Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCAGGAGAATGTACGCGCACCCTGACCTTCTCGTCCGTCTGAAGGTAGGGTTGGATCGAGTGAATCGAAGAGGAAGAGGGGAAGTCAGCGAGAGGTCAAGCTTGAAGTCATACATATGGTGTTGGAGTGTACGAACGACCAACTCAGAACGATTGCGGAGTGGCCTGCATGCGTCGTTGCCAATGATAACCATGTGCGCCAGGAATTCATCTGCATATTACGTGAGATGCCGAAACTTACAAGTTTTTGGATAGGGCATTGTTGTAAAGGCACCTCTTGTCTCGTATGGACGACATGTGGGATTTCATA
mRNA sequence
ATGTCCAGGAGAATGTACGCGCACCCTGACCTTCTCGTCCGTCTGAAGGTAGGGTTGGATCGAGTGAATCGAAGAGGAAGAGGGGAAGTCAGCGAGAGGTCAAGCTTGAAGTCATACATATGGTGTTGGAGTGTACGAACGACCAACTCAGAACGATTGCGGAGTGGCCTGCATGCGTCGTTGCCAATGATAACCATGTGCGCCAGGAATTCATCTGCATATTACGTGAGATGCCGAAACTTACAAGTTTTTGGATAGGGCATTGTTGTAAAGGCACCTCTTGTCTCGTATGGACGACATGTGGGATTTCATA
Coding sequence (CDS)
ATGTCCAGGAGAATGTACGCGCACCCTGACCTTCTCGTCCGTCTGAAGGTAGGGTTGGATCGAGTGAATCGAAGAGGAAGAGGGGAAGTCAGCGAGAGGTCAAGCTTGAAGTCATACATATGGTGTTGGAGTGTACGAACGACCAACTCAGAACGATTGCGGAGTGGCCTGCATGCGTCGTTGCCAATGATAACCATGTGCGCCAGGAATTCATCTGCATATTACGTGAGATGCCGAAACTTACAAGTTTTTGGATAG
Protein sequence
MSRRMYAHPDLLVRLKVGLDRVNRRGRGEVSERSSLKSYIWCWSVRTTNSERLRSGLHASLPMITMCARNSSAYYVRCRNLQVFG
Homology
BLAST of MELO3C008976.jh1 vs. NCBI nr
Match:
TYK23166.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 112 bits (280), Expect = 1.10e-28
Identity = 56/78 (71.79%), Postives = 62/78 (79.49%), Query Frame = 0
Query: 3 RRMYAHPDLLVRLKVGLDRVNRRGRGEVSERSSLKSYIWCWSVRTTNSERLRSGLHASLP 62
RRMY H DLL +VG DRV+RRGRGE SER+S KS+IW SVRTTNS RLRSGLHA L
Sbjct: 139 RRMYTHHDLLAHQRVGSDRVDRRGRGEASERASFKSHIWFLSVRTTNSGRLRSGLHAPLL 198
Query: 63 MITMCARNSSAYYVRCRN 80
M TMC+RNS AY VRC+N
Sbjct: 199 MTTMCSRNSYAYCVRCQN 216
BLAST of MELO3C008976.jh1 vs. NCBI nr
Match:
TYK08719.1 (hypothetical protein E5676_scaffold76G00220 [Cucumis melo var. makuwa])
HSP 1 Score: 107 bits (268), Expect = 1.04e-27
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 0
Query: 3 RRMYAHPDLLVRLKVGLDRVNRRGRGEVSERSSLKSYIWCWSVRTTNSERLRSGLHASLP 62
R MY HPDLL +VG D+V+RRGRGEVSE SSLK YIW + +T+NS RLRSG HA+L
Sbjct: 25 RTMYVHPDLLALQRVGSDQVDRRGRGEVSETSSLKRYIWGSTKQTSNSGRLRSGQHATLQ 84
Query: 63 MITMCARNSSAYYVRCRNLQVF 84
M T CARN SAY VRC+NL+V+
Sbjct: 85 MTTTCARNFSAYCVRCQNLRVW 106
BLAST of MELO3C008976.jh1 vs. NCBI nr
Match:
KAA0062452.1 (hypothetical protein E6C27_scaffold130G00330 [Cucumis melo var. makuwa])
HSP 1 Score: 106 bits (264), Expect = 8.79e-27
Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = 0
Query: 3 RRMYAHPDLLVRLKVGLDRVNRRGRGEVSERSSLKSYIWCWSVRTTNSERLRSGLHASLP 62
R MY HPDLL +VG D+V+RRGRGEVSE SSLK YIW + +T+NS RLRSG HA+L
Sbjct: 52 RTMYVHPDLLALQRVGPDQVDRRGRGEVSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQ 111
Query: 63 MITMCARNSSAYYVRCRNLQVF 84
M T CARN AY+VRC NL+V+
Sbjct: 112 MTTTCARNFFAYWVRCHNLRVW 133
BLAST of MELO3C008976.jh1 vs. NCBI nr
Match:
TYK27431.1 (hypothetical protein E5676_scaffold325G001260 [Cucumis melo var. makuwa])
HSP 1 Score: 105 bits (261), Expect = 2.50e-26
Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = 0
Query: 3 RRMYAHPDLLVRLKVGLDRVNRRGRGEVSERSSLKSYIWCWSVRTTNSERLRSGLHASLP 62
R MY HPDLL +VG D+V+RRGRGEVSE SSLK YIW + +T+NS RLRSG HA+L
Sbjct: 52 RTMYVHPDLLALQRVGPDQVDRRGRGEVSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQ 111
Query: 63 MITMCARNSSAYYVRCRNLQVF 84
M T CARN AY VRC+NL+V+
Sbjct: 112 MTTTCARNFFAYCVRCQNLRVW 133
BLAST of MELO3C008976.jh1 vs. NCBI nr
Match:
KAA0048405.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 107 bits (268), Expect = 2.89e-26
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 0
Query: 3 RRMYAHPDLLVRLKVGLDRVNRRGRGEVSERSSLKSYIWCWSVRTTNSERLRSGLHASLP 62
R MY HPDLL +VG D+V+RRGRGEVSE SSLK YIW + +T+NS RLRSG HA+L
Sbjct: 163 RTMYVHPDLLALQRVGSDQVDRRGRGEVSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQ 222
Query: 63 MITMCARNSSAYYVRCRNLQVF 84
M T CARN SAY VRC+NL+V+
Sbjct: 223 MTTTCARNFSAYCVRCQNLRVW 244
BLAST of MELO3C008976.jh1 vs. ExPASy TrEMBL
Match:
A0A5D3DHQ9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G001910 PE=4 SV=1)
HSP 1 Score: 112 bits (280), Expect = 5.34e-29
Identity = 56/78 (71.79%), Postives = 62/78 (79.49%), Query Frame = 0
Query: 3 RRMYAHPDLLVRLKVGLDRVNRRGRGEVSERSSLKSYIWCWSVRTTNSERLRSGLHASLP 62
RRMY H DLL +VG DRV+RRGRGE SER+S KS+IW SVRTTNS RLRSGLHA L
Sbjct: 139 RRMYTHHDLLAHQRVGSDRVDRRGRGEASERASFKSHIWFLSVRTTNSGRLRSGLHAPLL 198
Query: 63 MITMCARNSSAYYVRCRN 80
M TMC+RNS AY VRC+N
Sbjct: 199 MTTMCSRNSYAYCVRCQN 216
BLAST of MELO3C008976.jh1 vs. ExPASy TrEMBL
Match:
A0A5D3CED6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76G00220 PE=4 SV=1)
HSP 1 Score: 107 bits (268), Expect = 5.05e-28
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 0
Query: 3 RRMYAHPDLLVRLKVGLDRVNRRGRGEVSERSSLKSYIWCWSVRTTNSERLRSGLHASLP 62
R MY HPDLL +VG D+V+RRGRGEVSE SSLK YIW + +T+NS RLRSG HA+L
Sbjct: 25 RTMYVHPDLLALQRVGSDQVDRRGRGEVSETSSLKRYIWGSTKQTSNSGRLRSGQHATLQ 84
Query: 63 MITMCARNSSAYYVRCRNLQVF 84
M T CARN SAY VRC+NL+V+
Sbjct: 85 MTTTCARNFSAYCVRCQNLRVW 106
BLAST of MELO3C008976.jh1 vs. ExPASy TrEMBL
Match:
A0A5A7V2L2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G00330 PE=4 SV=1)
HSP 1 Score: 106 bits (264), Expect = 4.26e-27
Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = 0
Query: 3 RRMYAHPDLLVRLKVGLDRVNRRGRGEVSERSSLKSYIWCWSVRTTNSERLRSGLHASLP 62
R MY HPDLL +VG D+V+RRGRGEVSE SSLK YIW + +T+NS RLRSG HA+L
Sbjct: 52 RTMYVHPDLLALQRVGPDQVDRRGRGEVSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQ 111
Query: 63 MITMCARNSSAYYVRCRNLQVF 84
M T CARN AY+VRC NL+V+
Sbjct: 112 MTTTCARNFFAYWVRCHNLRVW 133
BLAST of MELO3C008976.jh1 vs. ExPASy TrEMBL
Match:
A0A5D3DUQ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001260 PE=4 SV=1)
HSP 1 Score: 105 bits (261), Expect = 1.21e-26
Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = 0
Query: 3 RRMYAHPDLLVRLKVGLDRVNRRGRGEVSERSSLKSYIWCWSVRTTNSERLRSGLHASLP 62
R MY HPDLL +VG D+V+RRGRGEVSE SSLK YIW + +T+NS RLRSG HA+L
Sbjct: 52 RTMYVHPDLLALQRVGPDQVDRRGRGEVSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQ 111
Query: 63 MITMCARNSSAYYVRCRNLQVF 84
M T CARN AY VRC+NL+V+
Sbjct: 112 MTTTCARNFFAYCVRCQNLRVW 133
BLAST of MELO3C008976.jh1 vs. ExPASy TrEMBL
Match:
A0A5A7U437 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G001310 PE=4 SV=1)
HSP 1 Score: 107 bits (268), Expect = 1.40e-26
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 0
Query: 3 RRMYAHPDLLVRLKVGLDRVNRRGRGEVSERSSLKSYIWCWSVRTTNSERLRSGLHASLP 62
R MY HPDLL +VG D+V+RRGRGEVSE SSLK YIW + +T+NS RLRSG HA+L
Sbjct: 163 RTMYVHPDLLALQRVGSDQVDRRGRGEVSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQ 222
Query: 63 MITMCARNSSAYYVRCRNLQVF 84
M T CARN SAY VRC+NL+V+
Sbjct: 223 MTTTCARNFSAYCVRCQNLRVW 244
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| TYK23166.1 | 1.10e-28 | 71.79 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| TYK08719.1 | 1.04e-27 | 65.85 | hypothetical protein E5676_scaffold76G00220 [Cucumis melo var. makuwa] | [more] |
| KAA0062452.1 | 8.79e-27 | 64.63 | hypothetical protein E6C27_scaffold130G00330 [Cucumis melo var. makuwa] | [more] |
| TYK27431.1 | 2.50e-26 | 64.63 | hypothetical protein E5676_scaffold325G001260 [Cucumis melo var. makuwa] | [more] |
| KAA0048405.1 | 2.89e-26 | 65.85 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3DHQ9 | 5.34e-29 | 71.79 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5D3CED6 | 5.05e-28 | 65.85 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7V2L2 | 4.26e-27 | 64.63 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5D3DUQ6 | 1.21e-26 | 64.63 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7U437 | 1.40e-26 | 65.85 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
