MC11g_new0234.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g_new0234.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	MC11: 9732646 .. 9733244 (+)
Sequence length	288
RNA-Seq Expression	MC11g_new0234.1
Synteny	MC11g_new0234.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAGAATGTTGGAATTGTGGTATGACAGGATATTTGAGGAGAAACTGCAAAGCCACAAAGAAAGCTGAGGGGAAAGAAGCTAATGCAAATGTTGTCGCTGAAGAAATACATGATGCTCTAGTTCTTGTTGTTGATGGCACTAATGACACATGGGGGGTGAATTCAGGTGCGCATACTACAGGACAATGTGACATTCTTGAAAATTATGTTGCAGAAAATCATGGAAAGGTGTATTTTGCTGATGTAGAGCCTTTGAACATCATTGAGATTGGTGACGTTAATTTAAAAATGACGAACGATTCAGTTTGAAAGATTTGCAAGGTACATCACGTCCAGAATATGATGAAGAATCTGATTTCTGTGGGGCAATTGGATGATGAAGGATGTCAAATATCATTCGGTCAAAGAAACTGGAAAGTTATAAAGGATTCCATGGTGATCGCTCGAGGAAGAAAGTTAGGAACTTTGTATGTCAACAGCAATGTCAAAGAAATGGTGGCTATATATTGTAGATCATTCGAGTCAGACACAATTATGGCACAGTAAGTTGGGACATATGAGTAAAAAAGATATGAAAATTCTTCAAAGGGAAGTTAGGA

mRNA sequence

ATGACAGGATATTTGAGGAGAAACTGCAAAGCCACAAAGAAAGCTGAGGGGAAAGAAGCTAATGCAAATGTTGTCGCTGAAGAAATACATGATGCTCTAGTTCTTGTTGTTGATGGCACTAATGACACATGGGGGGTGAATTCAGGTGCGCATACTACAGGACAATGTGACATTCTTGAAAATTATGTTGCAGAAAATCATGGAAAGGTGTATTTTGCTGATGTAGAGCCTTTGAACATCATTGAGATTGGTGACGTTAATTTAAAAATGACGAACGATTCAGTTTGA

Coding sequence (CDS)

ATGACAGGATATTTGAGGAGAAACTGCAAAGCCACAAAGAAAGCTGAGGGGAAAGAAGCTAATGCAAATGTTGTCGCTGAAGAAATACATGATGCTCTAGTTCTTGTTGTTGATGGCACTAATGACACATGGGGGGTGAATTCAGGTGCGCATACTACAGGACAATGTGACATTCTTGAAAATTATGTTGCAGAAAATCATGGAAAGGTGTATTTTGCTGATGTAGAGCCTTTGAACATCATTGAGATTGGTGACGTTAATTTAAAAATGACGAACGATTCAGTTTGA

Protein sequence

MTGYLRRNCKATKKAEGKEANANVVAEEIHDALVLVVDGTNDTWGVNSGAHTTGQCDILENYVAENHGKVYFADVEPLNIIEIGDVNLKMTNDSV

Homology

[Close]

BLAST of MC11g_new0234.1 vs. NCBI nr
Match: PON60333.1 (Zinc finger, CCHC-type [Parasponia andersonii])

HSP 1 Score: 105 bits (262), Expect = 2.23e-24
Identity = 48/96 (50.00%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 2   TGYLRRNCKATKKAEGKEANANVVAEEIHDALVLVVDGTNDTWGVNSGA--HTTGQCDIL 61
           TG++++NC+A +K + +  +AN + +E+ DAL+L VD   D+W ++SGA  HTT   D+L
Sbjct: 244 TGHIKKNCRAPRKDDSRN-DANAITDEVQDALLLSVDNPIDSWVLDSGASFHTTAHRDVL 303

Query: 62  ENYVAENHGKVYFADVEPLNIIEIGDVNLKMTNDSV 95
           ENY+A N+GKVY AD EPL+I+ +GD+ LKM+N SV
Sbjct: 304 ENYIAGNYGKVYLADGEPLDIVGMGDIRLKMSNGSV 338

[Close]

BLAST of MC11g_new0234.1 vs. NCBI nr
Match: PON63051.1 (Zinc finger, CCHC-type [Trema orientale])

HSP 1 Score: 104 bits (259), Expect = 4.10e-24
Identity = 49/96 (51.04%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 2   TGYLRRNCKATKKAEGKEANANVVAEEIHDALVLVVDGTNDTWGVNSGA--HTTGQCDIL 61
           TG++++NC+A +K + +  +AN V +E+ DAL+L VD   D+W ++SGA  HTT   ++L
Sbjct: 244 TGHIKKNCRAPRKDDSRN-DANAVTDEVQDALLLSVDNPIDSWVLDSGASFHTTAHRNVL 303

Query: 62  ENYVAENHGKVYFADVEPLNIIEIGDVNLKMTNDSV 95
           ENYVA N+GKVY AD EPL+I+ +GD+ LKM+N SV
Sbjct: 304 ENYVAGNYGKVYLADGEPLDIVGMGDIRLKMSNGSV 338

[Close]

BLAST of MC11g_new0234.1 vs. NCBI nr
Match: PON72113.1 (hypothetical protein PanWU01x14_069550, partial [Parasponia andersonii])

HSP 1 Score: 97.1 bits (240), Expect = 4.24e-23
Identity = 49/93 (52.69%), Postives = 67/93 (72.04%), Query Frame = 0


Query: 5   LRRNCKATKKAEGKEANANVVAEEIHDALVLVVDGTNDTWGVNSGA--HTTGQCDILENY 64
           L+ NC+A +K + +  +ANVV +E+ DAL+L VD   ++W ++SGA  HTT   D+ ENY
Sbjct: 10  LKGNCRAPRKDDNRN-DANVVTDEVQDALLLSVDNQINSWVLDSGASFHTTAHRDVPENY 69

Query: 65  VAENHGKVYFADVEPLNIIEIGDVNLKMTNDSV 95
           V  N+GKVY AD EPLNII +GD+ LKM+N SV
Sbjct: 70  VIGNYGKVYVADGEPLNIIGMGDIRLKMSNGSV 101

[Close]

BLAST of MC11g_new0234.1 vs. NCBI nr
Match: KAG6529732.1 (hypothetical protein ZIOFF_011946 [Zingiber officinale])

HSP 1 Score: 95.9 bits (237), Expect = 9.08e-22
Identity = 48/97 (49.48%), Postives = 66/97 (68.04%), Query Frame = 0


Query: 3   GYLRRNCKATKKAEGKEAN--ANVVAEEIHDALVLVVDGTNDTWGVNSGA--HTTGQCDI 62
           G++++ C   KK + K     AN V EE+ DAL+L +DG  D+W ++SGA  HTT Q +I
Sbjct: 103 GHMKKVCTTPKKNKNKNKGNVANAVTEEVQDALLLSIDGPIDSWVLDSGASFHTTAQREI 162

Query: 63  LENYVAENHGKVYFADVEPLNIIEIGDVNLKMTNDSV 95
           LEN+V  NHGKVY AD EPL+I+ I  ++LKM+N  V
Sbjct: 163 LENFVVGNHGKVYLADGEPLDIVGIESIHLKMSNGVV 199

[Close]

BLAST of MC11g_new0234.1 vs. NCBI nr
Match: XP_022152845.1 (uncharacterized protein LOC111020469 [Momordica charantia])

HSP 1 Score: 97.4 bits (241), Expect = 4.33e-21
Identity = 52/93 (55.91%), Postives = 63/93 (67.74%), Query Frame = 0


Query: 3   GYLRRNCKATKKAEGKEANANVVAEEIHDALVLVVDGTNDTWGVNSGAHTTGQCDILENY 62
           G+L+ NCKA KK EG EA+ANV AE+IHDALV+ V+  +DTW ++SG             
Sbjct: 789 GHLKSNCKAPKKNEGNEADANV-AEQIHDALVIAVESAHDTWVMDSG------------- 848

Query: 63  VAENHGKVYFADVEPLNIIEIGDVNLKMTNDSV 95
              NHGKVY AD EPL+II IG+VNLKM N SV
Sbjct: 849 ---NHGKVYLADGEPLDIIGIGEVNLKMANGSV 864

[Close]

BLAST of MC11g_new0234.1 vs. ExPASy TrEMBL
Match: A0A2P5CH01 (Zinc finger, CCHC-type OS=Parasponia andersonii OX=3476 GN=PanWU01x14_153190 PE=4 SV=1)

HSP 1 Score: 105 bits (262), Expect = 1.08e-24
Identity = 48/96 (50.00%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 2   TGYLRRNCKATKKAEGKEANANVVAEEIHDALVLVVDGTNDTWGVNSGA--HTTGQCDIL 61
           TG++++NC+A +K + +  +AN + +E+ DAL+L VD   D+W ++SGA  HTT   D+L
Sbjct: 244 TGHIKKNCRAPRKDDSRN-DANAITDEVQDALLLSVDNPIDSWVLDSGASFHTTAHRDVL 303

Query: 62  ENYVAENHGKVYFADVEPLNIIEIGDVNLKMTNDSV 95
           ENY+A N+GKVY AD EPL+I+ +GD+ LKM+N SV
Sbjct: 304 ENYIAGNYGKVYLADGEPLDIVGMGDIRLKMSNGSV 338

[Close]

BLAST of MC11g_new0234.1 vs. ExPASy TrEMBL
Match: A0A2P5CPV0 (Zinc finger, CCHC-type OS=Trema orientale OX=63057 GN=TorRG33x02_277340 PE=4 SV=1)

HSP 1 Score: 104 bits (259), Expect = 1.98e-24
Identity = 49/96 (51.04%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 2   TGYLRRNCKATKKAEGKEANANVVAEEIHDALVLVVDGTNDTWGVNSGA--HTTGQCDIL 61
           TG++++NC+A +K + +  +AN V +E+ DAL+L VD   D+W ++SGA  HTT   ++L
Sbjct: 244 TGHIKKNCRAPRKDDSRN-DANAVTDEVQDALLLSVDNPIDSWVLDSGASFHTTAHRNVL 303

Query: 62  ENYVAENHGKVYFADVEPLNIIEIGDVNLKMTNDSV 95
           ENYVA N+GKVY AD EPL+I+ +GD+ LKM+N SV
Sbjct: 304 ENYVAGNYGKVYLADGEPLDIVGMGDIRLKMSNGSV 338

[Close]

BLAST of MC11g_new0234.1 vs. ExPASy TrEMBL
Match: A0A2P5DFR2 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_069550 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.05e-23
Identity = 49/93 (52.69%), Postives = 67/93 (72.04%), Query Frame = 0


Query: 5   LRRNCKATKKAEGKEANANVVAEEIHDALVLVVDGTNDTWGVNSGA--HTTGQCDILENY 64
           L+ NC+A +K + +  +ANVV +E+ DAL+L VD   ++W ++SGA  HTT   D+ ENY
Sbjct: 10  LKGNCRAPRKDDNRN-DANVVTDEVQDALLLSVDNQINSWVLDSGASFHTTAHRDVPENY 69

Query: 65  VAENHGKVYFADVEPLNIIEIGDVNLKMTNDSV 95
           V  N+GKVY AD EPLNII +GD+ LKM+N SV
Sbjct: 70  VIGNYGKVYVADGEPLNIIGMGDIRLKMSNGSV 101

[Close]

BLAST of MC11g_new0234.1 vs. ExPASy TrEMBL
Match: A0A6J1DF43 (uncharacterized protein LOC111020469 OS=Momordica charantia OX=3673 GN=LOC111020469 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.10e-21
Identity = 52/93 (55.91%), Postives = 63/93 (67.74%), Query Frame = 0


Query: 3   GYLRRNCKATKKAEGKEANANVVAEEIHDALVLVVDGTNDTWGVNSGAHTTGQCDILENY 62
           G+L+ NCKA KK EG EA+ANV AE+IHDALV+ V+  +DTW ++SG             
Sbjct: 789 GHLKSNCKAPKKNEGNEADANV-AEQIHDALVIAVESAHDTWVMDSG------------- 848

Query: 63  VAENHGKVYFADVEPLNIIEIGDVNLKMTNDSV 95
              NHGKVY AD EPL+II IG+VNLKM N SV
Sbjct: 849 ---NHGKVYLADGEPLDIIGIGEVNLKMANGSV 864

[Close]

BLAST of MC11g_new0234.1 vs. ExPASy TrEMBL
Match: A0A438KBI6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_8 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.40e-21
Identity = 47/96 (48.96%), Postives = 68/96 (70.83%), Query Frame = 0


Query: 2   TGYLRRNCKATKKAEGKEANANVVAEEIHDALVLVVDGTNDTWGVNSGA--HTTGQCDIL 61
           TG+ +R CK+ KK + ++ +ANVV E++HDAL+LVVD   D W ++SGA  HTT   +I+
Sbjct: 199 TGHFKRQCKSPKK-KNEDDSANVVTEKVHDALLLVVDSPLDDWVLDSGASFHTTPHREII 258

Query: 62  ENYVAENHGKVYFADVEPLNIIEIGDVNLKMTNDSV 95
           +NYVA + GKVY AD   L+++ IGDV + + N SV
Sbjct: 259 QNYVAGDFGKVYLADGSTLDVVGIGDVRISLPNRSV 293

The following BLAST results are available for this feature:

BLAST of MC11g_new0234.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g_new0234.1 vs. NCBI nr


Match Name	E-value	Identity	Description
PON60333.1	2.23e-24	50.00	Zinc finger, CCHC-type [Parasponia andersonii]	[more]
PON63051.1	4.10e-24	51.04	Zinc finger, CCHC-type [Trema orientale]	[more]
PON72113.1	4.24e-23	52.69	hypothetical protein PanWU01x14_069550, partial [Parasponia andersonii]	[more]
KAG6529732.1	9.08e-22	49.48	hypothetical protein ZIOFF_011946 [Zingiber officinale]	[more]
XP_022152845.1	4.33e-21	55.91	uncharacterized protein LOC111020469 [Momordica charantia]	[more]

BLAST of MC11g_new0234.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5CH01	1.08e-24	50.00	Zinc finger, CCHC-type OS=Parasponia andersonii OX=3476 GN=PanWU01x14_153190 PE=...	[more]
A0A2P5CPV0	1.98e-24	51.04	Zinc finger, CCHC-type OS=Trema orientale OX=63057 GN=TorRG33x02_277340 PE=4 SV=...	[more]
A0A2P5DFR2	2.05e-23	52.69	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
A0A6J1DF43	2.10e-21	55.91	uncharacterized protein LOC111020469 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A438KBI6	4.40e-21	48.96	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]

BLAST of MC11g_new0234.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g_new0234	MC11g_new0234	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g_new0234.1-cds	MC11g_new0234.1-cds-MC11:9732667..9732954	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g_new0234.1	MC11g_new0234.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding