Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTTGGTCATTGAAAAAGAACTTGGGGTTAGTTGTTGAACTGCTCGATTAATCAGTTGAGGTATTGATTTTCGGTAGAGTTTGTAAGTTAGGGAGTGTTTTGGGATGATATTCACATTGCTGTGGTATTTTAGAAGTTATGTTATGAGAGGATAGTGGAGGTTGAAGGCAGAGAAGTTTCTATAAGTGTGAATATGCTTCTGACTTAAAATCACTAATCAATTCTGAAAAATGAAGTACTGTTCAAGATGTTTCATGGTTCTTATTAAGAGATATGCTTCAATTTTTTTTCCTCCAGATCCTATTCTCTTGTGAATTCCATTGCCAAAGAAATTTGCACTTTGCAACTTCTAGATGTCCTTTTATGTGTAAGAGCTATTCAAATATTTCTTAAAATAAAGTTTTATTCCTGTACAGATTGAAACAACATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCGAGCGGGACGACCCTGGATTTGTGCATGCACAATTCATGGTTTTAAAGACCAAAGTCAAGGTATCCATTTAAAATAGAACTTTTAGAATCATGCTGCAAGTTGGATCCAATTTCAAGGGCATTGCTTGGTTGTTTGTGATTGTAGTCATTCTAGACATTATGTTTCCTTGGGCTTTCGAAAACATGAGACATTTCCTTGTTTCTTTGTTTTGGCATTGATCTTGGTAAGTTAGACGACAATGGTCAGATGTAATTCATATTTTGTGGCATTGTGAGAACTATTTCCTTGAGAAACAATCTTTATTCATTGATCTACCTTGATATTTATTATAAGATGCATCCTTATCACCATGAGTTGGTCTTCTGGTTAACAAGGACCATGTAATAATAAAGGGTTTAGAGGGAATAGGTTCCAGACTGATCACCTACCTACGATTTAATGTCCTACGAGTTACCTTGGCAACCAAATGTAGTAGGGTTAAGTGAGTTTCCCGTGATAATAGTCTAGGTGCATGTAAGATGGCTTGAAAGATTACGAGTATTTAAAAAAAAATGCATCTTTTGATGGGAGCTTAATGTATATGTGAGAGTTGAACTCAAGCATTACTCTATAAAACTTTTACATTTTCTTAAAAGCTTGAAACTACTTTACGTGGAGGAGAGAAACCTGATAGCCTTCATCCTCTTAATTCCATATATTAATTGATGTTTTCCTTTTTGATAAGAATAACGAAATAGTAGAATCAAGGCCAGAGGAGATATCCCTGGTGAGTGGATATGTGAGTACTGCAGAAAACTGTCTTGGAACAGCCACAATTCATGAAGGATATCTGTCGAGCGCAAAATTATTTGGTACTTGCAATTAAAGAAGTGATGGGGCCAGAGGGAGGCAAAAGATAATGTGGTGACTTGGGATTTCATTTCATACTCCAAAAAGGTGAACTTTTTCTTTGTCTGTTTAAGATACAGATATAAGTTCATTCAAGGTTGAAGACACTACTTTGGTGAGTTGACCAGCAAGTGCTGAAGAGTCAAAACCCTGTGCCAGAATATCGTAGGCATAAATTCTGATATCTGAAACTCTCTTATCCATGCAATTGGAAGTACTAATGAGACTGAAAATAGGCAAACACATAATGTAGTATACGATATTTGTGACTGAAAATAGGCAAAAAAACATAATGTAGTATGCAGCATTGGTAATTGGAGTAGGGGTTGAACATTTCTAAACTAAGGGTGCATATCTGGGTGGAAACTAACTTCCTAATCTTGACCCATATAACATGCTATGGCGAAGTAAGAATTAAAGACGTTTAGCGTGTATGGGCCATCGTCATATAACCACATCCATGGAATGATCTCCCATATTGGGTAAAAGTGCAATCGCCAAAAGGAGGGACAATGGTACCAAAAATAATTGTGTGCTAGACCTTCCAAGGGTGTGACCCAAGGAGTTGGGGGGAGTGGAGTTGTGATGTGAATTTCACTCCTTGTTTGGCCCAAGGTGTTTGTGGGCCCCACGACTAAAAAACATCAATTTTATCTTTTATTGACTCCTTACATTGTAGGTCTCAGCAGTTCACAACTCCACTCCTTGCTCCAAACACCCCCTTAGTAAGTGAGTGTGAAGCATAAAAGAGTCGGGCAAAGGGATGGCTTAGCATTAATCGGGAATTATATTGGTTAGGATAGGTGTAACTAGTTAGCTAGACCAACATGAGTGGTGCAACTTGCGAGTTAGGAGTATTTAGGAGTGAGATCAGGACAGAATTAGGAAACTCTTGGATTCTCTCTTAGCTACACATAATTTAATAATTAACCAGTTTCTATCATTTTTTTTTCCACCAAGTAGAGATCTAGAAACAAGCTCATGAATTTCATTAATATCTACCAGAGAAGCACTAATGAAGGCAATAACATATACAAATACTGTGATAAGATTATAATGGTACTCTTTTTCTTGTTTGGGAAAGGAACTGGTACATTTTGCAGGTATTTGGTCAAGGGCAGTTTCAGGACTCCATAATCCATGCCCCAAATTTGTGTAATACAGCAGCCATGATATTTATGATTTCCATTGCTGAGACAGCTACATGCATAAAAAGTACTGCTCTTTGGATTGACTTATTTATGCAAAGAAACAAACTTATTCAATATTTCATACAGCTTGCATAATGCAATTGGCATTTCCTCTTTGCTTATCCATTTGGTAATCATCAGCACTCAAATTATATGAATGTTAGGACTCATAACTACCAAATTGGGCCTTTAGTGTATTTAACTTCTTTTTTTTTCCCCTTTCCTTTAGAAATGAAACAAGTTGCAATTTTTGGATCACCATATATGGTATCCCATTTATCAATCACATGGCATTGGAAGGGATGTAGTTCGGAGTGTAATTATTGCTTACGAGGCAAATGAAGCAACTGGGAAGATTTCTAGTATACTTCCTTTGTTCATACTAGAAATTGGTTATCGTAAATGTCAGTAGACTTTACTTTATTTTTAAAAAGCGTGTTGATGTGACACATAATAAATGGAGGGAGTATGAAAAGTTTTCCACACTCCCGGACCCGTAGTATAGGAAATTTTTCCCAACTTGTTATCATCATTTGGCCGACTTTTGGTAAGAAGTAATTCATAGTAATCACTGCAGAAGAAAACTCATTCAGTTTCACTTGTGTCTGTTGATTGTATGTTATGTATGGGGTGCTGAATTAATTTGATGAAGGTCTTGTTTCTGGTTGCATTTATGATTTATTTGTTGCTATGAACATTCTTCAAGTTCATGTCCCTAAATCATTCCTCAGACATTTCATCAACACAATGACTTCTGAAACCTTACACTTTAAGTTTTATTTGGTCCACCAACCCGATAACCGAATTTCTCTTGAGTTTTTGAACCGAGAAACGTTCTGTAAAATGATTCGCACACCATTTCTGATGCTGTTTTTGTATCCTTTATATGCAGCTTGTGAGCTTGAATCAAAATGGAAAGAAGTTTCAAGGAAAATATCCTATAAGAGGAAGGAGGATGATATAGGAAAGCAAGTAGATGATCAAACAATAAGGTTGCTCAAGCACAGGCAAAAAGCTTTAGGGAAAGTGAAGTGTTTGTTTGATTGCAGTCAATTTGAGTTTGATTGGAAATTGGATCCTTTCTGATTCTTTACATTTTCTTTTACAATATTTTTATATATTTATCTTCAATTCTATGATGAATTGAAATGATTGTTTATAAGATAAATATCTCATGTTTAAAATTGTGTTAAATGTAGTATTTATGATTTTGTTTTAATTCT
mRNA sequence
ATGAGATTGAAACAACATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCGAGCGGGACGACCCTGGATTTGTGCATGCACAATTCATGATATAAGTTCATTCAAGGTTGAAGACACTACTTTGCTTGTGAGCTTGAATCAAAATGGAAAGAAGTTTCAAGGAAAATATCCTATAAGAGGAAGGAGGATGATATAGGAAAGCAAGTAGATGATCAAACAATAAGGTTGCTCAAGCACAGGCAAAAAGCTTTAGGGAAAGTGAAGTGTTTGTTTGATTGCAGTCAATTTGAGTTTGATTGGAAATTGGATCCTTTCTGATTCTTTACATTTTCTTTTACAATATTTTTATATATTTATCTTCAATTCTATGATGAATTGAAATGATTGTTTATAAGATAAATATCTCATGTTTAAAATTGTGTTAAATGTAGTATTTATGATTTTGTTTTAATTCT
Coding sequence (CDS)
ATGAGATTGAAACAACATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCGAGCGGGACGACCCTGGATTTGTGCATGCACAATTCATGATATAAGTTCATTCAAGGTTGAAGACACTACTTTGCTTGTGAGCTTGAATCAAAATGGAAAGAAGTTTCAAGGAAAATATCCTATAAGAGGAAGGAGGATGATATAG
Protein sequence
MRLKQHNGEIKGGAKATRAGRPWICACTIHDISSFKVEDTTLLVSLNQNGKKFQGKYPIRGRRMI
Homology
BLAST of Lsi03G011810 vs. ExPASy Swiss-Prot
Match:
B6JY16 (Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) OX=402676 GN=slx1 PE=3 SV=1)
HSP 1 Score: 47.4 bits (111), Expect = 7.3e-05
Identity = 19/29 (65.52%), Postives = 22/29 (75.86%), Query Frame = 0
Query: 2 RLKQHNGEIKGGAKATRAGRPWICACTIH 31
RL+QHNGEIKGGA T+ RPW AC +H
Sbjct: 29 RLRQHNGEIKGGAYKTKRSRPWKVACFVH 57
BLAST of Lsi03G011810 vs. ExPASy Swiss-Prot
Match:
Q9P7M3 (Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=slx1 PE=1 SV=1)
HSP 1 Score: 45.8 bits (107), Expect = 2.1e-04
Identity = 20/41 (48.78%), Postives = 27/41 (65.85%), Query Frame = 0
Query: 2 RLKQHNGEIKGGAKATRAGRPWICACTIH----DISSFKVE 39
RL+QHNGEI GGA T+ GRPW +C ++ +S+ K E
Sbjct: 34 RLRQHNGEIVGGASKTKHGRPWSISCLVYGFPNKVSALKFE 74
BLAST of Lsi03G011810 vs. ExPASy TrEMBL
Match:
A0A0A0LCZ9 (GIY-YIG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G683170 PE=4 SV=1)
HSP 1 Score: 68.2 bits (165), Expect = 1.5e-08
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0
Query: 2 RLKQHNGEIKGGAKATRAGRPWICACTIH 31
RLKQHNGEIKGGAKATRAGRPWICACTIH
Sbjct: 71 RLKQHNGEIKGGAKATRAGRPWICACTIH 99
BLAST of Lsi03G011810 vs. ExPASy TrEMBL
Match:
A0A1S3CFH5 (structure-specific endonuclease subunit slx1 OS=Cucumis melo OX=3656 GN=LOC103500344 PE=4 SV=1)
HSP 1 Score: 66.6 bits (161), Expect = 4.3e-08
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 0
Query: 2 RLKQHNGEIKGGAKATRAGRPWICACTIH 31
RLKQHNGEIKGGAKAT+AGRPWICACTIH
Sbjct: 70 RLKQHNGEIKGGAKATQAGRPWICACTIH 98
BLAST of Lsi03G011810 vs. ExPASy TrEMBL
Match:
A0A6J1J559 (structure-specific endonuclease subunit slx1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481456 PE=4 SV=1)
HSP 1 Score: 65.9 bits (159), Expect = 7.3e-08
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 0
Query: 2 RLKQHNGEIKGGAKATRAGRPWICACTIH 31
RLKQHNGEIKGGAKATRAGRPWICAC IH
Sbjct: 69 RLKQHNGEIKGGAKATRAGRPWICACKIH 97
BLAST of Lsi03G011810 vs. ExPASy TrEMBL
Match:
A0A6J1J5C9 (structure-specific endonuclease subunit slx1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481456 PE=4 SV=1)
HSP 1 Score: 65.9 bits (159), Expect = 7.3e-08
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 0
Query: 2 RLKQHNGEIKGGAKATRAGRPWICACTIH 31
RLKQHNGEIKGGAKATRAGRPWICAC IH
Sbjct: 69 RLKQHNGEIKGGAKATRAGRPWICACKIH 97
BLAST of Lsi03G011810 vs. ExPASy TrEMBL
Match:
A0A6J1F1V2 (structure-specific endonuclease subunit slx1 OS=Cucurbita moschata OX=3662 GN=LOC111441428 PE=4 SV=1)
HSP 1 Score: 65.9 bits (159), Expect = 7.3e-08
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 0
Query: 2 RLKQHNGEIKGGAKATRAGRPWICACTIH 31
RLKQHNGEIKGGAKATRAGRPWICAC IH
Sbjct: 69 RLKQHNGEIKGGAKATRAGRPWICACKIH 97
BLAST of Lsi03G011810 vs. NCBI nr
Match:
XP_021617692.1 (structure-specific endonuclease subunit SLX1 isoform X2 [Manihot esculenta])
HSP 1 Score: 68.9 bits (167), Expect = 1.8e-08
Identity = 39/59 (66.10%), Postives = 41/59 (69.49%), Query Frame = 0
Query: 2 RLKQHNGEIKGGAKATRAGRPWICACTIH---DISSFKVEDT-TLLVSLNQNGKKFQGK 57
RLKQHNGE+KGGAKA+RAGRPWI AC I D S K LLVSLNQNGK Q K
Sbjct: 77 RLKQHNGELKGGAKASRAGRPWIGACIIRGFDDQSEGKPSKVHLLLVSLNQNGKVCQEK 135
BLAST of Lsi03G011810 vs. NCBI nr
Match:
XP_004151512.1 (structure-specific endonuclease subunit SLX1 [Cucumis sativus] >KGN58557.1 hypothetical protein Csa_001754 [Cucumis sativus])
HSP 1 Score: 68.2 bits (165), Expect = 3.1e-08
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0
Query: 2 RLKQHNGEIKGGAKATRAGRPWICACTIH 31
RLKQHNGEIKGGAKATRAGRPWICACTIH
Sbjct: 71 RLKQHNGEIKGGAKATRAGRPWICACTIH 99
BLAST of Lsi03G011810 vs. NCBI nr
Match:
XP_004303087.1 (PREDICTED: structure-specific endonuclease subunit slx1 [Fragaria vesca subsp. vesca])
HSP 1 Score: 66.6 bits (161), Expect = 8.9e-08
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 0
Query: 2 RLKQHNGEIKGGAKATRAGRPWICACTIH------DISSFKVEDTTLLVSLNQNGK 52
RLKQHNGE+KGGAKA+RAGRPWICAC +H ++ SF+ + TL SL + K
Sbjct: 75 RLKQHNGELKGGAKASRAGRPWICACLVHGFKDQNEVCSFESKWKTLSRSLPRKRK 130
BLAST of Lsi03G011810 vs. NCBI nr
Match:
XP_008461838.1 (PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo] >XP_008461839.1 PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo])
HSP 1 Score: 66.6 bits (161), Expect = 8.9e-08
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 0
Query: 2 RLKQHNGEIKGGAKATRAGRPWICACTIH 31
RLKQHNGEIKGGAKAT+AGRPWICACTIH
Sbjct: 70 RLKQHNGEIKGGAKATQAGRPWICACTIH 98
BLAST of Lsi03G011810 vs. NCBI nr
Match:
KAG7018060.1 (slx1, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 65.9 bits (159), Expect = 1.5e-07
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 0
Query: 2 RLKQHNGEIKGGAKATRAGRPWICACTIH 31
RLKQHNGEIKGGAKATRAGRPWICAC IH
Sbjct: 69 RLKQHNGEIKGGAKATRAGRPWICACKIH 97
BLAST of Lsi03G011810 vs. TAIR 10
Match:
AT5G43210.1 (Excinuclease ABC, C subunit, N-terminal )
HSP 1 Score: 57.0 bits (136), Expect = 6.6e-09
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 0
Query: 2 RLKQHNGEIKGGAKATRAGRPWICACTI 30
RLKQHNGEI+GGAKA+ AGRPW+CAC I
Sbjct: 79 RLKQHNGEIRGGAKASSAGRPWLCACII 106
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| B6JY16 | 7.3e-05 | 65.52 | Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces japonicus (s... | [more] |
| Q9P7M3 | 2.1e-04 | 48.78 | Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces pombe (strai... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LCZ9 | 1.5e-08 | 100.00 | GIY-YIG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G683170 PE=... | [more] |
| A0A1S3CFH5 | 4.3e-08 | 96.55 | structure-specific endonuclease subunit slx1 OS=Cucumis melo OX=3656 GN=LOC10350... | [more] |
| A0A6J1J559 | 7.3e-08 | 96.55 | structure-specific endonuclease subunit slx1 isoform X2 OS=Cucurbita maxima OX=3... | [more] |
| A0A6J1J5C9 | 7.3e-08 | 96.55 | structure-specific endonuclease subunit slx1 isoform X1 OS=Cucurbita maxima OX=3... | [more] |
| A0A6J1F1V2 | 7.3e-08 | 96.55 | structure-specific endonuclease subunit slx1 OS=Cucurbita moschata OX=3662 GN=LO... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_021617692.1 | 1.8e-08 | 66.10 | structure-specific endonuclease subunit SLX1 isoform X2 [Manihot esculenta] | [more] |
| XP_004151512.1 | 3.1e-08 | 100.00 | structure-specific endonuclease subunit SLX1 [Cucumis sativus] >KGN58557.1 hypot... | [more] |
| XP_004303087.1 | 8.9e-08 | 57.14 | PREDICTED: structure-specific endonuclease subunit slx1 [Fragaria vesca subsp. v... | [more] |
| XP_008461838.1 | 8.9e-08 | 96.55 | PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo] >XP_00846... | [more] |
| KAG7018060.1 | 1.5e-07 | 96.55 | slx1, partial [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT5G43210.1 | 6.6e-09 | 82.14 | Excinuclease ABC, C subunit, N-terminal | [more] |
