Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGCAACCTCCTTACTGGCTCAAATTTCGAAGGATGCCGGTGTGAAATTCACTCCGTTGAAGCTCTACATAATCGTCTCGAACCGTTCCCCTCGCTTCTTCGCAACGCTGCAATTGTCGGATCAATTCTTGCGCAACTTTTCCGTCAATCGTGATCATAGTTCCAAGGTTTCCCTTGAATCCTTCCATGATGCTTTGTTGGATGGCGGAAGCTTTTGTTCAATGACTATCCATTCTTTGGACAAAATAAACCAACTGATCCTTAGATTTGGGACTTCAAGTTAG
mRNA sequence
ATGGACGCAACCTCCTTACTGGCTCAAATTTCGAAGGATGCCGGTGTGAAATTCACTCCGTTGAAGCTCTACATAATCGTCTCGAACCGTTCCCCTCGCTTCTTCGCAACGCTGCAATTGTCGGATCAATTCTTGCGCAACTTTTCCGTCAATCGTGATCATAGTTCCAAGGTTTCCCTTGAATCCTTCCATGATGCTTTGTTGGATGGCGGAAGCTTTTGTTCAATGACTATCCATTCTTTGGACAAAATAAACCAACTGATCCTTAGATTTGGGACTTCAAGTTAG
Coding sequence (CDS)
ATGGACGCAACCTCCTTACTGGCTCAAATTTCGAAGGATGCCGGTGTGAAATTCACTCCGTTGAAGCTCTACATAATCGTCTCGAACCGTTCCCCTCGCTTCTTCGCAACGCTGCAATTGTCGGATCAATTCTTGCGCAACTTTTCCGTCAATCGTGATCATAGTTCCAAGGTTTCCCTTGAATCCTTCCATGATGCTTTGTTGGATGGCGGAAGCTTTTGTTCAATGACTATCCATTCTTTGGACAAAATAAACCAACTGATCCTTAGATTTGGGACTTCAAGTTAG
Protein sequence
MDATSLLAQISKDAGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS
Homology
BLAST of Lsi09G015400 vs. ExPASy TrEMBL
Match:
A0A5D3DZ07 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1810G00070 PE=4 SV=1)
HSP 1 Score: 132.9 bits (333), Expect = 7.1e-28
Identity = 70/96 (72.92%), Postives = 78/96 (81.25%), Query Frame = 0
Query: 1 MDATSLLAQISKD-AGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVS 60
+DATS LAQIS D A +KFTP K +II S+RSPRF ATLQLS Q+ FSV+ DHSSKVS
Sbjct: 13 LDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTTFSVDNDHSSKVS 72
Query: 61 LESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS 96
LESFHDA+LDGGSF SMTIH LDK NQ+ILRF T S
Sbjct: 73 LESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPS 108
BLAST of Lsi09G015400 vs. ExPASy TrEMBL
Match:
A0A0A0K902 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020220 PE=4 SV=1)
HSP 1 Score: 132.9 bits (333), Expect = 7.1e-28
Identity = 70/96 (72.92%), Postives = 78/96 (81.25%), Query Frame = 0
Query: 1 MDATSLLAQIS-KDAGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVS 60
+DATS AQIS DA VKFTP K +II S+RSPRF ATLQLS Q+ +FSV+ DHSSKVS
Sbjct: 13 LDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTSFSVDHDHSSKVS 72
Query: 61 LESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS 96
LESFHDA+LDGGSF SMTIH LDK NQ+ILRF T S
Sbjct: 73 LESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPS 108
BLAST of Lsi09G015400 vs. ExPASy TrEMBL
Match:
A0A1S3CL88 (uncharacterized protein LOC103502250 OS=Cucumis melo OX=3656 GN=LOC103502250 PE=4 SV=1)
HSP 1 Score: 132.9 bits (333), Expect = 7.1e-28
Identity = 70/96 (72.92%), Postives = 78/96 (81.25%), Query Frame = 0
Query: 1 MDATSLLAQISKD-AGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVS 60
+DATS LAQIS D A +KFTP K +II S+RSPRF ATLQLS Q+ FSV+ DHSSKVS
Sbjct: 13 LDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTTFSVDNDHSSKVS 72
Query: 61 LESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS 96
LESFHDA+LDGGSF SMTIH LDK NQ+ILRF T S
Sbjct: 73 LESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPS 108
BLAST of Lsi09G015400 vs. ExPASy TrEMBL
Match:
A0A1S3C8J1 (uncharacterized protein LOC103498010 OS=Cucumis melo OX=3656 GN=LOC103498010 PE=4 SV=1)
HSP 1 Score: 131.0 bits (328), Expect = 2.7e-27
Identity = 67/95 (70.53%), Postives = 78/95 (82.11%), Query Frame = 0
Query: 1 MDATSLLAQISKDAGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSL 60
+DATSLLAQ++KDA VKFTPL L IIVSNRSP+F ATLQLS + NFSV+ + SSKVSL
Sbjct: 13 IDATSLLAQVAKDADVKFTPLMLMIIVSNRSPQFVATLQLSRRLFTNFSVDHNKSSKVSL 72
Query: 61 ESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS 96
+ FHDA+LDGGSF SMTIH LD NQ++LRF T S
Sbjct: 73 QPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPS 107
BLAST of Lsi09G015400 vs. ExPASy TrEMBL
Match:
A0A5D3BV00 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00830 PE=4 SV=1)
HSP 1 Score: 124.4 bits (311), Expect = 2.5e-25
Identity = 64/96 (66.67%), Postives = 76/96 (79.17%), Query Frame = 0
Query: 1 MDATSLLAQISKD-AGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVS 60
+D+TS LAQ S D A +KF P KL++IV NRSPRFFATLQLS ++ N+SV+ HSSKVS
Sbjct: 13 LDSTSYLAQYSNDNADIKFAPGKLFLIVPNRSPRFFATLQLSPRWFSNYSVDHVHSSKVS 72
Query: 61 LESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS 96
LESFHDA+LDGG F SM+IH LDK NQ+ LRF T S
Sbjct: 73 LESFHDAMLDGGDFSSMSIHLLDKTNQMFLRFDTPS 108
BLAST of Lsi09G015400 vs. NCBI nr
Match:
XP_008464344.1 (PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo])
HSP 1 Score: 132.9 bits (333), Expect = 1.5e-27
Identity = 70/96 (72.92%), Postives = 78/96 (81.25%), Query Frame = 0
Query: 1 MDATSLLAQISKD-AGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVS 60
+DATS LAQIS D A +KFTP K +II S+RSPRF ATLQLS Q+ FSV+ DHSSKVS
Sbjct: 13 LDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTTFSVDNDHSSKVS 72
Query: 61 LESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS 96
LESFHDA+LDGGSF SMTIH LDK NQ+ILRF T S
Sbjct: 73 LESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPS 108
BLAST of Lsi09G015400 vs. NCBI nr
Match:
XP_031743987.1 (uncharacterized protein LOC116404759 [Cucumis sativus])
HSP 1 Score: 132.9 bits (333), Expect = 1.5e-27
Identity = 70/96 (72.92%), Postives = 78/96 (81.25%), Query Frame = 0
Query: 1 MDATSLLAQIS-KDAGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVS 60
+DATS AQIS DA VKFTP K +II S+RSPRF ATLQLS Q+ +FSV+ DHSSKVS
Sbjct: 13 LDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTSFSVDHDHSSKVS 72
Query: 61 LESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS 96
LESFHDA+LDGGSF SMTIH LDK NQ+ILRF T S
Sbjct: 73 LESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPS 108
BLAST of Lsi09G015400 vs. NCBI nr
Match:
KAE8646596.1 (hypothetical protein Csa_004903, partial [Cucumis sativus])
HSP 1 Score: 132.9 bits (333), Expect = 1.5e-27
Identity = 70/96 (72.92%), Postives = 78/96 (81.25%), Query Frame = 0
Query: 1 MDATSLLAQIS-KDAGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVS 60
+DATS AQIS DA VKFTP K +II S+RSPRF ATLQLS Q+ +FSV+ DHSSKVS
Sbjct: 13 LDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTSFSVDHDHSSKVS 72
Query: 61 LESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS 96
LESFHDA+LDGGSF SMTIH LDK NQ+ILRF T S
Sbjct: 73 LESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPS 108
BLAST of Lsi09G015400 vs. NCBI nr
Match:
KAA0045262.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK28688.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 132.9 bits (333), Expect = 1.5e-27
Identity = 70/96 (72.92%), Postives = 78/96 (81.25%), Query Frame = 0
Query: 1 MDATSLLAQISKD-AGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVS 60
+DATS LAQIS D A +KFTP K +II S+RSPRF ATLQLS Q+ FSV+ DHSSKVS
Sbjct: 13 LDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTTFSVDNDHSSKVS 72
Query: 61 LESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS 96
LESFHDA+LDGGSF SMTIH LDK NQ+ILRF T S
Sbjct: 73 LESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPS 108
BLAST of Lsi09G015400 vs. NCBI nr
Match:
XP_008458682.1 (PREDICTED: uncharacterized protein LOC103498010 [Cucumis melo])
HSP 1 Score: 131.0 bits (328), Expect = 5.6e-27
Identity = 67/95 (70.53%), Postives = 78/95 (82.11%), Query Frame = 0
Query: 1 MDATSLLAQISKDAGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSL 60
+DATSLLAQ++KDA VKFTPL L IIVSNRSP+F ATLQLS + NFSV+ + SSKVSL
Sbjct: 13 IDATSLLAQVAKDADVKFTPLMLMIIVSNRSPQFVATLQLSRRLFTNFSVDHNKSSKVSL 72
Query: 61 ESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS 96
+ FHDA+LDGGSF SMTIH LD NQ++LRF T S
Sbjct: 73 QPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPS 107
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3DZ07 | 7.1e-28 | 72.92 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A0A0K902 | 7.1e-28 | 72.92 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020220 PE=4 SV=1 | [more] |
| A0A1S3CL88 | 7.1e-28 | 72.92 | uncharacterized protein LOC103502250 OS=Cucumis melo OX=3656 GN=LOC103502250 PE=... | [more] |
| A0A1S3C8J1 | 2.7e-27 | 70.53 | uncharacterized protein LOC103498010 OS=Cucumis melo OX=3656 GN=LOC103498010 PE=... | [more] |
| A0A5D3BV00 | 2.5e-25 | 66.67 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_008464344.1 | 1.5e-27 | 72.92 | PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo] | [more] |
| XP_031743987.1 | 1.5e-27 | 72.92 | uncharacterized protein LOC116404759 [Cucumis sativus] | [more] |
| KAE8646596.1 | 1.5e-27 | 72.92 | hypothetical protein Csa_004903, partial [Cucumis sativus] | [more] |
| KAA0045262.1 | 1.5e-27 | 72.92 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK286... | [more] |
| XP_008458682.1 | 5.6e-27 | 70.53 | PREDICTED: uncharacterized protein LOC103498010 [Cucumis melo] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
