MELO3C012538 (gene) Melon (DHL92) v4

Overview
NameMELO3C012538
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionGag protease polyprotein
Locationchr01: 18368643 .. 18368948 (+)
RNA-Seq ExpressionMELO3C012538
SyntenyMELO3C012538
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAAAAGAAGGAGCGTAAAACGCCAGCCGCAGCACCTTCCTCAGCCTTCTTCTTCTTCTCCGTTCAACGCCAACCGTTGTCACATCTCTCCCCACGTTGTCGCCATCGTCCCATTCTCGTTCGAGAAAGCTATCCGCCGCCACGCTCCAATCTTTCCCCCGGACGTTGTCCGACGAAGCCAGTCGCTGTTGTCCAGATCTGCCTCTCTTATGAAGTCGGCAACAGCGTGGTGGAGCGTTCGGCGTCGTGTCTCCGGTTCTCTTTCTTCTATCACTCATTCGTCGACCGCCGGCTATCTCTGA

mRNA sequence

ATGAGAAAAAGAAGGAGCGTAAAACGCCAGCCGCAGCACCTTCCTCAGCCTTCTTCTTCTTCTCCGTTCAACGCCAACCGTTGTCACATCTCTCCCCACGTTGTCGCCATCGTCCCATTCTCGTTCGAGAAAGCTATCCGCCGCCACGCTCCAATCTTTCCCCCGGACGTTGTCCGACGAAGCCAGTCGCTGTTGTCCAGATCTGCCTCTCTTATGAAGTCGGCAACAGCGTGGTGGAGCGTTCGGCGTCGTGTCTCCGGTTCTCTTTCTTCTATCACTCATTCGTCGACCGCCGGCTATCTCTGA

Coding sequence (CDS)

ATGAGAAAAAGAAGGAGCGTAAAACGCCAGCCGCAGCACCTTCCTCAGCCTTCTTCTTCTTCTCCGTTCAACGCCAACCGTTGTCACATCTCTCCCCACGTTGTCGCCATCGTCCCATTCTCGTTCGAGAAAGCTATCCGCCGCCACGCTCCAATCTTTCCCCCGGACGTTGTCCGACGAAGCCAGTCGCTGTTGTCCAGATCTGCCTCTCTTATGAAGTCGGCAACAGCGTGGTGGAGCGTTCGGCGTCGTGTCTCCGGTTCTCTTTCTTCTATCACTCATTCGTCGACCGCCGGCTATCTCTGA

Protein sequence

MRKRRSVKRQPQHLPQPSSSSPFNANRCHISPHVVAIVPFSFEKAIRRHAPIFPPDVVRRSQSLLSRSASLMKSATAWWSVRRRVSGSLSSITHSSTAGYL
Homology
[Close]
BLAST of MELO3C012538 vs. NCBI nr
Match: KAA0041340.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 9.9e-06
Identity = 31/47 (65.96%), Postives = 33/47 (70.21%), Query Frame = 0 

Query: 14  LPQPSSSSPFNANRCHISPHVVAIVPFSFEKAIRRHAPIFPPDVVRR 61
           L   SSSSPFNA  C IS HVV +VPFS  +AIR H PIF P VVRR
Sbjct: 58  LQSSSSSSPFNATCCRISSHVVVVVPFSSAQAIRCHTPIFSPCVVRR 104

[Close]
BLAST of MELO3C012538 vs. ExPASy TrEMBL
Match: A0A5A7TDG3 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G003500 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.8e-06
Identity = 31/47 (65.96%), Postives = 33/47 (70.21%), Query Frame = 0 

Query: 14  LPQPSSSSPFNANRCHISPHVVAIVPFSFEKAIRRHAPIFPPDVVRR 61
           L   SSSSPFNA  C IS HVV +VPFS  +AIR H PIF P VVRR
Sbjct: 58  LQSSSSSSPFNATCCRISSHVVVVVPFSSAQAIRCHTPIFSPCVVRR 104

The following BLAST results are available for this feature:
BLAST of MELO3C012538 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0041340.19.9e-0665.96gag protease polyprotein [Cucumis melo var. makuwa][more]
BLAST of MELO3C012538 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C012538 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TDG34.8e-0665.96Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
BLAST of MELO3C012538 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..25

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C012538.1MELO3C012538.1mRNA