MELO3C012538.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C012538.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Gag protease polyprotein
Location	chr01: 18368643 .. 18368948 (+)
Sequence length	306
RNA-Seq Expression	MELO3C012538.1
Synteny	MELO3C012538.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAAAAGAAGGAGCGTAAAACGCCAGCCGCAGCACCTTCCTCAGCCTTCTTCTTCTTCTCCGTTCAACGCCAACCGTTGTCACATCTCTCCCCACGTTGTCGCCATCGTCCCATTCTCGTTCGAGAAAGCTATCCGCCGCCACGCTCCAATCTTTCCCCCGGACGTTGTCCGACGAAGCCAGTCGCTGTTGTCCAGATCTGCCTCTCTTATGAAGTCGGCAACAGCGTGGTGGAGCGTTCGGCGTCGTGTCTCCGGTTCTCTTTCTTCTATCACTCATTCGTCGACCGCCGGCTATCTCTGA

mRNA sequence

ATGAGAAAAAGAAGGAGCGTAAAACGCCAGCCGCAGCACCTTCCTCAGCCTTCTTCTTCTTCTCCGTTCAACGCCAACCGTTGTCACATCTCTCCCCACGTTGTCGCCATCGTCCCATTCTCGTTCGAGAAAGCTATCCGCCGCCACGCTCCAATCTTTCCCCCGGACGTTGTCCGACGAAGCCAGTCGCTGTTGTCCAGATCTGCCTCTCTTATGAAGTCGGCAACAGCGTGGTGGAGCGTTCGGCGTCGTGTCTCCGGTTCTCTTTCTTCTATCACTCATTCGTCGACCGCCGGCTATCTCTGA

Coding sequence (CDS)

ATGAGAAAAAGAAGGAGCGTAAAACGCCAGCCGCAGCACCTTCCTCAGCCTTCTTCTTCTTCTCCGTTCAACGCCAACCGTTGTCACATCTCTCCCCACGTTGTCGCCATCGTCCCATTCTCGTTCGAGAAAGCTATCCGCCGCCACGCTCCAATCTTTCCCCCGGACGTTGTCCGACGAAGCCAGTCGCTGTTGTCCAGATCTGCCTCTCTTATGAAGTCGGCAACAGCGTGGTGGAGCGTTCGGCGTCGTGTCTCCGGTTCTCTTTCTTCTATCACTCATTCGTCGACCGCCGGCTATCTCTGA

Protein sequence

MRKRRSVKRQPQHLPQPSSSSPFNANRCHISPHVVAIVPFSFEKAIRRHAPIFPPDVVRRSQSLLSRSASLMKSATAWWSVRRRVSGSLSSITHSSTAGYL

Homology

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BLAST of MELO3C012538.1 vs. NCBI nr
Match: KAA0041340.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 9.9e-06
Identity = 31/47 (65.96%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 14  LPQPSSSSPFNANRCHISPHVVAIVPFSFEKAIRRHAPIFPPDVVRR 61
           L   SSSSPFNA  C IS HVV +VPFS  +AIR H PIF P VVRR
Sbjct: 58  LQSSSSSSPFNATCCRISSHVVVVVPFSSAQAIRCHTPIFSPCVVRR 104

[Close]

BLAST of MELO3C012538.1 vs. ExPASy TrEMBL
Match: A0A5A7TDG3 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G003500 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.8e-06
Identity = 31/47 (65.96%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 14  LPQPSSSSPFNANRCHISPHVVAIVPFSFEKAIRRHAPIFPPDVVRR 61
           L   SSSSPFNA  C IS HVV +VPFS  +AIR H PIF P VVRR
Sbjct: 58  LQSSSSSSPFNATCCRISSHVVVVVPFSSAQAIRCHTPIFSPCVVRR 104

The following BLAST results are available for this feature:

BLAST of MELO3C012538.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041340.1	9.9e-06	65.96	gag protease polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C012538.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C012538.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TDG3	4.8e-06	65.96	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]

BLAST of MELO3C012538.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..25

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C012538	MELO3C012538	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C012538.1:exon:19519	MELO3C012538.1:exon:19519	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C012538.1:cds	MELO3C012538.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C012538.1	MELO3C012538.1-protein	polypeptide