MELO3C026091 (gene) Melon (DHL92) v4

Overview


Name	MELO3C026091
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr12: 14342983 .. 14343360 (+)
RNA-Seq Expression	MELO3C026091
Synteny	MELO3C026091

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGGTCGAATGTCCCTTTTGGGTACGAGGGATTTGCCGCTGGCAATGAAAATGATAAAGATCCTTACTATGTTTAGTCAAGGACTAAACATGTCGCCTGATGAATTTGTGGCCAGTCGACATGAGCGGTTAGGTGACGGTAGAAATGCTTCAAGTAGGTCAAAGAGGAAGAGGAGAAGTCAGCCTGTAGAGACCACGAACATAATTCAAAATGTCATGGAGTACGCCAATAGCCAGCTCAACTACATTGCAAATTGGCCGATCTTAAGGAATCAAAATGCAAGCGCAACACAGGAGGAGGTCGTTCGACAATTACAGGCCATCCTTAAACTTAGTAGAATTGAGGTGTTGCTGTATGCGTATCTTTATGCATAA

mRNA sequence

ATGTGGGGTCGAATGTCCCTTTTGGGTACGAGGGATTTGCCGCTGGCAATGAAAATGATAAAGATCCTTACTATGTTTAGTCAAGGACTAAACATGTCGCCTGATGAATTTGTGGCCAGTCGACATGAGCGGTTAGGTGACGGTAGAAATGCTTCAAGTAGGTCAAAGAGGAAGAGGAGAAGTCAGCCTGTAGAGACCACGAACATAATTCAAAATGTCATGGAGTACGCCAATAGCCAGCTCAACTACATTGCAAATTGGCCGATCTTAAGGAATCAAAATGCAAGCGCAACACAGGAGGAGGTCGTTCGACAATTACAGGCCATCCTTAAACTTAGTAGAATTGAGGTGTTGCTGTATGCGTATCTTTATGCATAA

Coding sequence (CDS)

ATGTGGGGTCGAATGTCCCTTTTGGGTACGAGGGATTTGCCGCTGGCAATGAAAATGATAAAGATCCTTACTATGTTTAGTCAAGGACTAAACATGTCGCCTGATGAATTTGTGGCCAGTCGACATGAGCGGTTAGGTGACGGTAGAAATGCTTCAAGTAGGTCAAAGAGGAAGAGGAGAAGTCAGCCTGTAGAGACCACGAACATAATTCAAAATGTCATGGAGTACGCCAATAGCCAGCTCAACTACATTGCAAATTGGCCGATCTTAAGGAATCAAAATGCAAGCGCAACACAGGAGGAGGTCGTTCGACAATTACAGGCCATCCTTAAACTTAGTAGAATTGAGGTGTTGCTGTATGCGTATCTTTATGCATAA

Protein sequence

MWGRMSLLGTRDLPLAMKMIKILTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLSRIEVLLYAYLYA

Homology

[Close]

BLAST of MELO3C026091 vs. NCBI nr
Match: KAA0042367.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15486.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 236.9 bits (603), Expect = 9.5e-59
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MWGRMSLLGTRDLPLAMKMIKILTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRR 60
           MWGRMSLLGTRDLPLAMKMIKILTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRR
Sbjct: 1   MWGRMSLLGTRDLPLAMKMIKILTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRR 60

Query: 61  SQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLSRIEVLLY 120
           SQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLSRIEVLLY
Sbjct: 61  SQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLSRIEVLLY 120

Query: 121 AYLYA 126
           AYLYA
Sbjct: 121 AYLYA 125

[Close]

BLAST of MELO3C026091 vs. NCBI nr
Match: ADN33917.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 116.3 bits (290), Expect = 1.9e-22
Identity = 62/86 (72.09%), Postives = 71/86 (82.56%), Query Frame = 0


Query: 28  QGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANW 87
           +GLNMSPDEF+ SR  R GDGRNASSRSKRKR  + +E  NIIQN MEYAN QLN I +W
Sbjct: 112 KGLNMSPDEFMDSRLGRSGDGRNASSRSKRKRCGRLIEIANIIQNAMEYANDQLNRIVDW 171

Query: 88  PILRNQNASATQEEVVRQLQAILKLS 114
           PILRNQ+AS TQ+EVVRQLQAI +L+
Sbjct: 172 PILRNQDASVTQQEVVRQLQAIHELN 197

[Close]

BLAST of MELO3C026091 vs. NCBI nr
Match: KAA0060635.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 2.7e-21
Identity = 61/86 (70.93%), Postives = 70/86 (81.40%), Query Frame = 0


Query: 28  QGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANW 87
           +GLNMSPDEF+ SR  R GDGRNASSR KRKR  + +ET NIIQN MEYAN QLN I +W
Sbjct: 277 KGLNMSPDEFMDSRLGRSGDGRNASSRLKRKRCGRLIETANIIQNAMEYANGQLNRIVDW 336

Query: 88  PILRNQNASATQEEVVRQLQAILKLS 114
            ILRNQ+AS TQ+EVVRQLQAI +L+
Sbjct: 337 LILRNQDASVTQQEVVRQLQAIHELN 362

[Close]

BLAST of MELO3C026091 vs. NCBI nr
Match: TYK02236.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 2.7e-21
Identity = 61/86 (70.93%), Postives = 70/86 (81.40%), Query Frame = 0


Query: 28  QGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANW 87
           +GLNMSPDEF+ SR  R GDGRNASSR KRKR  + +ET NIIQN MEYAN QLN I +W
Sbjct: 112 KGLNMSPDEFMDSRLGRSGDGRNASSRLKRKRCGRLIETANIIQNAMEYANGQLNRIVDW 171

Query: 88  PILRNQNASATQEEVVRQLQAILKLS 114
            ILRNQ+AS TQ+EVVRQLQAI +L+
Sbjct: 172 LILRNQDASVTQQEVVRQLQAIHELN 197

[Close]

BLAST of MELO3C026091 vs. NCBI nr
Match: KAA0036791.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ95858.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 4.1e-17
Identity = 46/93 (49.46%), Postives = 72/93 (77.42%), Query Frame = 0


Query: 24  TMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNY 83
           +M+SQGLNMSPD+ + +R  R+ + RN SSRSKRKR    +++ NI++  +EY N QLN+
Sbjct: 142 SMYSQGLNMSPDDLMGTRIARVSERRNVSSRSKRKRPGHAIDSGNIVRTAIEYENEQLNH 201

Query: 84  IANWPILRNQNASATQEEVVRQLQAILKLSRIE 117
           IA WP+L+ Q+AS T++E++RQL+AI +L+ ++
Sbjct: 202 IAEWPVLQRQDASQTRQEIIRQLEAIPELTLMD 234

[Close]

BLAST of MELO3C026091 vs. ExPASy TrEMBL
Match: A0A5A7TKY0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00690 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 4.6e-59
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MWGRMSLLGTRDLPLAMKMIKILTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRR 60
           MWGRMSLLGTRDLPLAMKMIKILTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRR
Sbjct: 1   MWGRMSLLGTRDLPLAMKMIKILTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRR 60

Query: 61  SQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLSRIEVLLY 120
           SQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLSRIEVLLY
Sbjct: 61  SQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLSRIEVLLY 120

Query: 121 AYLYA 126
           AYLYA
Sbjct: 121 AYLYA 125

[Close]

BLAST of MELO3C026091 vs. ExPASy TrEMBL
Match: E5GBS5 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 9.1e-23
Identity = 62/86 (72.09%), Postives = 71/86 (82.56%), Query Frame = 0


Query: 28  QGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANW 87
           +GLNMSPDEF+ SR  R GDGRNASSRSKRKR  + +E  NIIQN MEYAN QLN I +W
Sbjct: 112 KGLNMSPDEFMDSRLGRSGDGRNASSRSKRKRCGRLIEIANIIQNAMEYANDQLNRIVDW 171

Query: 88  PILRNQNASATQEEVVRQLQAILKLS 114
           PILRNQ+AS TQ+EVVRQLQAI +L+
Sbjct: 172 PILRNQDASVTQQEVVRQLQAIHELN 197

[Close]

BLAST of MELO3C026091 vs. ExPASy TrEMBL
Match: A0A5D3BVH6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00320 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.3e-21
Identity = 61/86 (70.93%), Postives = 70/86 (81.40%), Query Frame = 0


Query: 28  QGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANW 87
           +GLNMSPDEF+ SR  R GDGRNASSR KRKR  + +ET NIIQN MEYAN QLN I +W
Sbjct: 112 KGLNMSPDEFMDSRLGRSGDGRNASSRLKRKRCGRLIETANIIQNAMEYANGQLNRIVDW 171

Query: 88  PILRNQNASATQEEVVRQLQAILKLS 114
            ILRNQ+AS TQ+EVVRQLQAI +L+
Sbjct: 172 LILRNQDASVTQQEVVRQLQAIHELN 197

[Close]

BLAST of MELO3C026091 vs. ExPASy TrEMBL
Match: A0A5A7V442 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005190 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.3e-21
Identity = 61/86 (70.93%), Postives = 70/86 (81.40%), Query Frame = 0


Query: 28  QGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANW 87
           +GLNMSPDEF+ SR  R GDGRNASSR KRKR  + +ET NIIQN MEYAN QLN I +W
Sbjct: 277 KGLNMSPDEFMDSRLGRSGDGRNASSRLKRKRCGRLIETANIIQNAMEYANGQLNRIVDW 336

Query: 88  PILRNQNASATQEEVVRQLQAILKLS 114
            ILRNQ+AS TQ+EVVRQLQAI +L+
Sbjct: 337 LILRNQDASVTQQEVVRQLQAIHELN 362

[Close]

BLAST of MELO3C026091 vs. ExPASy TrEMBL
Match: A0A5D3BC43 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001510 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.0e-17
Identity = 46/93 (49.46%), Postives = 72/93 (77.42%), Query Frame = 0


Query: 24  TMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNY 83
           +M+SQGLNMSPD+ + +R  R+ + RN SSRSKRKR    +++ NI++  +EY N QLN+
Sbjct: 142 SMYSQGLNMSPDDLMGTRIARVSERRNVSSRSKRKRPGHAIDSGNIVRTAIEYENEQLNH 201

Query: 84  IANWPILRNQNASATQEEVVRQLQAILKLSRIE 117
           IA WP+L+ Q+AS T++E++RQL+AI +L+ ++
Sbjct: 202 IAEWPVLQRQDASQTRQEIIRQLEAIPELTLMD 234

The following BLAST results are available for this feature:

BLAST of MELO3C026091 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C026091 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042367.1	9.5e-59	100.00	retrotransposon protein [Cucumis melo var. makuwa] >TYK15486.1 retrotransposon p...	[more]
ADN33917.1	1.9e-22	72.09	hypothetical protein [Cucumis melo subsp. melo]	[more]
KAA0060635.1	2.7e-21	70.93	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK02236.1	2.7e-21	70.93	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0036791.1	4.1e-17	49.46	retrotransposon protein [Cucumis melo var. makuwa] >TYJ95858.1 retrotransposon p...	[more]

BLAST of MELO3C026091 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TKY0	4.6e-59	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
E5GBS5	9.1e-23	72.09	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A5D3BVH6	1.3e-21	70.93	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V442	1.3e-21	70.93	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BC43	2.0e-17	49.46	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C026091 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C026091.1	MELO3C026091.1	mRNA