Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAATTGAGGACATGAGATTTGAACATGGACTTTTGTCGTTAGATATACAGATGAACTATAATATGGTATTAGAGAGTCAAGTAGCCTTGAATTATAAAATTAACCATTCAAATCATAAATCAAATGAAATCTAAGGGATGTTTTAAATGTTTGTTAATGTGGATGTGAATGAATATATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATAAAAGGTATAAAGATTAAAGAGCAGATAGACAAAATAGGTAAAAAAATTGAGTTCAAATTCTATTGGCGCCATGAGTAATCCTATTCAAGAACACCCTTACGACCCTTTCCAATCCTTCTCCACTCTCTGTCTCAACAACTCCTCCTCCTCCTCCTCCTCCGCTGTCGACCCTTCACTCTGTTCTTCATGCTTCCGTCCTCACTCTCGCTCCACCGCCACTCCCATGAAACGCCCCTCCCCCACGCCCCCGTCTCAACAACCCTCCACCGCCCCCACTTCCAAGAACCTCCTTCTTGATCATCAACAACCCAATTCCATCCCTTTCTCCAAGATTAATCTCCCCATTCCTTTTCCTCCCTCTGTTTCCCCTCTCCGCCGCTCTCTTTCCGACCCCACCGATGCCTGCAATTTCTCCCCTCCTCCGCCGCATACTCAATCCCCGGCAAAACGGTTATGCCTAAACTCACCACTCCCTCCCCTGCCTCTCCGCCGTACTGTCTCTGACCCAAACCCAAACCCCGCCCCTGAAAAAACTTCCGATTCCCCAATTAAATTTCAGAAAGACAGCCCTGACTCGAAGGTTTGTTTGTTTGATGTATAAGATTTCCTTACATTTGTTTCATATTTCTCTTCTTCCCCCCCCCCCCCCCCCCCCCCCCCGCACCCCCCCCTTTTTAAGAACAATAAACATAAATGGGTTTTCTGTGTATTTAATTTAATTCTTTCTTGGGAAAACAGAGGCTGAGAAGAATTAAGGATCGACTGAAGGAGATGAATAAGTGGTGGAACGAAGTAATGAGTGAAGAAGAAAAACACGATGATGAAATGGAGACGAAAAAGGTATGGTTTTTGTTTTAATTATTTCATTTTTTTGGTTGGTGGAATGGTTTGTAAATTGGGTATTTAAAATACAGAGAGACAATGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAAAAGATGATGAAGAAACAGTGGGAGTGGAAAGAGTTGGAGATTCAATGACACTAAAATTGAAGTGCTCATGTGGGAAGCGATTTGAGATTCTTCTATCTGGTAGAAACTGCTTCTACAAATTGTTGTAGTTCCAACTTTTTTTTTTTTTTGTACATAATTGATTTGGTTTGAAAAGCCTAATAAAATGATGGATAAGTACAATTACACATTTGTTAACAAAGTAATAATAATATGAAATATCGTATTTCAAGC
mRNA sequence
ATGCAAATTGAGGACATGAGATTTGAACATGGACTTTTGTCGTTAGATATACAGATGAACTATAATATGAGGCTGAGAAGAATTAAGGATCGACTGAAGGAGATGAATAAGTGGTGGAACGAAGTAATGAGTGAAGAAGAAAAACACGATGATGAAATGGAGACGAAAAAGAGAGACAATGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAAAAGATGATGAAGAAACAGTGGGAGTGGAAAGAGTTGGAGATTCAATGACACTAAAATTGAAGTGCTCATGTGGGAAGCGATTTGAGATTCTTCTATCTGGTAGAAACTGCTTCTACAAATTGTTGTAGTTCCAACTTTTTTTTTTTTTTGTACATAATTGATTTGGTTTGAAAAGCCTAATAAAATGATGGATAAGTACAATTACACATTTGTTAACAAAGTAATAATAATATGAAATATCGTATTTCAAGC
Coding sequence (CDS)
ATGCAAATTGAGGACATGAGATTTGAACATGGACTTTTGTCGTTAGATATACAGATGAACTATAATATGAGGCTGAGAAGAATTAAGGATCGACTGAAGGAGATGAATAAGTGGTGGAACGAAGTAATGAGTGAAGAAGAAAAACACGATGATGAAATGGAGACGAAAAAGAGAGACAATGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAAAAGATGATGAAGAAACAGTGGGAGTGGAAAGAGTTGGAGATTCAATGACACTAAAATTGAAGTGCTCATGTGGGAAGCGATTTGAGATTCTTCTATCTGGTAGAAACTGCTTCTACAAATTGTTGTAG
Protein sequence
MQIEDMRFEHGLLSLDIQMNYNMRLRRIKDRLKEMNKWWNEVMSEEEKHDDEMETKKRDNEEEEEEEEEKEKDDEETVGVERVGDSMTLKLKCSCGKRFEILLSGRNCFYKLL
Homology
BLAST of MELO3C003414 vs. NCBI nr
Match:
XP_011652649.2 (histone H3.v1 [Cucumis sativus] >KAE8651441.1 hypothetical protein Csa_001330 [Cucumis sativus])
HSP 1 Score: 149.4 bits (376), Expect = 1.8e-32
Identity = 81/90 (90.00%), Postives = 87/90 (96.67%), Query Frame = 0
Query: 24 RLRRIKDRLKEMNKWWNEVMSEEEKHDDEMETKKRDNEEEEEEEEEKEKDDEETVGVERV 83
RL+RIKDRLKEMN WWNEVMSEEE+H+DE E KKRD+EEEEEEEEE+EKDDEETVGVERV
Sbjct: 166 RLKRIKDRLKEMNHWWNEVMSEEEEHNDEKEIKKRDDEEEEEEEEEEEKDDEETVGVERV 225
Query: 84 GDSMTLKLKCSCGKRFEILLSGRNCFYKLL 114
GDSMTLKLKCSCGKRF+ILLSGRNCFYKLL
Sbjct: 226 GDSMTLKLKCSCGKRFDILLSGRNCFYKLL 255
BLAST of MELO3C003414 vs. NCBI nr
Match:
XP_038888901.1 (uncharacterized protein LOC120078676 [Benincasa hispida])
HSP 1 Score: 112.5 bits (280), Expect = 2.5e-21
Identity = 68/90 (75.56%), Postives = 73/90 (81.11%), Query Frame = 0
Query: 24 RLRRIKDRLKEMNKWWNEVMSEEEKHDDEMETKKRDNEEEEEEEEEKEKDDEETVGVERV 83
RLRRIKDRLKEMN+WWNEVMSEE+ DE ETKK D +EEEE DEETVGVERV
Sbjct: 165 RLRRIKDRLKEMNQWWNEVMSEEQ---DENETKKSDCLKEEEE-------DEETVGVERV 224
Query: 84 GDSMTLKLKCSCGKRFEILLSGRNCFYKLL 114
GDS+ L LKCSCGK FEILLSGR+CFYKLL
Sbjct: 225 GDSLALHLKCSCGKGFEILLSGRSCFYKLL 244
BLAST of MELO3C003414 vs. NCBI nr
Match:
KAG6606253.1 (hypothetical protein SDJN03_03570, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036195.1 hypothetical protein SDJN02_02996, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 101.3 bits (251), Expect = 5.7e-18
Identity = 62/93 (66.67%), Postives = 77/93 (82.80%), Query Frame = 0
Query: 24 RLRRIKDRLKEMNKWWNEVMSEEEKHDDEMETKKRDNEEEEEEEEE---KEKDDEETVGV 83
RLR+IKDRLKEMN+WWNEVMSE+E H++E KRD + E +++ E +E+D+EETVGV
Sbjct: 178 RLRKIKDRLKEMNEWWNEVMSEQE-HEEE----KRDEKNETKKKVECCKEEEDEEETVGV 237
Query: 84 ERVGDSMTLKLKCSCGKRFEILLSGRNCFYKLL 114
ERVGDS+ L+LKC CGK FEILLSG +CFYKLL
Sbjct: 238 ERVGDSLELRLKCPCGKGFEILLSGTSCFYKLL 265
BLAST of MELO3C003414 vs. NCBI nr
Match:
XP_022930994.1 (proline-, glutamic acid- and leucine-rich protein 1-like isoform X1 [Cucurbita moschata])
HSP 1 Score: 99.4 bits (246), Expect = 2.1e-17
Identity = 61/92 (66.30%), Postives = 76/92 (82.61%), Query Frame = 0
Query: 24 RLRRIKDRLKEMNKWWNEVMSEEEKHDDEMETKKRDNEEEEEEEE--EKEKDDEETVGVE 83
RLR+IKDRLKEMN+WWNEVMSE+E H++E KRD E ++ E ++++D+EETVGVE
Sbjct: 178 RLRKIKDRLKEMNEWWNEVMSEQE-HEEE----KRDENETKKVVECCKEDEDEEETVGVE 237
Query: 84 RVGDSMTLKLKCSCGKRFEILLSGRNCFYKLL 114
RVGDS+ L+LKC CGK FEILLSG +CFYKLL
Sbjct: 238 RVGDSLELRLKCPCGKGFEILLSGTSCFYKLL 264
BLAST of MELO3C003414 vs. NCBI nr
Match:
XP_023533801.1 (proline-, glutamic acid- and leucine-rich protein 1-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 99.4 bits (246), Expect = 2.1e-17
Identity = 61/92 (66.30%), Postives = 76/92 (82.61%), Query Frame = 0
Query: 24 RLRRIKDRLKEMNKWWNEVMSEEEKHDDEMETKKRDNEEEEEEEE--EKEKDDEETVGVE 83
RLR+IKDRLKEMN+WW EVMSE+E H++E KRD E +++ E ++E+D+EETVGVE
Sbjct: 194 RLRKIKDRLKEMNEWWKEVMSEQE-HEEE----KRDENETKKKVECCKEEEDEEETVGVE 253
Query: 84 RVGDSMTLKLKCSCGKRFEILLSGRNCFYKLL 114
RVGDS+ L+LKC CGK FEILLSG +CFYKLL
Sbjct: 254 RVGDSLELRLKCPCGKGFEILLSGTSCFYKLL 280
BLAST of MELO3C003414 vs. ExPASy TrEMBL
Match:
A0A0A0LI25 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902250 PE=4 SV=1)
HSP 1 Score: 136.3 bits (342), Expect = 7.7e-29
Identity = 81/101 (80.20%), Postives = 86/101 (85.15%), Query Frame = 0
Query: 24 RLRRIKDRLKEMNKWWNEVMSEEEKHDDEMETKK-----------RDNEEEEEEEEEKEK 83
RL+RIKDRLKEMN WWNEVMSEEE+H+DE E KK RD+EEEEEEEEE EK
Sbjct: 166 RLKRIKDRLKEMNHWWNEVMSEEEEHNDEKEIKKEWFVNGVFEIQRDDEEEEEEEEE-EK 225
Query: 84 DDEETVGVERVGDSMTLKLKCSCGKRFEILLSGRNCFYKLL 114
DDEETVGVERVGDSMTLKLKCSCGKRF+ILLSGRNCFYKLL
Sbjct: 226 DDEETVGVERVGDSMTLKLKCSCGKRFDILLSGRNCFYKLL 265
BLAST of MELO3C003414 vs. ExPASy TrEMBL
Match:
A0A6J1ET23 (proline-, glutamic acid- and leucine-rich protein 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437321 PE=4 SV=1)
HSP 1 Score: 99.4 bits (246), Expect = 1.0e-17
Identity = 61/92 (66.30%), Postives = 76/92 (82.61%), Query Frame = 0
Query: 24 RLRRIKDRLKEMNKWWNEVMSEEEKHDDEMETKKRDNEEEEEEEE--EKEKDDEETVGVE 83
RLR+IKDRLKEMN+WWNEVMSE+E H++E KRD E ++ E ++++D+EETVGVE
Sbjct: 178 RLRKIKDRLKEMNEWWNEVMSEQE-HEEE----KRDENETKKVVECCKEDEDEEETVGVE 237
Query: 84 RVGDSMTLKLKCSCGKRFEILLSGRNCFYKLL 114
RVGDS+ L+LKC CGK FEILLSG +CFYKLL
Sbjct: 238 RVGDSLELRLKCPCGKGFEILLSGTSCFYKLL 264
BLAST of MELO3C003414 vs. ExPASy TrEMBL
Match:
A0A6J1JY87 (proline-, glutamic acid- and leucine-rich protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490841 PE=4 SV=1)
HSP 1 Score: 99.0 bits (245), Expect = 1.4e-17
Identity = 61/92 (66.30%), Postives = 76/92 (82.61%), Query Frame = 0
Query: 24 RLRRIKDRLKEMNKWWNEVMSEEEKHDDEMETKKRDNEEEEEEEE--EKEKDDEETVGVE 83
RLR+IK+RLKEMN+WWNEVMSE+E H++E KRD E +++ E + E+D+EETVGVE
Sbjct: 178 RLRKIKNRLKEMNEWWNEVMSEQE-HEEE----KRDENETKKKVECCKDEEDEEETVGVE 237
Query: 84 RVGDSMTLKLKCSCGKRFEILLSGRNCFYKLL 114
RVGDS+ L+LKC CGK FEILLSG +CFYKLL
Sbjct: 238 RVGDSLELRLKCPCGKGFEILLSGTSCFYKLL 264
BLAST of MELO3C003414 vs. ExPASy TrEMBL
Match:
A0A6J1EYB4 (uncharacterized protein LOC111437321 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111437321 PE=4 SV=1)
HSP 1 Score: 98.6 bits (244), Expect = 1.8e-17
Identity = 61/90 (67.78%), Postives = 76/90 (84.44%), Query Frame = 0
Query: 24 RLRRIKDRLKEMNKWWNEVMSEEEKHDDEMETKKRDNEEEEEEEEEKEKDDEETVGVERV 83
RLR+IKDRLKEMN+WWNEVMSE+E H++E KRD E E ++ ++++D+EETVGVERV
Sbjct: 178 RLRKIKDRLKEMNEWWNEVMSEQE-HEEE----KRD-ENETKKCCKEDEDEEETVGVERV 237
Query: 84 GDSMTLKLKCSCGKRFEILLSGRNCFYKLL 114
GDS+ L+LKC CGK FEILLSG +CFYKLL
Sbjct: 238 GDSLELRLKCPCGKGFEILLSGTSCFYKLL 261
BLAST of MELO3C003414 vs. ExPASy TrEMBL
Match:
A0A6J1K7B1 (proline-, glutamic acid- and leucine-rich protein 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490841 PE=4 SV=1)
HSP 1 Score: 97.1 bits (240), Expect = 5.2e-17
Identity = 61/90 (67.78%), Postives = 75/90 (83.33%), Query Frame = 0
Query: 24 RLRRIKDRLKEMNKWWNEVMSEEEKHDDEMETKKRDNEEEEEEEEEKEKDDEETVGVERV 83
RLR+IK+RLKEMN+WWNEVMSE+E H++E KRD E E ++ + E+D+EETVGVERV
Sbjct: 178 RLRKIKNRLKEMNEWWNEVMSEQE-HEEE----KRD-ENETKKCCKDEEDEEETVGVERV 237
Query: 84 GDSMTLKLKCSCGKRFEILLSGRNCFYKLL 114
GDS+ L+LKC CGK FEILLSG +CFYKLL
Sbjct: 238 GDSLELRLKCPCGKGFEILLSGTSCFYKLL 261
BLAST of MELO3C003414 vs. TAIR 10
Match:
AT2G32235.1 (unknown protein; Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa - 11; Fungi - 11; Plants - 11; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )
HSP 1 Score: 44.7 bits (104), Expect = 5.9e-05
Identity = 33/99 (33.33%), Postives = 59/99 (59.60%), Query Frame = 0
Query: 22 NMRLRRIKDRLKEMNKWWNEVMSEEE-------KHDDEMETKKRDNEEEEEEEEEKEKDD 81
N L IKD ++E+++W N+++ E K DD + +E ++EE+ K+
Sbjct: 217 NKMLYIIKDGVRELDQWCNKLLKYGEAVSSGSVKQDDSPKA-----VDEVVQQEEQPKEC 276
Query: 82 EETVGVERVGDSMTLKLKCSCGKRFEILLSGRNCFYKLL 114
+E V V R+G++ +++ C CG+ ++ L SGR+C+YKLL
Sbjct: 277 KEGVKVNRLGEAFVVEINCPCGRNYQTLFSGRDCYYKLL 310
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_011652649.2 | 1.8e-32 | 90.00 | histone H3.v1 [Cucumis sativus] >KAE8651441.1 hypothetical protein Csa_001330 [C... | [more] |
| XP_038888901.1 | 2.5e-21 | 75.56 | uncharacterized protein LOC120078676 [Benincasa hispida] | [more] |
| KAG6606253.1 | 5.7e-18 | 66.67 | hypothetical protein SDJN03_03570, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_022930994.1 | 2.1e-17 | 66.30 | proline-, glutamic acid- and leucine-rich protein 1-like isoform X1 [Cucurbita m... | [more] |
| XP_023533801.1 | 2.1e-17 | 66.30 | proline-, glutamic acid- and leucine-rich protein 1-like [Cucurbita pepo subsp. ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LI25 | 7.7e-29 | 80.20 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902250 PE=4 SV=1 | [more] |
| A0A6J1ET23 | 1.0e-17 | 66.30 | proline-, glutamic acid- and leucine-rich protein 1-like isoform X1 OS=Cucurbita... | [more] |
| A0A6J1JY87 | 1.4e-17 | 66.30 | proline-, glutamic acid- and leucine-rich protein 1-like isoform X1 OS=Cucurbita... | [more] |
| A0A6J1EYB4 | 1.8e-17 | 67.78 | uncharacterized protein LOC111437321 isoform X2 OS=Cucurbita moschata OX=3662 GN... | [more] |
| A0A6J1K7B1 | 5.2e-17 | 67.78 | proline-, glutamic acid- and leucine-rich protein 1-like isoform X2 OS=Cucurbita... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT2G32235.1 | 5.9e-05 | 33.33 | unknown protein; Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bac... | [more] |
