGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANW 87
+GLNMSPDEF+ SR R GDGRNASSRSKRKR + +E NIIQN MEYAN QLN I +W
Sbjct: 112 KGLNMSPDEFMDSRLGRSGDGRNASSRSKRKRCGRLIEIANIIQNAMEYANDQLNRIVDW 171
Query: 88 PILRNQNASATQEEVVRQLQAILKLS 114
PILRNQ+AS TQ+EVVRQLQAI +L+
Sbjct: 172 PILRNQDASVTQQEVVRQLQAIHELN 197
BLAST of MELO3C026091 vs. NCBI nr
Match:
KAA0060635.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 112.5 bits (280), Expect = 2.7e-21
Identity = 61/86 (70.93%), Postives = 70/86 (81.40%), Query Frame = 0
Query: 28 QGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANW 87
+GLNMSPDEF+ SR R GDGRNASSR KRKR + +ET NIIQN MEYAN QLN I +W
Sbjct: 277 KGLNMSPDEFMDSRLGRSGDGRNASSRLKRKRCGRLIETANIIQNAMEYANGQLNRIVDW 336
Query: 88 PILRNQNASATQEEVVRQLQAILKLS 114
ILRNQ+AS TQ+EVVRQLQAI +L+
Sbjct: 337 LILRNQDASVTQQEVVRQLQAIHELN 362
BLAST of MELO3C026091 vs. NCBI nr
Match:
TYK02236.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 112.5 bits (280), Expect = 2.7e-21
Identity = 61/86 (70.93%), Postives = 70/86 (81.40%), Query Frame = 0
Query: 28 QGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANW 87
+GLNMSPDEF+ SR R GDGRNASSR KRKR + +ET NIIQN MEYAN QLN I +W
Sbjct: 112 KGLNMSPDEFMDSRLGRSGDGRNASSRLKRKRCGRLIETANIIQNAMEYANGQLNRIVDW 171
Query: 88 PILRNQNASATQEEVVRQLQAILKLS 114
ILRNQ+AS TQ+EVVRQLQAI +L+
Sbjct: 172 LILRNQDASVTQQEVVRQLQAIHELN 197
BLAST of MELO3C026091 vs. NCBI nr
Match:
KAA0036791.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ95858.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 98.6 bits (244), Expect = 4.1e-17
Identity = 46/93 (49.46%), Postives = 72/93 (77.42%), Query Frame = 0
Query: 24 TMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNY 83
+M+SQGLNMSPD+ + +R R+ + RN SSRSKRKR +++ NI++ +EY N QLN+
Sbjct: 142 SMYSQGLNMSPDDLMGTRIARVSERRNVSSRSKRKRPGHAIDSGNIVRTAIEYENEQLNH 201
Query: 84 IANWPILRNQNASATQEEVVRQLQAILKLSRIE 117
IA WP+L+ Q+AS T++E++RQL+AI +L+ ++
Sbjct: 202 IAEWPVLQRQDASQTRQEIIRQLEAIPELTLMD 234
BLAST of MELO3C026091 vs. ExPASy TrEMBL
Match:
A0A5A7TKY0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00690 PE=4 SV=1)
HSP 1 Score: 236.9 bits (603), Expect = 4.6e-59
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0
Query: 1 MWGRMSLLGTRDLPLAMKMIKILTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRR 60
MWGRMSLLGTRDLPLAMKMIKILTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRR
Sbjct: 1 MWGRMSLLGTRDLPLAMKMIKILTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRR 60
Query: 61 SQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLSRIEVLLY 120
SQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLSRIEVLLY
Sbjct: 61 SQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLSRIEVLLY 120
Query: 121 AYLYA 126
AYLYA
Sbjct: 121 AYLYA 125
BLAST of MELO3C026091 vs. ExPASy TrEMBL
Match:
E5GBS5 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)
HSP 1 Score: 116.3 bits (290), Expect = 9.1e-23
Identity = 62/86 (72.09%), Postives = 71/86 (82.56%), Query Frame = 0
Query: 28 QGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANW 87
+GLNMSPDEF+ SR R GDGRNASSRSKRKR + +E NIIQN MEYAN QLN I +W
Sbjct: 112 KGLNMSPDEFMDSRLGRSGDGRNASSRSKRKRCGRLIEIANIIQNAMEYANDQLNRIVDW 171
Query: 88 PILRNQNASATQEEVVRQLQAILKLS 114
PILRNQ+AS TQ+EVVRQLQAI +L+
Sbjct: 172 PILRNQDASVTQQEVVRQLQAIHELN 197
BLAST of MELO3C026091 vs. ExPASy TrEMBL
Match:
A0A5D3BVH6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00320 PE=4 SV=1)
HSP 1 Score: 112.5 bits (280), Expect = 1.3e-21
Identity = 61/86 (70.93%), Postives = 70/86 (81.40%), Query Frame = 0
Query: 28 QGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANW 87
+GLNMSPDEF+ SR R GDGRNASSR KRKR + +ET NIIQN MEYAN QLN I +W
Sbjct: 112 KGLNMSPDEFMDSRLGRSGDGRNASSRLKRKRCGRLIETANIIQNAMEYANGQLNRIVDW 171
Query: 88 PILRNQNASATQEEVVRQLQAILKLS 114
ILRNQ+AS TQ+EVVRQLQAI +L+
Sbjct: 172 LILRNQDASVTQQEVVRQLQAIHELN 197
BLAST of MELO3C026091 vs. ExPASy TrEMBL
Match:
A0A5A7V442 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005190 PE=4 SV=1)
HSP 1 Score: 112.5 bits (280), Expect = 1.3e-21
Identity = 61/86 (70.93%), Postives = 70/86 (81.40%), Query Frame = 0
Query: 28 QGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANW 87
+GLNMSPDEF+ SR R GDGRNASSR KRKR + +ET NIIQN MEYAN QLN I +W
Sbjct: 277 KGLNMSPDEFMDSRLGRSGDGRNASSRLKRKRCGRLIETANIIQNAMEYANGQLNRIVDW 336
Query: 88 PILRNQNASATQEEVVRQLQAILKLS 114
ILRNQ+AS TQ+EVVRQLQAI +L+
Sbjct: 337 LILRNQDASVTQQEVVRQLQAIHELN 362
BLAST of MELO3C026091 vs. ExPASy TrEMBL
Match:
A0A5D3BC43 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001510 PE=4 SV=1)
HSP 1 Score: 98.6 bits (244), Expect = 2.0e-17
Identity = 46/93 (49.46%), Postives = 72/93 (77.42%), Query Frame = 0
Query: 24 TMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNY 83
+M+SQGLNMSPD+ + +R R+ + RN SSRSKRKR +++ NI++ +EY N QLN+
Sbjct: 142 SMYSQGLNMSPDDLMGTRIARVSERRNVSSRSKRKRPGHAIDSGNIVRTAIEYENEQLNH 201
Query: 84 IANWPILRNQNASATQEEVVRQLQAILKLSRIE 117
IA WP+L+ Q+AS T++E++RQL+AI +L+ ++
Sbjct: 202 IAEWPVLQRQDASQTRQEIIRQLEAIPELTLMD 234
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAA0042367.1 | 9.5e-59 | 100.00 | retrotransposon protein [Cucumis melo var. makuwa] >TYK15486.1 retrotransposon p... | [more] |
| ADN33917.1 | 1.9e-22 | 72.09 | hypothetical protein [Cucumis melo subsp. melo] | [more] |
| KAA0060635.1 | 2.7e-21 | 70.93 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| TYK02236.1 | 2.7e-21 | 70.93 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0036791.1 | 4.1e-17 | 49.46 | retrotransposon protein [Cucumis melo var. makuwa] >TYJ95858.1 retrotransposon p... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7TKY0 | 4.6e-59 | 100.00 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| E5GBS5 | 9.1e-23 | 72.09 | Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1 | [more] |
| A0A5D3BVH6 | 1.3e-21 | 70.93 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7V442 | 1.3e-21 | 70.93 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5D3BC43 | 2.0e-17 | 49.46 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
