Lsi03G011810 (gene) Bottle gourd (USVL1VR-Ls) v1
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Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGGTTGGTCATTGAAAAAGAACTTGGGGTTAGTTGTTGAACTGCTCGATTAATCAGTTGAGGTATTGATTTTCGGTAGAGTTTGTAAGTTAGGGAGTGTTTTGGGATGATATTCACATTGCTGTGGTATTTTAGAAGTTATGTTATGAGAGGATAGTGGAGGTTGAAGGCAGAGAAGTTTCTATAAGTGTGAATATGCTTCTGACTTAAAATCACTAATCAATTCTGAAAAATGAAGTACTGTTCAAGATGTTTCATGGTTCTTATTAAGAGATATGCTTCAATTTTTTTTCCTCCAGATCCTATTCTCTTGTGAATTCCATTGCCAAAGAAATTTGCACTTTGCAACTTCTAGATGTCCTTTTATGTGTAAGAGCTATTCAAATATTTCTTAAAATAAAGTTTTATTCCTGTACAGATTGAAACAACATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCGAGCGGGACGACCCTGGATTTGTGCATGCACAATTCATGGTTTTAAAGACCAAAGTCAAGGTATCCATTTAAAATAGAACTTTTAGAATCATGCTGCAAGTTGGATCCAATTTCAAGGGCATTGCTTGGTTGTTTGTGATTGTAGTCATTCTAGACATTATGTTTCCTTGGGCTTTCGAAAACATGAGACATTTCCTTGTTTCTTTGTTTTGGCATTGATCTTGGTAAGTTAGACGACAATGGTCAGATGTAATTCATATTTTGTGGCATTGTGAGAACTATTTCCTTGAGAAACAATCTTTATTCATTGATCTACCTTGATATTTATTATAAGATGCATCCTTATCACCATGAGTTGGTCTTCTGGTTAACAAGGACCATGTAATAATAAAGGGTTTAGAGGGAATAGGTTCCAGACTGATCACCTACCTACGATTTAATGTCCTACGAGTTACCTTGGCAACCAAATGTAGTAGGGTTAAGTGAGTTTCCCGTGATAATAGTCTAGGTGCATGTAAGATGGCTTGAAAGATTACGAGTATTTAAAAAAAAATGCATCTTTTGATGGGAGCTTAATGTATATGTGAGAGTTGAACTCAAGCATTACTCTATAAAACTTTTACATTTTCTTAAAAGCTTGAAACTACTTTACGTGGAGGAGAGAAACCTGATAGCCTTCATCCTCTTAATTCCATATATTAATTGATGTTTTCCTTTTTGATAAGAATAACGAAATAGTAGAATCAAGGCCAGAGGAGATATCCCTGGTGAGTGGATATGTGAGTACTGCAGAAAACTGTCTTGGAACAGCCACAATTCATGAAGGATATCTGTCGAGCGCAAAATTATTTGGTACTTGCAATTAAAGAAGTGATGGGGCCAGAGGGAGGCAAAAGATAATGTGGTGACTTGGGATTTCATTTCATACTCCAAAAAGGTGAACTTTTTCTTTGTCTGTTTAAGATACAGATATAAGTTCATTCAAGGTTGAAGACACTACTTTGGTGAGTTGACCAGCAAGTGCTGAAGAGTCAAAACCCTGTGCCAGAATATCGTAGGCATAAATTCTGATATCTGAAACTCTCTTATCCATGCAATTGGAAGTACTAATGAGACTGAAAATAGGCAAACACATAATGTAGTATACGATATTTGTGACTGAAAATAGGCAAAAAAACATAATGTAGTATGCAGCATTGGTAATTGGAGTAGGGGTTGAACATTTCTAAACTAAGGGTGCATATCTGGGTGGAAACTAACTTCCTAATCTTGACCCATATAACATGCTATGGCGAAGTAAGAATTAAAGACGTTTAGCGTGTATGGGCCATCGTCATATAACCACATCCATGGAATGATCTCCCATATTGGGTAAAAGTGCAATCGCCAAAAGGAGGGACAATGGTACCAAAAATAATTGTGTGCTAGACCTTCCAAGGGTGTGACCCAAGGAGTTGGGGGGAGTGGAGTTGTGATGTGAATTTCACTCCTTGTTTGGCCCAAGGTGTTTGTGGGCCCCACGACTAAAAAACATCAATTTTATCTTTTATTGACTCCTTACATTGTAGGTCTCAGCAGTTCACAACTCCACTCCTTGCTCCAAACACCCCCTTAGTAAGTGAGTGTGAAGCATAAAAGAGTCGGGCAAAGGGATGGCTTAGCATTAATCGGGAATTATATTGGTTAGGATAGGTGTAACTAGTTAGCTAGACCAACATGAGTGGTGCAACTTGCGAGTTAGGAGTATTTAGGAGTGAGATCAGGACAGAATTAGGAAACTCTTGGATTCTCTCTTAGCTACACATAATTTAATAATTAACCAGTTTCTATCATTTTTTTTTCCACCAAGTAGAGATCTAGAAACAAGCTCATGAATTTCATTAATATCTACCAGAGAAGCACTAATGAAGGCAATAACATATACAAATACTGTGATAAGATTATAATGGTACTCTTTTTCTTGTTTGGGAAAGGAACTGGTACATTTTGCAGGTATTTGGTCAAGGGCAGTTTCAGGACTCCATAATCCATGCCCCAAATTTGTGTAATACAGCAGCCATGATATTTATGATTTCCATTGCTGAGACAGCTACATGCATAAAAAGTACTGCTCTTTGGATTGACTTATTTATGCAAAGAAACAAACTTATTCAATATTTCATACAGCTTGCATAATGCAATTGGCATTTCCTCTTTGCTTATCCATTTGGTAATCATCAGCACTCAAATTATATGAATGTTAGGACTCATAACTACCAAATTGGGCCTTTAGTGTATTTAACTTCTTTTTTTTTCCCCTTTCCTTTAGAAATGAAACAAGTTGCAATTTTTGGATCACCATATATGGTATCCCATTTATCAATCACATGGCATTGGAAGGGATGTAGTTCGGAGTGTAATTATTGCTTACGAGGCAAATGAAGCAACTGGGAAGATTTCTAGTATACTTCCTTTGTTCATACTAGAAATTGGTTATCGTAAATGTCAGTAGACTTTACTTTATTTTTAAAAAGCGTGTTGATGTGACACATAATAAATGGAGGGAGTATGAAAAGTTTTCCACACTCCCGGACCCGTAGTATAGGAAATTTTTCCCAACTTGTTATCATCATTTGGCCGACTTTTGGTAAGAAGTAATTCATAGTAATCACTGCAGAAGAAAACTCATTCAGTTTCACTTGTGTCTGTTGATTGTATGTTATGTATGGGGTGCTGAATTAATTTGATGAAGGTCTTGTTTCTGGTTGCATTTATGATTTATTTGTTGCTATGAACATTCTTCAAGTTCATGTCCCTAAATCATTCCTCAGACATTTCATCAACACAATGACTTCTGAAACCTTACACTTTAAGTTTTATTTGGTCCACCAACCCGATAACCGAATTTCTCTTGAGTTTTTGAACCGAGAAACGTTCTGTAAAATGATTCGCACACCATTTCTGATGCTGTTTTTGTATCCTTTATATGCAGCTTGTGAGCTTGAATCAAAATGGAAAGAAGTTTCAAGGAAAATATCCTATAAGAGGAAGGAGGATGATATAGGAAAGCAAGTAGATGATCAAACAATAAGGTTGCTCAAGCACAGGCAAAAAGCTTTAGGGAAAGTGAAGTGTTTGTTTGATTGCAGTCAATTTGAGTTTGATTGGAAATTGGATCCTTTCTGATTCTTTACATTTTCTTTTACAATATTTTTATATATTTATCTTCAATTCTATGATGAATTGAAATGATTGTTTATAAGATAAATATCTCATGTTTAAAATTGTGTTAAATGTAGTATTTATGATTTTGTTTTAATTCTATGAGATTGAAACAACATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCGAGCGGGACGACCCTGGATTTGTGCATGCACAATTCATGATATAAGTTCATTCAAGGTTGAAGACACTACTTTGCTTGTGAGCTTGAATCAAAATGGAAAGAAGTTTCAAGGAAAATATCCTATAAGAGGAAGGAGGATGATATAGGAAAGCAAGTAGATGATCAAACAATAAGGTTGCTCAAGCACAGGCAAAAAGCTTTAGGGAAAGTGAAGTGTTTGTTTGATTGCAGTCAATTTGAGTTTGATTGGAAATTGGATCCTTTCTGATTCTTTACATTTTCTTTTACAATATTTTTATATATTTATCTTCAATTCTATGATGAATTGAAATGATTGTTTATAAGATAAATATCTCATGTTTAAAATTGTGTTAAATGTAGTATTTATGATTTTGTTTTAATTCT ATGAGATTGAAACAACATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCGAGCGGGACGACCCTGGATTTGTGCATGCACAATTCATGATATAAGTTCATTCAAGGTTGAAGACACTACTTTGCTTGTGAGCTTGAATCAAAATGGAAAGAAGTTTCAAGGAAAATATCCTATAAGAGGAAGGAGGATGATATAG MRLKQHNGEIKGGAKATRAGRPWICACTIHDISSFKVEDTTLLVSLNQNGKKFQGKYPIRGRRMI Homology
BLAST of Lsi03G011810 vs. ExPASy Swiss-Prot
Match: B6JY16 (Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) OX=402676 GN=slx1 PE=3 SV=1) HSP 1 Score: 47.4 bits (111), Expect = 7.3e-05 Identity = 19/29 (65.52%), Postives = 22/29 (75.86%), Query Frame = 0
BLAST of Lsi03G011810 vs. ExPASy Swiss-Prot
Match: Q9P7M3 (Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=slx1 PE=1 SV=1) HSP 1 Score: 45.8 bits (107), Expect = 2.1e-04 Identity = 20/41 (48.78%), Postives = 27/41 (65.85%), Query Frame = 0
BLAST of Lsi03G011810 vs. ExPASy TrEMBL
Match: A0A0A0LCZ9 (GIY-YIG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G683170 PE=4 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 1.5e-08 Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0
BLAST of Lsi03G011810 vs. ExPASy TrEMBL
Match: A0A1S3CFH5 (structure-specific endonuclease subunit slx1 OS=Cucumis melo OX=3656 GN=LOC103500344 PE=4 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 4.3e-08 Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 0
BLAST of Lsi03G011810 vs. ExPASy TrEMBL
Match: A0A6J1J559 (structure-specific endonuclease subunit slx1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481456 PE=4 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 7.3e-08 Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 0
BLAST of Lsi03G011810 vs. ExPASy TrEMBL
Match: A0A6J1J5C9 (structure-specific endonuclease subunit slx1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481456 PE=4 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 7.3e-08 Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 0
BLAST of Lsi03G011810 vs. ExPASy TrEMBL
Match: A0A6J1F1V2 (structure-specific endonuclease subunit slx1 OS=Cucurbita moschata OX=3662 GN=LOC111441428 PE=4 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 7.3e-08 Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 0
BLAST of Lsi03G011810 vs. NCBI nr
Match: XP_021617692.1 (structure-specific endonuclease subunit SLX1 isoform X2 [Manihot esculenta]) HSP 1 Score: 68.9 bits (167), Expect = 1.8e-08 Identity = 39/59 (66.10%), Postives = 41/59 (69.49%), Query Frame = 0
BLAST of Lsi03G011810 vs. NCBI nr
Match: XP_004151512.1 (structure-specific endonuclease subunit SLX1 [Cucumis sativus] >KGN58557.1 hypothetical protein Csa_001754 [Cucumis sativus]) HSP 1 Score: 68.2 bits (165), Expect = 3.1e-08 Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0
BLAST of Lsi03G011810 vs. NCBI nr
Match: XP_004303087.1 (PREDICTED: structure-specific endonuclease subunit slx1 [Fragaria vesca subsp. vesca]) HSP 1 Score: 66.6 bits (161), Expect = 8.9e-08 Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 0
BLAST of Lsi03G011810 vs. NCBI nr
Match: XP_008461838.1 (PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo] >XP_008461839.1 PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo]) HSP 1 Score: 66.6 bits (161), Expect = 8.9e-08 Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 0
BLAST of Lsi03G011810 vs. NCBI nr
Match: KAG7018060.1 (slx1, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 65.9 bits (159), Expect = 1.5e-07 Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 0
BLAST of Lsi03G011810 vs. TAIR 10
Match: AT5G43210.1 (Excinuclease ABC, C subunit, N-terminal ) HSP 1 Score: 57.0 bits (136), Expect = 6.6e-09 Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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