MELO3C008976.jh1.t1 (mRNA) Melon (Harukei-3) v1.41

Overview


Name	MELO3C008976.jh1.t1
Type	mRNA
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Retrotransposon protein
Location	chr08: 20640188 .. 20640500 (+)
Sequence length	313
RNA-Seq Expression	MELO3C008976.jh1.t1
Synteny	MELO3C008976.jh1.t1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCAGGAGAATGTACGCGCACCCTGACCTTCTCGTCCGTCTGAAGGTAGGGTTGGATCGAGTGAATCGAAGAGGAAGAGGGGAAGTCAGCGAGAGGTCAAGCTTGAAGTCATACATATGGTGTTGGAGTGTACGAACGACCAACTCAGAACGATTGCGGAGTGGCCTGCATGCGTCGTTGCCAATGATAACCATGTGCGCCAGGAATTCATCTGCATATTACGTGAGATGCCGAAACTTACAAGTTTTTGGATAGGGCATTGTTGTAAAGGCACCTCTTGTCTCGTATGGACGACATGTGGGATTTCATA

mRNA sequence

ATGTCCAGGAGAATGTACGCGCACCCTGACCTTCTCGTCCGTCTGAAGGTAGGGTTGGATCGAGTGAATCGAAGAGGAAGAGGGGAAGTCAGCGAGAGGTCAAGCTTGAAGTCATACATATGGTGTTGGAGTGTACGAACGACCAACTCAGAACGATTGCGGAGTGGCCTGCATGCGTCGTTGCCAATGATAACCATGTGCGCCAGGAATTCATCTGCATATTACGTGAGATGCCGAAACTTACAAGTTTTTGGATAGGGCATTGTTGTAAAGGCACCTCTTGTCTCGTATGGACGACATGTGGGATTTCATA

Coding sequence (CDS)

ATGTCCAGGAGAATGTACGCGCACCCTGACCTTCTCGTCCGTCTGAAGGTAGGGTTGGATCGAGTGAATCGAAGAGGAAGAGGGGAAGTCAGCGAGAGGTCAAGCTTGAAGTCATACATATGGTGTTGGAGTGTACGAACGACCAACTCAGAACGATTGCGGAGTGGCCTGCATGCGTCGTTGCCAATGATAACCATGTGCGCCAGGAATTCATCTGCATATTACGTGAGATGCCGAAACTTACAAGTTTTTGGATAG

Protein sequence

MSRRMYAHPDLLVRLKVGLDRVNRRGRGEVSERSSLKSYIWCWSVRTTNSERLRSGLHASLPMITMCARNSSAYYVRCRNLQVFG

Homology

[Close]

BLAST of MELO3C008976.jh1.t1 vs. NCBI nr
Match: TYK23166.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (280), Expect = 1.10e-28
Identity = 56/78 (71.79%), Postives = 62/78 (79.49%), Query Frame = 0


Query: 3   RRMYAHPDLLVRLKVGLDRVNRRGRGEVSERSSLKSYIWCWSVRTTNSERLRSGLHASLP 62
           RRMY H DLL   +VG DRV+RRGRGE SER+S KS+IW  SVRTTNS RLRSGLHA L 
Sbjct: 139 RRMYTHHDLLAHQRVGSDRVDRRGRGEASERASFKSHIWFLSVRTTNSGRLRSGLHAPLL 198

Query: 63  MITMCARNSSAYYVRCRN 80
           M TMC+RNS AY VRC+N
Sbjct: 199 MTTMCSRNSYAYCVRCQN 216

[Close]

BLAST of MELO3C008976.jh1.t1 vs. NCBI nr
Match: TYK08719.1 (hypothetical protein E5676_scaffold76G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (268), Expect = 1.04e-27
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 3   RRMYAHPDLLVRLKVGLDRVNRRGRGEVSERSSLKSYIWCWSVRTTNSERLRSGLHASLP 62
           R MY HPDLL   +VG D+V+RRGRGEVSE SSLK YIW  + +T+NS RLRSG HA+L 
Sbjct: 25  RTMYVHPDLLALQRVGSDQVDRRGRGEVSETSSLKRYIWGSTKQTSNSGRLRSGQHATLQ 84

Query: 63  MITMCARNSSAYYVRCRNLQVF 84
           M T CARN SAY VRC+NL+V+
Sbjct: 85  MTTTCARNFSAYCVRCQNLRVW 106

[Close]

BLAST of MELO3C008976.jh1.t1 vs. NCBI nr
Match: KAA0062452.1 (hypothetical protein E6C27_scaffold130G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 106 bits (264), Expect = 8.79e-27
Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 3   RRMYAHPDLLVRLKVGLDRVNRRGRGEVSERSSLKSYIWCWSVRTTNSERLRSGLHASLP 62
           R MY HPDLL   +VG D+V+RRGRGEVSE SSLK YIW  + +T+NS RLRSG HA+L 
Sbjct: 52  RTMYVHPDLLALQRVGPDQVDRRGRGEVSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQ 111

Query: 63  MITMCARNSSAYYVRCRNLQVF 84
           M T CARN  AY+VRC NL+V+
Sbjct: 112 MTTTCARNFFAYWVRCHNLRVW 133

[Close]

BLAST of MELO3C008976.jh1.t1 vs. NCBI nr
Match: TYK27431.1 (hypothetical protein E5676_scaffold325G001260 [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (261), Expect = 2.50e-26
Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 3   RRMYAHPDLLVRLKVGLDRVNRRGRGEVSERSSLKSYIWCWSVRTTNSERLRSGLHASLP 62
           R MY HPDLL   +VG D+V+RRGRGEVSE SSLK YIW  + +T+NS RLRSG HA+L 
Sbjct: 52  RTMYVHPDLLALQRVGPDQVDRRGRGEVSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQ 111

Query: 63  MITMCARNSSAYYVRCRNLQVF 84
           M T CARN  AY VRC+NL+V+
Sbjct: 112 MTTTCARNFFAYCVRCQNLRVW 133

[Close]

BLAST of MELO3C008976.jh1.t1 vs. NCBI nr
Match: KAA0048405.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (268), Expect = 2.89e-26
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 3   RRMYAHPDLLVRLKVGLDRVNRRGRGEVSERSSLKSYIWCWSVRTTNSERLRSGLHASLP 62
           R MY HPDLL   +VG D+V+RRGRGEVSE SSLK YIW  + +T+NS RLRSG HA+L 
Sbjct: 163 RTMYVHPDLLALQRVGSDQVDRRGRGEVSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQ 222

Query: 63  MITMCARNSSAYYVRCRNLQVF 84
           M T CARN SAY VRC+NL+V+
Sbjct: 223 MTTTCARNFSAYCVRCQNLRVW 244

[Close]

BLAST of MELO3C008976.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5D3DHQ9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G001910 PE=4 SV=1)

HSP 1 Score: 112 bits (280), Expect = 5.34e-29
Identity = 56/78 (71.79%), Postives = 62/78 (79.49%), Query Frame = 0


Query: 3   RRMYAHPDLLVRLKVGLDRVNRRGRGEVSERSSLKSYIWCWSVRTTNSERLRSGLHASLP 62
           RRMY H DLL   +VG DRV+RRGRGE SER+S KS+IW  SVRTTNS RLRSGLHA L 
Sbjct: 139 RRMYTHHDLLAHQRVGSDRVDRRGRGEASERASFKSHIWFLSVRTTNSGRLRSGLHAPLL 198

Query: 63  MITMCARNSSAYYVRCRN 80
           M TMC+RNS AY VRC+N
Sbjct: 199 MTTMCSRNSYAYCVRCQN 216

[Close]

BLAST of MELO3C008976.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5D3CED6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76G00220 PE=4 SV=1)

HSP 1 Score: 107 bits (268), Expect = 5.05e-28
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 3   RRMYAHPDLLVRLKVGLDRVNRRGRGEVSERSSLKSYIWCWSVRTTNSERLRSGLHASLP 62
           R MY HPDLL   +VG D+V+RRGRGEVSE SSLK YIW  + +T+NS RLRSG HA+L 
Sbjct: 25  RTMYVHPDLLALQRVGSDQVDRRGRGEVSETSSLKRYIWGSTKQTSNSGRLRSGQHATLQ 84

Query: 63  MITMCARNSSAYYVRCRNLQVF 84
           M T CARN SAY VRC+NL+V+
Sbjct: 85  MTTTCARNFSAYCVRCQNLRVW 106

[Close]

BLAST of MELO3C008976.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5A7V2L2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G00330 PE=4 SV=1)

HSP 1 Score: 106 bits (264), Expect = 4.26e-27
Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 3   RRMYAHPDLLVRLKVGLDRVNRRGRGEVSERSSLKSYIWCWSVRTTNSERLRSGLHASLP 62
           R MY HPDLL   +VG D+V+RRGRGEVSE SSLK YIW  + +T+NS RLRSG HA+L 
Sbjct: 52  RTMYVHPDLLALQRVGPDQVDRRGRGEVSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQ 111

Query: 63  MITMCARNSSAYYVRCRNLQVF 84
           M T CARN  AY+VRC NL+V+
Sbjct: 112 MTTTCARNFFAYWVRCHNLRVW 133

[Close]

BLAST of MELO3C008976.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5D3DUQ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001260 PE=4 SV=1)

HSP 1 Score: 105 bits (261), Expect = 1.21e-26
Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 3   RRMYAHPDLLVRLKVGLDRVNRRGRGEVSERSSLKSYIWCWSVRTTNSERLRSGLHASLP 62
           R MY HPDLL   +VG D+V+RRGRGEVSE SSLK YIW  + +T+NS RLRSG HA+L 
Sbjct: 52  RTMYVHPDLLALQRVGPDQVDRRGRGEVSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQ 111

Query: 63  MITMCARNSSAYYVRCRNLQVF 84
           M T CARN  AY VRC+NL+V+
Sbjct: 112 MTTTCARNFFAYCVRCQNLRVW 133

[Close]

BLAST of MELO3C008976.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5A7U437 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G001310 PE=4 SV=1)

HSP 1 Score: 107 bits (268), Expect = 1.40e-26
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 3   RRMYAHPDLLVRLKVGLDRVNRRGRGEVSERSSLKSYIWCWSVRTTNSERLRSGLHASLP 62
           R MY HPDLL   +VG D+V+RRGRGEVSE SSLK YIW  + +T+NS RLRSG HA+L 
Sbjct: 163 RTMYVHPDLLALQRVGSDQVDRRGRGEVSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQ 222

Query: 63  MITMCARNSSAYYVRCRNLQVF 84
           M T CARN SAY VRC+NL+V+
Sbjct: 223 MTTTCARNFSAYCVRCQNLRVW 244

The following BLAST results are available for this feature:

BLAST of MELO3C008976.jh1.t1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK23166.1	1.10e-28	71.79	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK08719.1	1.04e-27	65.85	hypothetical protein E5676_scaffold76G00220 [Cucumis melo var. makuwa]	[more]
KAA0062452.1	8.79e-27	64.63	hypothetical protein E6C27_scaffold130G00330 [Cucumis melo var. makuwa]	[more]
TYK27431.1	2.50e-26	64.63	hypothetical protein E5676_scaffold325G001260 [Cucumis melo var. makuwa]	[more]
KAA0048405.1	2.89e-26	65.85	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C008976.jh1.t1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C008976.jh1.t1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DHQ9	5.34e-29	71.79	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CED6	5.05e-28	65.85	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V2L2	4.26e-27	64.63	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DUQ6	1.21e-26	64.63	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U437	1.40e-26	65.85	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C008976.jh1.t1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C008976.jh1	MELO3C008976.jh1	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C008976.jh1.t1.exon	MELO3C008976.jh1.t1.exon	exon

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C008976.jh1.t1.start_codon	MELO3C008976.jh1.t1.start_codon	start_codon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C008976.jh1.t1.cds	MELO3C008976.jh1.t1.cds	CDS

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C008976.jh1.t1.stop_codon	MELO3C008976.jh1.t1.stop_codon	stop_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C008976.jh1.t1	MELO3C008976.jh1.t1-protein	polypeptide