Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTAGAATGTTGGAATTGTGGTATGACAGGATATTTGAGGAGAAACTGCAAAGCCACAAAGAAAGCTGAGGGGAAAGAAGCTAATGCAAATGTTGTCGCTGAAGAAATACATGATGCTCTAGTTCTTGTTGTTGATGGCACTAATGACACATGGGGGGTGAATTCAGGTGCGCATACTACAGGACAATGTGACATTCTTGAAAATTATGTTGCAGAAAATCATGGAAAGGTGTATTTTGCTGATGTAGAGCCTTTGAACATCATTGAGATTGGTGACGTTAATTTAAAAATGACGAACGATTCAGTTTGAAAGATTTGCAAGGTACATCACGTCCAGAATATGATGAAGAATCTGATTTCTGTGGGGCAATTGGATGATGAAGGATGTCAAATATCATTCGGTCAAAGAAACTGGAAAGTTATAAAGGATTCCATGGTGATCGCTCGAGGAAGAAAGTTAGGAACTTTGTATGTCAACAGCAATGTCAAAGAAATGGTGGCTATATATTGTAGATCATTCGAGTCAGACACAATTATGGCACAGTAAGTTGGGACATATGAGTAAAAAAGATATGAAAATTCTTCAAAGGGAAGTTAGGA
mRNA sequence
ATGACAGGATATTTGAGGAGAAACTGCAAAGCCACAAAGAAAGCTGAGGGGAAAGAAGCTAATGCAAATGTTGTCGCTGAAGAAATACATGATGCTCTAGTTCTTGTTGTTGATGGCACTAATGACACATGGGGGGTGAATTCAGGTGCGCATACTACAGGACAATGTGACATTCTTGAAAATTATGTTGCAGAAAATCATGGAAAGGTGTATTTTGCTGATGTAGAGCCTTTGAACATCATTGAGATTGGTGACGTTAATTTAAAAATGACGAACGATTCAGTTTGA
Coding sequence (CDS)
ATGACAGGATATTTGAGGAGAAACTGCAAAGCCACAAAGAAAGCTGAGGGGAAAGAAGCTAATGCAAATGTTGTCGCTGAAGAAATACATGATGCTCTAGTTCTTGTTGTTGATGGCACTAATGACACATGGGGGGTGAATTCAGGTGCGCATACTACAGGACAATGTGACATTCTTGAAAATTATGTTGCAGAAAATCATGGAAAGGTGTATTTTGCTGATGTAGAGCCTTTGAACATCATTGAGATTGGTGACGTTAATTTAAAAATGACGAACGATTCAGTTTGA
Protein sequence
MTGYLRRNCKATKKAEGKEANANVVAEEIHDALVLVVDGTNDTWGVNSGAHTTGQCDILENYVAENHGKVYFADVEPLNIIEIGDVNLKMTNDSV
Homology
BLAST of MC11g_new0234 vs. NCBI nr
Match:
PON60333.1 (Zinc finger, CCHC-type [Parasponia andersonii])
HSP 1 Score: 105 bits (262), Expect = 2.23e-24
Identity = 48/96 (50.00%), Postives = 72/96 (75.00%), Query Frame = 0
Query: 2 TGYLRRNCKATKKAEGKEANANVVAEEIHDALVLVVDGTNDTWGVNSGA--HTTGQCDIL 61
TG++++NC+A +K + + +AN + +E+ DAL+L VD D+W ++SGA HTT D+L
Sbjct: 244 TGHIKKNCRAPRKDDSRN-DANAITDEVQDALLLSVDNPIDSWVLDSGASFHTTAHRDVL 303
Query: 62 ENYVAENHGKVYFADVEPLNIIEIGDVNLKMTNDSV 95
ENY+A N+GKVY AD EPL+I+ +GD+ LKM+N SV
Sbjct: 304 ENYIAGNYGKVYLADGEPLDIVGMGDIRLKMSNGSV 338
BLAST of MC11g_new0234 vs. NCBI nr
Match:
PON63051.1 (Zinc finger, CCHC-type [Trema orientale])
HSP 1 Score: 104 bits (259), Expect = 4.10e-24
Identity = 49/96 (51.04%), Postives = 72/96 (75.00%), Query Frame = 0
Query: 2 TGYLRRNCKATKKAEGKEANANVVAEEIHDALVLVVDGTNDTWGVNSGA--HTTGQCDIL 61
TG++++NC+A +K + + +AN V +E+ DAL+L VD D+W ++SGA HTT ++L
Sbjct: 244 TGHIKKNCRAPRKDDSRN-DANAVTDEVQDALLLSVDNPIDSWVLDSGASFHTTAHRNVL 303
Query: 62 ENYVAENHGKVYFADVEPLNIIEIGDVNLKMTNDSV 95
ENYVA N+GKVY AD EPL+I+ +GD+ LKM+N SV
Sbjct: 304 ENYVAGNYGKVYLADGEPLDIVGMGDIRLKMSNGSV 338
BLAST of MC11g_new0234 vs. NCBI nr
Match:
PON72113.1 (hypothetical protein PanWU01x14_069550, partial [Parasponia andersonii])
HSP 1 Score: 97.1 bits (240), Expect = 4.24e-23
Identity = 49/93 (52.69%), Postives = 67/93 (72.04%), Query Frame = 0
Query: 5 LRRNCKATKKAEGKEANANVVAEEIHDALVLVVDGTNDTWGVNSGA--HTTGQCDILENY 64
L+ NC+A +K + + +ANVV +E+ DAL+L VD ++W ++SGA HTT D+ ENY
Sbjct: 10 LKGNCRAPRKDDNRN-DANVVTDEVQDALLLSVDNQINSWVLDSGASFHTTAHRDVPENY 69
Query: 65 VAENHGKVYFADVEPLNIIEIGDVNLKMTNDSV 95
V N+GKVY AD EPLNII +GD+ LKM+N SV
Sbjct: 70 VIGNYGKVYVADGEPLNIIGMGDIRLKMSNGSV 101
BLAST of MC11g_new0234 vs. NCBI nr
Match:
KAG6529732.1 (hypothetical protein ZIOFF_011946 [Zingiber officinale])
HSP 1 Score: 95.9 bits (237), Expect = 9.08e-22
Identity = 48/97 (49.48%), Postives = 66/97 (68.04%), Query Frame = 0
Query: 3 GYLRRNCKATKKAEGKEAN--ANVVAEEIHDALVLVVDGTNDTWGVNSGA--HTTGQCDI 62
G++++ C KK + K AN V EE+ DAL+L +DG D+W ++SGA HTT Q +I
Sbjct: 103 GHMKKVCTTPKKNKNKNKGNVANAVTEEVQDALLLSIDGPIDSWVLDSGASFHTTAQREI 162
Query: 63 LENYVAENHGKVYFADVEPLNIIEIGDVNLKMTNDSV 95
LEN+V NHGKVY AD EPL+I+ I ++LKM+N V
Sbjct: 163 LENFVVGNHGKVYLADGEPLDIVGIESIHLKMSNGVV 199
BLAST of MC11g_new0234 vs. NCBI nr
Match:
XP_022152845.1 (uncharacterized protein LOC111020469 [Momordica charantia])
HSP 1 Score: 97.4 bits (241), Expect = 4.33e-21
Identity = 52/93 (55.91%), Postives = 63/93 (67.74%), Query Frame = 0
Query: 3 GYLRRNCKATKKAEGKEANANVVAEEIHDALVLVVDGTNDTWGVNSGAHTTGQCDILENY 62
G+L+ NCKA KK EG EA+ANV AE+IHDALV+ V+ +DTW ++SG
Sbjct: 789 GHLKSNCKAPKKNEGNEADANV-AEQIHDALVIAVESAHDTWVMDSG------------- 848
Query: 63 VAENHGKVYFADVEPLNIIEIGDVNLKMTNDSV 95
NHGKVY AD EPL+II IG+VNLKM N SV
Sbjct: 849 ---NHGKVYLADGEPLDIIGIGEVNLKMANGSV 864
BLAST of MC11g_new0234 vs. ExPASy TrEMBL
Match:
A0A2P5CH01 (Zinc finger, CCHC-type OS=Parasponia andersonii OX=3476 GN=PanWU01x14_153190 PE=4 SV=1)
HSP 1 Score: 105 bits (262), Expect = 1.08e-24
Identity = 48/96 (50.00%), Postives = 72/96 (75.00%), Query Frame = 0
Query: 2 TGYLRRNCKATKKAEGKEANANVVAEEIHDALVLVVDGTNDTWGVNSGA--HTTGQCDIL 61
TG++++NC+A +K + + +AN + +E+ DAL+L VD D+W ++SGA HTT D+L
Sbjct: 244 TGHIKKNCRAPRKDDSRN-DANAITDEVQDALLLSVDNPIDSWVLDSGASFHTTAHRDVL 303
Query: 62 ENYVAENHGKVYFADVEPLNIIEIGDVNLKMTNDSV 95
ENY+A N+GKVY AD EPL+I+ +GD+ LKM+N SV
Sbjct: 304 ENYIAGNYGKVYLADGEPLDIVGMGDIRLKMSNGSV 338
BLAST of MC11g_new0234 vs. ExPASy TrEMBL
Match:
A0A2P5CPV0 (Zinc finger, CCHC-type OS=Trema orientale OX=63057 GN=TorRG33x02_277340 PE=4 SV=1)
HSP 1 Score: 104 bits (259), Expect = 1.98e-24
Identity = 49/96 (51.04%), Postives = 72/96 (75.00%), Query Frame = 0
Query: 2 TGYLRRNCKATKKAEGKEANANVVAEEIHDALVLVVDGTNDTWGVNSGA--HTTGQCDIL 61
TG++++NC+A +K + + +AN V +E+ DAL+L VD D+W ++SGA HTT ++L
Sbjct: 244 TGHIKKNCRAPRKDDSRN-DANAVTDEVQDALLLSVDNPIDSWVLDSGASFHTTAHRNVL 303
Query: 62 ENYVAENHGKVYFADVEPLNIIEIGDVNLKMTNDSV 95
ENYVA N+GKVY AD EPL+I+ +GD+ LKM+N SV
Sbjct: 304 ENYVAGNYGKVYLADGEPLDIVGMGDIRLKMSNGSV 338
BLAST of MC11g_new0234 vs. ExPASy TrEMBL
Match:
A0A2P5DFR2 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_069550 PE=4 SV=1)
HSP 1 Score: 97.1 bits (240), Expect = 2.05e-23
Identity = 49/93 (52.69%), Postives = 67/93 (72.04%), Query Frame = 0
Query: 5 LRRNCKATKKAEGKEANANVVAEEIHDALVLVVDGTNDTWGVNSGA--HTTGQCDILENY 64
L+ NC+A +K + + +ANVV +E+ DAL+L VD ++W ++SGA HTT D+ ENY
Sbjct: 10 LKGNCRAPRKDDNRN-DANVVTDEVQDALLLSVDNQINSWVLDSGASFHTTAHRDVPENY 69
Query: 65 VAENHGKVYFADVEPLNIIEIGDVNLKMTNDSV 95
V N+GKVY AD EPLNII +GD+ LKM+N SV
Sbjct: 70 VIGNYGKVYVADGEPLNIIGMGDIRLKMSNGSV 101
BLAST of MC11g_new0234 vs. ExPASy TrEMBL
Match:
A0A6J1DF43 (uncharacterized protein LOC111020469 OS=Momordica charantia OX=3673 GN=LOC111020469 PE=4 SV=1)
HSP 1 Score: 97.4 bits (241), Expect = 2.10e-21
Identity = 52/93 (55.91%), Postives = 63/93 (67.74%), Query Frame = 0
Query: 3 GYLRRNCKATKKAEGKEANANVVAEEIHDALVLVVDGTNDTWGVNSGAHTTGQCDILENY 62
G+L+ NCKA KK EG EA+ANV AE+IHDALV+ V+ +DTW ++SG
Sbjct: 789 GHLKSNCKAPKKNEGNEADANV-AEQIHDALVIAVESAHDTWVMDSG------------- 848
Query: 63 VAENHGKVYFADVEPLNIIEIGDVNLKMTNDSV 95
NHGKVY AD EPL+II IG+VNLKM N SV
Sbjct: 849 ---NHGKVYLADGEPLDIIGIGEVNLKMANGSV 864
BLAST of MC11g_new0234 vs. ExPASy TrEMBL
Match:
A0A438KBI6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_8 PE=4 SV=1)
HSP 1 Score: 95.5 bits (236), Expect = 4.40e-21
Identity = 47/96 (48.96%), Postives = 68/96 (70.83%), Query Frame = 0
Query: 2 TGYLRRNCKATKKAEGKEANANVVAEEIHDALVLVVDGTNDTWGVNSGA--HTTGQCDIL 61
TG+ +R CK+ KK + ++ +ANVV E++HDAL+LVVD D W ++SGA HTT +I+
Sbjct: 199 TGHFKRQCKSPKK-KNEDDSANVVTEKVHDALLLVVDSPLDDWVLDSGASFHTTPHREII 258
Query: 62 ENYVAENHGKVYFADVEPLNIIEIGDVNLKMTNDSV 95
+NYVA + GKVY AD L+++ IGDV + + N SV
Sbjct: 259 QNYVAGDFGKVYLADGSTLDVVGIGDVRISLPNRSV 293
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| PON60333.1 | 2.23e-24 | 50.00 | Zinc finger, CCHC-type [Parasponia andersonii] | [more] |
| PON63051.1 | 4.10e-24 | 51.04 | Zinc finger, CCHC-type [Trema orientale] | [more] |
| PON72113.1 | 4.24e-23 | 52.69 | hypothetical protein PanWU01x14_069550, partial [Parasponia andersonii] | [more] |
| KAG6529732.1 | 9.08e-22 | 49.48 | hypothetical protein ZIOFF_011946 [Zingiber officinale] | [more] |
| XP_022152845.1 | 4.33e-21 | 55.91 | uncharacterized protein LOC111020469 [Momordica charantia] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A2P5CH01 | 1.08e-24 | 50.00 | Zinc finger, CCHC-type OS=Parasponia andersonii OX=3476 GN=PanWU01x14_153190 PE=... | [more] |
| A0A2P5CPV0 | 1.98e-24 | 51.04 | Zinc finger, CCHC-type OS=Trema orientale OX=63057 GN=TorRG33x02_277340 PE=4 SV=... | [more] |
| A0A2P5DFR2 | 2.05e-23 | 52.69 | Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... | [more] |
| A0A6J1DF43 | 2.10e-21 | 55.91 | uncharacterized protein LOC111020469 OS=Momordica charantia OX=3673 GN=LOC111020... | [more] |
| A0A438KBI6 | 4.40e-21 | 48.96 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
