MELO3C002578 (gene) Melon (DHL92) v4

Overview


Name	MELO3C002578
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Polyphenol oxidase
Location	chr12: 21667473 .. 21667790 (+)
RNA-Seq Expression	MELO3C002578
Synteny	MELO3C002578

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAAGCTGAACACGTCTGCGTCTATGTTCGTGACTCTCTCGACACCAAAAAAACTCGGCTACTTCTTCCAATCTGTCGACATCCCATGGCTCAAAGCTCCCCCCAAGCCTCACAACAAGTCCAAGAAGTCTATCGCTGCTAGCATTGTCCCGTTCGGTGTTGGTGCAGCCCTTGCTGAACCGAAGTCGATACAAGATAGGTGCTGGCATTTGATTGGACTACACTTGGGACATACCAACATAGGTGCATTCAACGGAGTGCTCGAGTATTTTCCTTTAGGTCATAGCCTTCCAAGATATTTACTGAATAACTAA

mRNA sequence

ATGAGAAAGCTGAACACGTCTGCGTCTATGTTCGTGACTCTCTCGACACCAAAAAAACTCGGCTACTTCTTCCAATCTGTCGACATCCCATGGCTCAAAGCTCCCCCCAAGCCTCACAACAAGTCCAAGAAGTCTATCGCTGCTAGCATTGTCCCGTTCGGTGTTGGTGCAGCCCTTGCTGAACCGAAGTCGATACAAGATAGGTGCTGGCATTTGATTGGACTACACTTGGGACATACCAACATAGGTGCATTCAACGGAGTGCTCGAGTATTTTCCTTTAGGTCATAGCCTTCCAAGATATTTACTGAATAACTAA

Coding sequence (CDS)

ATGAGAAAGCTGAACACGTCTGCGTCTATGTTCGTGACTCTCTCGACACCAAAAAAACTCGGCTACTTCTTCCAATCTGTCGACATCCCATGGCTCAAAGCTCCCCCCAAGCCTCACAACAAGTCCAAGAAGTCTATCGCTGCTAGCATTGTCCCGTTCGGTGTTGGTGCAGCCCTTGCTGAACCGAAGTCGATACAAGATAGGTGCTGGCATTTGATTGGACTACACTTGGGACATACCAACATAGGTGCATTCAACGGAGTGCTCGAGTATTTTCCTTTAGGTCATAGCCTTCCAAGATATTTACTGAATAACTAA

Protein sequence

MRKLNTSASMFVTLSTPKKLGYFFQSVDIPWLKAPPKPHNKSKKSIAASIVPFGVGAALAEPKSIQDRCWHLIGLHLGHTNIGAFNGVLEYFPLGHSLPRYLLNN

Homology

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BLAST of MELO3C002578 vs. NCBI nr
Match: KAA0056966.1 (polyphenol oxidase [Cucumis melo var. makuwa] >TYK09748.1 polyphenol oxidase [Cucumis melo var. makuwa])

HSP 1 Score: 222.6 bits (566), Expect = 1.6e-54
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MRKLNTSASMFVTLSTPKKLGYFFQSVDIPWLKAPPKPHNKSKKSIAASIVPFGVGAALA 60
           MRKLNTSASMFVTLSTPKKLGYFFQSVDIPWLKAPPKPHNKSKKSIAASIVPFGVGAALA
Sbjct: 1   MRKLNTSASMFVTLSTPKKLGYFFQSVDIPWLKAPPKPHNKSKKSIAASIVPFGVGAALA 60

Query: 61  EPKSIQDRCWHLIGLHLGHTNIGAFNGVLEYFPLGHSLPRYLLNN 106
           EPKSIQDRCWHLIGLHLGHTNIGAFNGVLEYFPLGHSLPRYLLNN
Sbjct: 61  EPKSIQDRCWHLIGLHLGHTNIGAFNGVLEYFPLGHSLPRYLLNN 105

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BLAST of MELO3C002578 vs. NCBI nr
Match: XP_031739004.1 (polyphenol oxidase C, chloroplastic-like [Cucumis sativus] >KGN64653.1 hypothetical protein Csa_013139 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 4.0e-10
Identity = 42/55 (76.36%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 18  KKLGYFFQSVDIPWLKAPPKPHN---KSKKSIAASIVPFGVGAALAE-PKSIQDR 69
           KKLGY FQS+DIPWLK+ PKP N   KSKKSIAASIVPFGVGAAL E  KSI  R
Sbjct: 80  KKLGYVFQSIDIPWLKSRPKPLNKKVKSKKSIAASIVPFGVGAALDEKAKSIHLR 134

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BLAST of MELO3C002578 vs. NCBI nr
Match: AKN08990.1 (polyphenol oxidase [Luffa aegyptiaca])

HSP 1 Score: 58.9 bits (141), Expect = 3.0e-05
Identity = 30/50 (60.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 18  KKLGYFFQSVDIPWLKAPPKPHNKSK---KSIAASIVPFGVGAALAEPKS 65
           K LGY +Q  DIPW+K  P   NK K   K   AS VPFGVGAALAEP S
Sbjct: 404 KNLGYVYQDADIPWIKTRPTKRNKPKKKPKKQVASTVPFGVGAALAEPIS 453

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BLAST of MELO3C002578 vs. NCBI nr
Match: TKY59315.1 (Polyphenol oxidase [Spatholobus suberectus])

HSP 1 Score: 55.8 bits (133), Expect = 2.5e-04
Identity = 27/55 (49.09%), Postives = 32/55 (58.18%), Query Frame = 0


Query: 12  VTLSTPKKLGYFFQSVDIPWLKAPPKPHNKSKKSIAASIVPFGVGAALAEPKSIQ 67
           + L+   KLGY +Q VDIPWL   PKP  KSK    A    FG+GAA A   S+Q
Sbjct: 243 IALTQEIKLGYVYQDVDIPWLNNKPKPRRKSKGKKVALAQDFGIGAAQAAEASVQ 297

[Close]

BLAST of MELO3C002578 vs. NCBI nr
Match: TKY59313.1 (Polyphenol oxidase [Spatholobus suberectus])

HSP 1 Score: 55.8 bits (133), Expect = 2.5e-04
Identity = 27/55 (49.09%), Postives = 32/55 (58.18%), Query Frame = 0


Query: 12  VTLSTPKKLGYFFQSVDIPWLKAPPKPHNKSKKSIAASIVPFGVGAALAEPKSIQ 67
           + L+   KLGY +Q VDIPWL   PKP  KSK    A    FG+GAA A   S+Q
Sbjct: 243 IALTREIKLGYVYQDVDIPWLNNKPKPRRKSKGKKVALAQDFGIGAAQAAEASVQ 297

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BLAST of MELO3C002578 vs. ExPASy TrEMBL
Match: A0A5D3CEU3 (Polyphenol oxidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25005G00010 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 7.6e-55
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MRKLNTSASMFVTLSTPKKLGYFFQSVDIPWLKAPPKPHNKSKKSIAASIVPFGVGAALA 60
           MRKLNTSASMFVTLSTPKKLGYFFQSVDIPWLKAPPKPHNKSKKSIAASIVPFGVGAALA
Sbjct: 1   MRKLNTSASMFVTLSTPKKLGYFFQSVDIPWLKAPPKPHNKSKKSIAASIVPFGVGAALA 60

Query: 61  EPKSIQDRCWHLIGLHLGHTNIGAFNGVLEYFPLGHSLPRYLLNN 106
           EPKSIQDRCWHLIGLHLGHTNIGAFNGVLEYFPLGHSLPRYLLNN
Sbjct: 61  EPKSIQDRCWHLIGLHLGHTNIGAFNGVLEYFPLGHSLPRYLLNN 105

[Close]

BLAST of MELO3C002578 vs. ExPASy TrEMBL
Match: A0A0A0LSA5 (PPO1_DWL domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G073610 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.0e-10
Identity = 42/55 (76.36%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 18  KKLGYFFQSVDIPWLKAPPKPHN---KSKKSIAASIVPFGVGAALAE-PKSIQDR 69
           KKLGY FQS+DIPWLK+ PKP N   KSKKSIAASIVPFGVGAAL E  KSI  R
Sbjct: 80  KKLGYVFQSIDIPWLKSRPKPLNKKVKSKKSIAASIVPFGVGAALDEKAKSIHLR 134

[Close]

BLAST of MELO3C002578 vs. ExPASy TrEMBL
Match: A0A0U2D7M5 (Polyphenol oxidase OS=Luffa aegyptiaca OX=3670 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-05
Identity = 30/50 (60.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 18  KKLGYFFQSVDIPWLKAPPKPHNKSK---KSIAASIVPFGVGAALAEPKS 65
           K LGY +Q  DIPW+K  P   NK K   K   AS VPFGVGAALAEP S
Sbjct: 404 KNLGYVYQDADIPWIKTRPTKRNKPKKKPKKQVASTVPFGVGAALAEPIS 453

The following BLAST results are available for this feature:

BLAST of MELO3C002578 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C002578 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056966.1	1.6e-54	100.00	polyphenol oxidase [Cucumis melo var. makuwa] >TYK09748.1 polyphenol oxidase [Cu...	[more]
XP_031739004.1	4.0e-10	76.36	polyphenol oxidase C, chloroplastic-like [Cucumis sativus] >KGN64653.1 hypotheti...	[more]
AKN08990.1	3.0e-05	60.00	polyphenol oxidase [Luffa aegyptiaca]	[more]
TKY59315.1	2.5e-04	49.09	Polyphenol oxidase [Spatholobus suberectus]	[more]
TKY59313.1	2.5e-04	49.09	Polyphenol oxidase [Spatholobus suberectus]	[more]

BLAST of MELO3C002578 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CEU3	7.6e-55	100.00	Polyphenol oxidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25005...	[more]
A0A0A0LSA5	2.0e-10	76.36	PPO1_DWL domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G073610 PE...	[more]
A0A0U2D7M5	1.4e-05	60.00	Polyphenol oxidase OS=Luffa aegyptiaca OX=3670 PE=2 SV=1	[more]

BLAST of MELO3C002578 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C002578.1	MELO3C002578.1	mRNA