MELO3C003414 (gene) Melon (DHL92) v4

Overview


Name	MELO3C003414
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	proline-, glutamic acid- and leucine-rich protein 1-like isoform X1
Location	chr04: 924968 .. 926487 (+)
RNA-Seq Expression	MELO3C003414
Synteny	MELO3C003414

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAATTGAGGACATGAGATTTGAACATGGACTTTTGTCGTTAGATATACAGATGAACTATAATATGGTATTAGAGAGTCAAGTAGCCTTGAATTATAAAATTAACCATTCAAATCATAAATCAAATGAAATCTAAGGGATGTTTTAAATGTTTGTTAATGTGGATGTGAATGAATATATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATAAAAGGTATAAAGATTAAAGAGCAGATAGACAAAATAGGTAAAAAAATTGAGTTCAAATTCTATTGGCGCCATGAGTAATCCTATTCAAGAACACCCTTACGACCCTTTCCAATCCTTCTCCACTCTCTGTCTCAACAACTCCTCCTCCTCCTCCTCCTCCGCTGTCGACCCTTCACTCTGTTCTTCATGCTTCCGTCCTCACTCTCGCTCCACCGCCACTCCCATGAAACGCCCCTCCCCCACGCCCCCGTCTCAACAACCCTCCACCGCCCCCACTTCCAAGAACCTCCTTCTTGATCATCAACAACCCAATTCCATCCCTTTCTCCAAGATTAATCTCCCCATTCCTTTTCCTCCCTCTGTTTCCCCTCTCCGCCGCTCTCTTTCCGACCCCACCGATGCCTGCAATTTCTCCCCTCCTCCGCCGCATACTCAATCCCCGGCAAAACGGTTATGCCTAAACTCACCACTCCCTCCCCTGCCTCTCCGCCGTACTGTCTCTGACCCAAACCCAAACCCCGCCCCTGAAAAAACTTCCGATTCCCCAATTAAATTTCAGAAAGACAGCCCTGACTCGAAGGTTTGTTTGTTTGATGTATAAGATTTCCTTACATTTGTTTCATATTTCTCTTCTTCCCCCCCCCCCCCCCCCCCCCCCCCGCACCCCCCCCTTTTTAAGAACAATAAACATAAATGGGTTTTCTGTGTATTTAATTTAATTCTTTCTTGGGAAAACAGAGGCTGAGAAGAATTAAGGATCGACTGAAGGAGATGAATAAGTGGTGGAACGAAGTAATGAGTGAAGAAGAAAAACACGATGATGAAATGGAGACGAAAAAGGTATGGTTTTTGTTTTAATTATTTCATTTTTTTGGTTGGTGGAATGGTTTGTAAATTGGGTATTTAAAATACAGAGAGACAATGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAAAAGATGATGAAGAAACAGTGGGAGTGGAAAGAGTTGGAGATTCAATGACACTAAAATTGAAGTGCTCATGTGGGAAGCGATTTGAGATTCTTCTATCTGGTAGAAACTGCTTCTACAAATTGTTGTAGTTCCAACTTTTTTTTTTTTTTGTACATAATTGATTTGGTTTGAAAAGCCTAATAAAATGATGGATAAGTACAATTACACATTTGTTAACAAAGTAATAATAATATGAAATATCGTATTTCAAGC

mRNA sequence

ATGCAAATTGAGGACATGAGATTTGAACATGGACTTTTGTCGTTAGATATACAGATGAACTATAATATGAGGCTGAGAAGAATTAAGGATCGACTGAAGGAGATGAATAAGTGGTGGAACGAAGTAATGAGTGAAGAAGAAAAACACGATGATGAAATGGAGACGAAAAAGAGAGACAATGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAAAAGATGATGAAGAAACAGTGGGAGTGGAAAGAGTTGGAGATTCAATGACACTAAAATTGAAGTGCTCATGTGGGAAGCGATTTGAGATTCTTCTATCTGGTAGAAACTGCTTCTACAAATTGTTGTAGTTCCAACTTTTTTTTTTTTTTGTACATAATTGATTTGGTTTGAAAAGCCTAATAAAATGATGGATAAGTACAATTACACATTTGTTAACAAAGTAATAATAATATGAAATATCGTATTTCAAGC

Coding sequence (CDS)

ATGCAAATTGAGGACATGAGATTTGAACATGGACTTTTGTCGTTAGATATACAGATGAACTATAATATGAGGCTGAGAAGAATTAAGGATCGACTGAAGGAGATGAATAAGTGGTGGAACGAAGTAATGAGTGAAGAAGAAAAACACGATGATGAAATGGAGACGAAAAAGAGAGACAATGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAAAAGATGATGAAGAAACAGTGGGAGTGGAAAGAGTTGGAGATTCAATGACACTAAAATTGAAGTGCTCATGTGGGAAGCGATTTGAGATTCTTCTATCTGGTAGAAACTGCTTCTACAAATTGTTGTAG

Protein sequence

MQIEDMRFEHGLLSLDIQMNYNMRLRRIKDRLKEMNKWWNEVMSEEEKHDDEMETKKRDNEEEEEEEEEKEKDDEETVGVERVGDSMTLKLKCSCGKRFEILLSGRNCFYKLL

Homology

[Close]

BLAST of MELO3C003414 vs. NCBI nr
Match: XP_011652649.2 (histone H3.v1 [Cucumis sativus] >KAE8651441.1 hypothetical protein Csa_001330 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 1.8e-32
Identity = 81/90 (90.00%), Postives = 87/90 (96.67%), Query Frame = 0


Query: 24  RLRRIKDRLKEMNKWWNEVMSEEEKHDDEMETKKRDNEEEEEEEEEKEKDDEETVGVERV 83
           RL+RIKDRLKEMN WWNEVMSEEE+H+DE E KKRD+EEEEEEEEE+EKDDEETVGVERV
Sbjct: 166 RLKRIKDRLKEMNHWWNEVMSEEEEHNDEKEIKKRDDEEEEEEEEEEEKDDEETVGVERV 225

Query: 84  GDSMTLKLKCSCGKRFEILLSGRNCFYKLL 114
           GDSMTLKLKCSCGKRF+ILLSGRNCFYKLL
Sbjct: 226 GDSMTLKLKCSCGKRFDILLSGRNCFYKLL 255

[Close]

BLAST of MELO3C003414 vs. NCBI nr
Match: XP_038888901.1 (uncharacterized protein LOC120078676 [Benincasa hispida])

HSP 1 Score: 112.5 bits (280), Expect = 2.5e-21
Identity = 68/90 (75.56%), Postives = 73/90 (81.11%), Query Frame = 0


Query: 24  RLRRIKDRLKEMNKWWNEVMSEEEKHDDEMETKKRDNEEEEEEEEEKEKDDEETVGVERV 83
           RLRRIKDRLKEMN+WWNEVMSEE+   DE ETKK D  +EEEE       DEETVGVERV
Sbjct: 165 RLRRIKDRLKEMNQWWNEVMSEEQ---DENETKKSDCLKEEEE-------DEETVGVERV 224

Query: 84  GDSMTLKLKCSCGKRFEILLSGRNCFYKLL 114
           GDS+ L LKCSCGK FEILLSGR+CFYKLL
Sbjct: 225 GDSLALHLKCSCGKGFEILLSGRSCFYKLL 244

[Close]

BLAST of MELO3C003414 vs. NCBI nr
Match: KAG6606253.1 (hypothetical protein SDJN03_03570, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036195.1 hypothetical protein SDJN02_02996, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 101.3 bits (251), Expect = 5.7e-18
Identity = 62/93 (66.67%), Postives = 77/93 (82.80%), Query Frame = 0


Query: 24  RLRRIKDRLKEMNKWWNEVMSEEEKHDDEMETKKRDNEEEEEEEEE---KEKDDEETVGV 83
           RLR+IKDRLKEMN+WWNEVMSE+E H++E    KRD + E +++ E   +E+D+EETVGV
Sbjct: 178 RLRKIKDRLKEMNEWWNEVMSEQE-HEEE----KRDEKNETKKKVECCKEEEDEEETVGV 237

Query: 84  ERVGDSMTLKLKCSCGKRFEILLSGRNCFYKLL 114
           ERVGDS+ L+LKC CGK FEILLSG +CFYKLL
Sbjct: 238 ERVGDSLELRLKCPCGKGFEILLSGTSCFYKLL 265

[Close]

BLAST of MELO3C003414 vs. NCBI nr
Match: XP_022930994.1 (proline-, glutamic acid- and leucine-rich protein 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 99.4 bits (246), Expect = 2.1e-17
Identity = 61/92 (66.30%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 24  RLRRIKDRLKEMNKWWNEVMSEEEKHDDEMETKKRDNEEEEEEEE--EKEKDDEETVGVE 83
           RLR+IKDRLKEMN+WWNEVMSE+E H++E    KRD  E ++  E  ++++D+EETVGVE
Sbjct: 178 RLRKIKDRLKEMNEWWNEVMSEQE-HEEE----KRDENETKKVVECCKEDEDEEETVGVE 237

Query: 84  RVGDSMTLKLKCSCGKRFEILLSGRNCFYKLL 114
           RVGDS+ L+LKC CGK FEILLSG +CFYKLL
Sbjct: 238 RVGDSLELRLKCPCGKGFEILLSGTSCFYKLL 264

[Close]

BLAST of MELO3C003414 vs. NCBI nr
Match: XP_023533801.1 (proline-, glutamic acid- and leucine-rich protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 99.4 bits (246), Expect = 2.1e-17
Identity = 61/92 (66.30%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 24  RLRRIKDRLKEMNKWWNEVMSEEEKHDDEMETKKRDNEEEEEEEE--EKEKDDEETVGVE 83
           RLR+IKDRLKEMN+WW EVMSE+E H++E    KRD  E +++ E  ++E+D+EETVGVE
Sbjct: 194 RLRKIKDRLKEMNEWWKEVMSEQE-HEEE----KRDENETKKKVECCKEEEDEEETVGVE 253

Query: 84  RVGDSMTLKLKCSCGKRFEILLSGRNCFYKLL 114
           RVGDS+ L+LKC CGK FEILLSG +CFYKLL
Sbjct: 254 RVGDSLELRLKCPCGKGFEILLSGTSCFYKLL 280

[Close]

BLAST of MELO3C003414 vs. ExPASy TrEMBL
Match: A0A0A0LI25 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902250 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 7.7e-29
Identity = 81/101 (80.20%), Postives = 86/101 (85.15%), Query Frame = 0


Query: 24  RLRRIKDRLKEMNKWWNEVMSEEEKHDDEMETKK-----------RDNEEEEEEEEEKEK 83
           RL+RIKDRLKEMN WWNEVMSEEE+H+DE E KK           RD+EEEEEEEEE EK
Sbjct: 166 RLKRIKDRLKEMNHWWNEVMSEEEEHNDEKEIKKEWFVNGVFEIQRDDEEEEEEEEE-EK 225

Query: 84  DDEETVGVERVGDSMTLKLKCSCGKRFEILLSGRNCFYKLL 114
           DDEETVGVERVGDSMTLKLKCSCGKRF+ILLSGRNCFYKLL
Sbjct: 226 DDEETVGVERVGDSMTLKLKCSCGKRFDILLSGRNCFYKLL 265

[Close]

BLAST of MELO3C003414 vs. ExPASy TrEMBL
Match: A0A6J1ET23 (proline-, glutamic acid- and leucine-rich protein 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437321 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.0e-17
Identity = 61/92 (66.30%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 24  RLRRIKDRLKEMNKWWNEVMSEEEKHDDEMETKKRDNEEEEEEEE--EKEKDDEETVGVE 83
           RLR+IKDRLKEMN+WWNEVMSE+E H++E    KRD  E ++  E  ++++D+EETVGVE
Sbjct: 178 RLRKIKDRLKEMNEWWNEVMSEQE-HEEE----KRDENETKKVVECCKEDEDEEETVGVE 237

Query: 84  RVGDSMTLKLKCSCGKRFEILLSGRNCFYKLL 114
           RVGDS+ L+LKC CGK FEILLSG +CFYKLL
Sbjct: 238 RVGDSLELRLKCPCGKGFEILLSGTSCFYKLL 264

[Close]

BLAST of MELO3C003414 vs. ExPASy TrEMBL
Match: A0A6J1JY87 (proline-, glutamic acid- and leucine-rich protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490841 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.4e-17
Identity = 61/92 (66.30%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 24  RLRRIKDRLKEMNKWWNEVMSEEEKHDDEMETKKRDNEEEEEEEE--EKEKDDEETVGVE 83
           RLR+IK+RLKEMN+WWNEVMSE+E H++E    KRD  E +++ E  + E+D+EETVGVE
Sbjct: 178 RLRKIKNRLKEMNEWWNEVMSEQE-HEEE----KRDENETKKKVECCKDEEDEEETVGVE 237

Query: 84  RVGDSMTLKLKCSCGKRFEILLSGRNCFYKLL 114
           RVGDS+ L+LKC CGK FEILLSG +CFYKLL
Sbjct: 238 RVGDSLELRLKCPCGKGFEILLSGTSCFYKLL 264

[Close]

BLAST of MELO3C003414 vs. ExPASy TrEMBL
Match: A0A6J1EYB4 (uncharacterized protein LOC111437321 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111437321 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.8e-17
Identity = 61/90 (67.78%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 24  RLRRIKDRLKEMNKWWNEVMSEEEKHDDEMETKKRDNEEEEEEEEEKEKDDEETVGVERV 83
           RLR+IKDRLKEMN+WWNEVMSE+E H++E    KRD E E ++  ++++D+EETVGVERV
Sbjct: 178 RLRKIKDRLKEMNEWWNEVMSEQE-HEEE----KRD-ENETKKCCKEDEDEEETVGVERV 237

Query: 84  GDSMTLKLKCSCGKRFEILLSGRNCFYKLL 114
           GDS+ L+LKC CGK FEILLSG +CFYKLL
Sbjct: 238 GDSLELRLKCPCGKGFEILLSGTSCFYKLL 261

[Close]

BLAST of MELO3C003414 vs. ExPASy TrEMBL
Match: A0A6J1K7B1 (proline-, glutamic acid- and leucine-rich protein 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490841 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.2e-17
Identity = 61/90 (67.78%), Postives = 75/90 (83.33%), Query Frame = 0


Query: 24  RLRRIKDRLKEMNKWWNEVMSEEEKHDDEMETKKRDNEEEEEEEEEKEKDDEETVGVERV 83
           RLR+IK+RLKEMN+WWNEVMSE+E H++E    KRD E E ++  + E+D+EETVGVERV
Sbjct: 178 RLRKIKNRLKEMNEWWNEVMSEQE-HEEE----KRD-ENETKKCCKDEEDEEETVGVERV 237

Query: 84  GDSMTLKLKCSCGKRFEILLSGRNCFYKLL 114
           GDS+ L+LKC CGK FEILLSG +CFYKLL
Sbjct: 238 GDSLELRLKCPCGKGFEILLSGTSCFYKLL 261

[Close]

BLAST of MELO3C003414 vs. TAIR 10
Match: AT2G32235.1 (unknown protein; Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa - 11; Fungi - 11; Plants - 11; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 5.9e-05
Identity = 33/99 (33.33%), Postives = 59/99 (59.60%), Query Frame = 0


Query: 22  NMRLRRIKDRLKEMNKWWNEVMSEEE-------KHDDEMETKKRDNEEEEEEEEEKEKDD 81
           N  L  IKD ++E+++W N+++   E       K DD  +       +E  ++EE+ K+ 
Sbjct: 217 NKMLYIIKDGVRELDQWCNKLLKYGEAVSSGSVKQDDSPKA-----VDEVVQQEEQPKEC 276

Query: 82  EETVGVERVGDSMTLKLKCSCGKRFEILLSGRNCFYKLL 114
           +E V V R+G++  +++ C CG+ ++ L SGR+C+YKLL
Sbjct: 277 KEGVKVNRLGEAFVVEINCPCGRNYQTLFSGRDCYYKLL 310

The following BLAST results are available for this feature:

BLAST of MELO3C003414 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652649.2	1.8e-32	90.00	histone H3.v1 [Cucumis sativus] >KAE8651441.1 hypothetical protein Csa_001330 [C...	[more]
XP_038888901.1	2.5e-21	75.56	uncharacterized protein LOC120078676 [Benincasa hispida]	[more]
KAG6606253.1	5.7e-18	66.67	hypothetical protein SDJN03_03570, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022930994.1	2.1e-17	66.30	proline-, glutamic acid- and leucine-rich protein 1-like isoform X1 [Cucurbita m...	[more]
XP_023533801.1	2.1e-17	66.30	proline-, glutamic acid- and leucine-rich protein 1-like [Cucurbita pepo subsp. ...	[more]

BLAST of MELO3C003414 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C003414 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LI25	7.7e-29	80.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902250 PE=4 SV=1	[more]
A0A6J1ET23	1.0e-17	66.30	proline-, glutamic acid- and leucine-rich protein 1-like isoform X1 OS=Cucurbita...	[more]
A0A6J1JY87	1.4e-17	66.30	proline-, glutamic acid- and leucine-rich protein 1-like isoform X1 OS=Cucurbita...	[more]
A0A6J1EYB4	1.8e-17	67.78	uncharacterized protein LOC111437321 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1K7B1	5.2e-17	67.78	proline-, glutamic acid- and leucine-rich protein 1-like isoform X2 OS=Cucurbita...	[more]

BLAST of MELO3C003414 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32235.1	5.9e-05	33.33	unknown protein; Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 46..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003414.1	MELO3C003414.1	mRNA