Lsi09G015400.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G015400.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr09: 23523382 .. 23523669 (-)
Sequence length	288
RNA-Seq Expression	Lsi09G015400.1
Synteny	Lsi09G015400.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGCAACCTCCTTACTGGCTCAAATTTCGAAGGATGCCGGTGTGAAATTCACTCCGTTGAAGCTCTACATAATCGTCTCGAACCGTTCCCCTCGCTTCTTCGCAACGCTGCAATTGTCGGATCAATTCTTGCGCAACTTTTCCGTCAATCGTGATCATAGTTCCAAGGTTTCCCTTGAATCCTTCCATGATGCTTTGTTGGATGGCGGAAGCTTTTGTTCAATGACTATCCATTCTTTGGACAAAATAAACCAACTGATCCTTAGATTTGGGACTTCAAGTTAG

mRNA sequence

ATGGACGCAACCTCCTTACTGGCTCAAATTTCGAAGGATGCCGGTGTGAAATTCACTCCGTTGAAGCTCTACATAATCGTCTCGAACCGTTCCCCTCGCTTCTTCGCAACGCTGCAATTGTCGGATCAATTCTTGCGCAACTTTTCCGTCAATCGTGATCATAGTTCCAAGGTTTCCCTTGAATCCTTCCATGATGCTTTGTTGGATGGCGGAAGCTTTTGTTCAATGACTATCCATTCTTTGGACAAAATAAACCAACTGATCCTTAGATTTGGGACTTCAAGTTAG

Coding sequence (CDS)

ATGGACGCAACCTCCTTACTGGCTCAAATTTCGAAGGATGCCGGTGTGAAATTCACTCCGTTGAAGCTCTACATAATCGTCTCGAACCGTTCCCCTCGCTTCTTCGCAACGCTGCAATTGTCGGATCAATTCTTGCGCAACTTTTCCGTCAATCGTGATCATAGTTCCAAGGTTTCCCTTGAATCCTTCCATGATGCTTTGTTGGATGGCGGAAGCTTTTGTTCAATGACTATCCATTCTTTGGACAAAATAAACCAACTGATCCTTAGATTTGGGACTTCAAGTTAG

Protein sequence

MDATSLLAQISKDAGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS

Homology

[Close]

BLAST of Lsi09G015400.1 vs. ExPASy TrEMBL
Match: A0A5D3DZ07 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1810G00070 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 7.1e-28
Identity = 70/96 (72.92%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 1   MDATSLLAQISKD-AGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVS 60
           +DATS LAQIS D A +KFTP K +II S+RSPRF ATLQLS Q+   FSV+ DHSSKVS
Sbjct: 13  LDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTTFSVDNDHSSKVS 72

Query: 61  LESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS 96
           LESFHDA+LDGGSF SMTIH LDK NQ+ILRF T S
Sbjct: 73  LESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPS 108

[Close]

BLAST of Lsi09G015400.1 vs. ExPASy TrEMBL
Match: A0A0A0K902 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020220 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 7.1e-28
Identity = 70/96 (72.92%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 1   MDATSLLAQIS-KDAGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVS 60
           +DATS  AQIS  DA VKFTP K +II S+RSPRF ATLQLS Q+  +FSV+ DHSSKVS
Sbjct: 13  LDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTSFSVDHDHSSKVS 72

Query: 61  LESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS 96
           LESFHDA+LDGGSF SMTIH LDK NQ+ILRF T S
Sbjct: 73  LESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPS 108

[Close]

BLAST of Lsi09G015400.1 vs. ExPASy TrEMBL
Match: A0A1S3CL88 (uncharacterized protein LOC103502250 OS=Cucumis melo OX=3656 GN=LOC103502250 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 7.1e-28
Identity = 70/96 (72.92%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 1   MDATSLLAQISKD-AGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVS 60
           +DATS LAQIS D A +KFTP K +II S+RSPRF ATLQLS Q+   FSV+ DHSSKVS
Sbjct: 13  LDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTTFSVDNDHSSKVS 72

Query: 61  LESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS 96
           LESFHDA+LDGGSF SMTIH LDK NQ+ILRF T S
Sbjct: 73  LESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPS 108

[Close]

BLAST of Lsi09G015400.1 vs. ExPASy TrEMBL
Match: A0A1S3C8J1 (uncharacterized protein LOC103498010 OS=Cucumis melo OX=3656 GN=LOC103498010 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.7e-27
Identity = 67/95 (70.53%), Postives = 78/95 (82.11%), Query Frame = 0


Query: 1   MDATSLLAQISKDAGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSL 60
           +DATSLLAQ++KDA VKFTPL L IIVSNRSP+F ATLQLS +   NFSV+ + SSKVSL
Sbjct: 13  IDATSLLAQVAKDADVKFTPLMLMIIVSNRSPQFVATLQLSRRLFTNFSVDHNKSSKVSL 72

Query: 61  ESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS 96
           + FHDA+LDGGSF SMTIH LD  NQ++LRF T S
Sbjct: 73  QPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPS 107

[Close]

BLAST of Lsi09G015400.1 vs. ExPASy TrEMBL
Match: A0A5D3BV00 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00830 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.5e-25
Identity = 64/96 (66.67%), Postives = 76/96 (79.17%), Query Frame = 0


Query: 1   MDATSLLAQISKD-AGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVS 60
           +D+TS LAQ S D A +KF P KL++IV NRSPRFFATLQLS ++  N+SV+  HSSKVS
Sbjct: 13  LDSTSYLAQYSNDNADIKFAPGKLFLIVPNRSPRFFATLQLSPRWFSNYSVDHVHSSKVS 72

Query: 61  LESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS 96
           LESFHDA+LDGG F SM+IH LDK NQ+ LRF T S
Sbjct: 73  LESFHDAMLDGGDFSSMSIHLLDKTNQMFLRFDTPS 108

[Close]

BLAST of Lsi09G015400.1 vs. NCBI nr
Match: XP_008464344.1 (PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 1.5e-27
Identity = 70/96 (72.92%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 1   MDATSLLAQISKD-AGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVS 60
           +DATS LAQIS D A +KFTP K +II S+RSPRF ATLQLS Q+   FSV+ DHSSKVS
Sbjct: 13  LDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTTFSVDNDHSSKVS 72

Query: 61  LESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS 96
           LESFHDA+LDGGSF SMTIH LDK NQ+ILRF T S
Sbjct: 73  LESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPS 108

[Close]

BLAST of Lsi09G015400.1 vs. NCBI nr
Match: XP_031743987.1 (uncharacterized protein LOC116404759 [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 1.5e-27
Identity = 70/96 (72.92%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 1   MDATSLLAQIS-KDAGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVS 60
           +DATS  AQIS  DA VKFTP K +II S+RSPRF ATLQLS Q+  +FSV+ DHSSKVS
Sbjct: 13  LDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTSFSVDHDHSSKVS 72

Query: 61  LESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS 96
           LESFHDA+LDGGSF SMTIH LDK NQ+ILRF T S
Sbjct: 73  LESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPS 108

[Close]

BLAST of Lsi09G015400.1 vs. NCBI nr
Match: KAE8646596.1 (hypothetical protein Csa_004903, partial [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 1.5e-27
Identity = 70/96 (72.92%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 1   MDATSLLAQIS-KDAGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVS 60
           +DATS  AQIS  DA VKFTP K +II S+RSPRF ATLQLS Q+  +FSV+ DHSSKVS
Sbjct: 13  LDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTSFSVDHDHSSKVS 72

Query: 61  LESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS 96
           LESFHDA+LDGGSF SMTIH LDK NQ+ILRF T S
Sbjct: 73  LESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPS 108

[Close]

BLAST of Lsi09G015400.1 vs. NCBI nr
Match: KAA0045262.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK28688.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 132.9 bits (333), Expect = 1.5e-27
Identity = 70/96 (72.92%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 1   MDATSLLAQISKD-AGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVS 60
           +DATS LAQIS D A +KFTP K +II S+RSPRF ATLQLS Q+   FSV+ DHSSKVS
Sbjct: 13  LDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTTFSVDNDHSSKVS 72

Query: 61  LESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS 96
           LESFHDA+LDGGSF SMTIH LDK NQ+ILRF T S
Sbjct: 73  LESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPS 108

[Close]

BLAST of Lsi09G015400.1 vs. NCBI nr
Match: XP_008458682.1 (PREDICTED: uncharacterized protein LOC103498010 [Cucumis melo])

HSP 1 Score: 131.0 bits (328), Expect = 5.6e-27
Identity = 67/95 (70.53%), Postives = 78/95 (82.11%), Query Frame = 0


Query: 1   MDATSLLAQISKDAGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSL 60
           +DATSLLAQ++KDA VKFTPL L IIVSNRSP+F ATLQLS +   NFSV+ + SSKVSL
Sbjct: 13  IDATSLLAQVAKDADVKFTPLMLMIIVSNRSPQFVATLQLSRRLFTNFSVDHNKSSKVSL 72

Query: 61  ESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS 96
           + FHDA+LDGGSF SMTIH LD  NQ++LRF T S
Sbjct: 73  QPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPS 107

The following BLAST results are available for this feature:

BLAST of Lsi09G015400.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi09G015400.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DZ07	7.1e-28	72.92	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A0A0K902	7.1e-28	72.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020220 PE=4 SV=1	[more]
A0A1S3CL88	7.1e-28	72.92	uncharacterized protein LOC103502250 OS=Cucumis melo OX=3656 GN=LOC103502250 PE=...	[more]
A0A1S3C8J1	2.7e-27	70.53	uncharacterized protein LOC103498010 OS=Cucumis melo OX=3656 GN=LOC103498010 PE=...	[more]
A0A5D3BV00	2.5e-25	66.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Lsi09G015400.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464344.1	1.5e-27	72.92	PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo]	[more]
XP_031743987.1	1.5e-27	72.92	uncharacterized protein LOC116404759 [Cucumis sativus]	[more]
KAE8646596.1	1.5e-27	72.92	hypothetical protein Csa_004903, partial [Cucumis sativus]	[more]
KAA0045262.1	1.5e-27	72.92	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK286...	[more]
XP_008458682.1	5.6e-27	70.53	PREDICTED: uncharacterized protein LOC103498010 [Cucumis melo]	[more]

BLAST of Lsi09G015400.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.70.10.10		coord: 2..95 e-value: 1.9E-6 score: 29.3
None	No IPR available	SUPERFAMILY	55979	DNA clamp	coord: 3..91

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi09G015400	Lsi09G015400	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi09G015400.1.exon.1	Lsi09G015400.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi09G015400.1.CDS.1	Lsi09G015400.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi09G015400.1	Lsi09G015400.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane