Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTGATTTGACAAAGTAACCAAATTTAAGTCTATCCACAAAAACTTAAAAAAAATTGGGGAAACAAGATAAAGAAATAAATCAATCAATCAAGAGGTGGTATTTGAATGAAACGACGTCGTGGCCTTTTGGGCGCTTCTTTGTTCCCAACGAAGCACGGAAACCAATTTCAATAGGGATCATGAAAGGGGAAGTTCTAAGCGCCTACAGAGCGTTGCTCAGGGCAACCAAGAAATCCTTCGCCGGTGACACCTCGATGCTGACCGGATCAGCCTCCGAGGTCCGCCGTAAGTTCGAGGAGAGCCGCCATGTGACCTCCGAGGCTGAGATTCGCCAACTGCTCGAAGAAGCTCGGGAGGCCTCCCATTTCATCTCCAATATGATCGTTCAGGCCAAACTCACTTCTCGCGGCGGCTATGGTATTGTACCTCGTTCTTTTCCACTTTCGGATTCATTTACGGTGTTCCTCCTCGATTACTTGAACGAATAAACCCAACAACTAATCAAACACTTGGCTAGCCGAATTGTGAATTTGAAATGAATGCACTGCACCCCACATGTTTGATAAAATGTTTCACCCAATTTTTTCCGCTTTTTATTTACTGGAAGCTAGTGGGTTCGTAGAAAAACTCTAGAAACTATTGTGTACTCTTCTGGGGTTATTTGGTTCTTAATTTTTCTAGGTCGGTGGTTTATGAAGCCTTAGATTAGGAATTGAGAATGTGTAAATTGTGTTTGTATCCTATAATAGGTTATAGAAACACAAGTTTGTGTAATCTGAATTTTTGATTACTTAACTTTGTTAGCAGTGTTCTTTTTCCATTTTTGAGCTCAATAAAGAGTGGAAGATTTTAAAGGAGATTATCAATGCCACCTATTGAGACATTCTCAAGTTGGATGGTGTGTCATTACAAACTCACCAATTGGGATAAACAAACCCATATATGAATCAGAAGTTTGAGTTCTTAACTTTGTATTATACAAATATATGCTATAAATCAAATACTTTTTAAGGTTCCTAACATGTCGAACTTCCTAAAGATTCCCTTTTTAATCCTTATAAATAAAGTCTGTGAGAGCCAAACGTAATTTTTGGGTATTGCTGCAGAAATGAAGCCGAGTAAAGATCATGCTGGTGCTACACTAGAAGTTCCTTCTGAAGAGCTTCTGCGCAAATCTACATGAGAAGGTGAGACGATGGATGCTGAGTTTCTCTTCGATAATTGTTTTAACTTTCAGCTATTTGCTTGACTAATTAGCATTTTGCTCTTGCCCTCGGAAGAACTTGGAACATTTTTCTGTTTCCTTTCGTTGGTTCATTTCATATCCATATTTATTTGTGATCGGTTAATGTACTTGGTTGCTATGGTTCTTGCGTTGGGGCTAATGAAAGTCCCAACCTTTTACCTTTTTATCCATTTTGATGGATAGAGAAAGTTGTTAAAAGTTAAATTTTGGCTTAATACTCTTTTATGTGAATGAAATTTTCCAGTATGAATTTTATCAAGAGGACTGGCTTTAGCAGTGTATAAGCAGTAGAGAAAGACTGGCTTTACCTAGTGTTGGTAAGGTGAAATGGGGCCAGCCTGGCCCATAGAGTGCTCTGCCTCGAACTATCGACATCATTCGCTCAACTGAAACAGATTTAATGAAAAATCAGCTATATGTAATCCTCTTCTCCTCACTCTTCTTTCCCTCTCTTTCTCCCTCATCTCATCTTCTCTCTCTGATTCACAACCCAAATATCAAGCAATCCCATCAAAGTTTTGTACAGAATTCCTCTTTCAGCTGGTTTGAAGTTGAAGTGAAGTTTATGAAGATGGGAAGCAGTGGGGATCACAGGGGAGGATGTGGGTTTGGGAGCACAAGTTTGTTTTTGAAGGATCCCGAGTAGCTCAAATAGTTCTTGGATGAAGCCTAAGGCATCGCTGAGTTGTTGGATGAAGTCAATGTCCACATTCACAACATATCACATTATACAGTAAAATACATGGGAGAGATTAAAATCGTCAAGGACGTAAAATGCAGCAAACGACGAGATTGATTTGAGAATTTCAGAGAAACTAGACAGCTCCCGTGTGTACCAATCAGGAAAACTTGGACGAAGTATGCTAACTATAGCAGCCGAGCTATCGTTACCGAAAGCAAAAGGGGAAACTGATTCAGAGAAATGGTATAGAAAGACAAACAGGGACTTCATATTGGGAGAGTTGGATGTAATCACCCGGCTCCCATGGTGAAGATAGAAAGTAAGAGAGGGATTTGATGGGATTGCCTGATATTTTGGTTGTGAATAAGATGAGAGGAGGGAGAAAGAGAAAACAGAAAATATTAAAAATATTTTTTTCTCAATTTAATGATTTTATTAGTAGAGCCTAGAGGGATCTTTTAAACCTATAAATGAAAAGTCATGGACTAAAATGACCAATTTG
mRNA sequence
GGTGATTTGACAAAGTAACCAAATTTAAGTCTATCCACAAAAACTTAAAAAAAATTGGGGAAACAAGATAAAGAAATAAATCAATCAATCAAGAGGTGGTATTTGAATGAAACGACGTCGTGGCCTTTTGGGCGCTTCTTTGTTCCCAACGAAGCACGGAAACCAATTTCAATAGGGATCATGAAAGGGGAAGTTCTAAGCGCCTACAGAGCGTTGCTCAGGGCAACCAAGAAATCCTTCGCCGGTGACACCTCGATGCTGACCGGATCAGCCTCCGAGGTCCGCCGTAAGTTCGAGGAGAGCCGCCATGTGACCTCCGAGGCTGAGATTCGCCAACTGCTCGAAGAAGCTCGGGAGGCCTCCCATTTCATCTCCAATATGATCGTTCAGGCCAAACTCACTTCTCGCGGCGGCTATGAAATGAAGCCGAGTAAAGATCATGCTGGTGCTACACTAGAAGTTCCTTCTGAAGAGCTTCTGCGCAAATCTACATGAGAAGTATGAATTTTATCAAGAGGACTGGCTTTAGCAGTGTATAAGCAGTAGAGAAAGACTGGCTTTACCTAGTGTTGGTAAGGTGAAATGGGGCCAGCCTGGCCCATAGAGTGCTCTGCCTCGAACTATCGACATCATTCGCTCAACTGAAACAGATTTAATGAAAAATCAGCTATATGTAATCCTCTTCTCCTCACTCTTCTTTCCCTCTCTTTCTCCCTCATCTCATCTTCTCTCTCTGATTCACAACCCAAATATCAAGCAATCCCATCAAAGTTTTGTACAGAATTCCTCTTTCAGCTGGTTTGAAGTTGAAGTGAAGTTTATGAAGATGGGAAGCAGTGGGGATCACAGGGGAGGATGTGGGTTTGGGAGCACAAGTTTGTTTTTGAAGGATCCCGAGTAGCTCAAATAGTTCTTGGATGAAGCCTAAGGCATCGCTGAGTTGTTGGATGAAGTCAATGTCCACATTCACAACATATCACATTATACAGTAAAATACATGGGAGAGATTAAAATCGTCAAGGACGTAAAATGCAGCAAACGACGAGATTGATTTGAGAATTTCAGAGAAACTAGACAGCTCCCGTGTGTACCAATCAGGAAAACTTGGACGAAGTATGCTAACTATAGCAGCCGAGCTATCGTTACCGAAAGCAAAAGGGGAAACTGATTCAGAGAAATGGTATAGAAAGACAAACAGGGACTTCATATTGGGAGAGTTGGATGTAATCACCCGGCTCCCATGGTGAAGATAGAAAGTAAGAGAGGGATTTGATGGGATTGCCTGATATTTTGGTTGTGAATAAGATGAGAGGAGGGAGAAAGAGAAAACAGAAAATATTAAAAATATTTTTTTCTCAATTTAATGATTTTATTAGTAGAGCCTAGAGGGATCTTTTAAACCTATAAATGAAAAGTCATGGACTAAAATGACCAATTTG
Coding sequence (CDS)
ATGAAAGGGGAAGTTCTAAGCGCCTACAGAGCGTTGCTCAGGGCAACCAAGAAATCCTTCGCCGGTGACACCTCGATGCTGACCGGATCAGCCTCCGAGGTCCGCCGTAAGTTCGAGGAGAGCCGCCATGTGACCTCCGAGGCTGAGATTCGCCAACTGCTCGAAGAAGCTCGGGAGGCCTCCCATTTCATCTCCAATATGATCGTTCAGGCCAAACTCACTTCTCGCGGCGGCTATGAAATGAAGCCGAGTAAAGATCATGCTGGTGCTACACTAGAAGTTCCTTCTGAAGAGCTTCTGCGCAAATCTACATGA
Protein sequence
MKGEVLSAYRALLRATKKSFAGDTSMLTGSASEVRRKFEESRHVTSEAEIRQLLEEAREASHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKST
Homology
BLAST of Lsi03G010730 vs. ExPASy TrEMBL
Match:
A0A6J1DPV6 (mitochondrial zinc maintenance protein 1, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111022436 PE=4 SV=1)
HSP 1 Score: 181.0 bits (458), Expect = 2.5e-42
Identity = 97/103 (94.17%), Postives = 100/103 (97.09%), Query Frame = 0
Query: 1 MKGEVLSAYRALLRATKKSFAGDTSMLTGSASEVRRKFEESRHVTSEAEIRQLLEEAREA 60
M+GEVLSAYRALLRAT KSFAGDT MLT SA+EVRRKFEESRHVTSEAEIR+LLEEAREA
Sbjct: 1 MRGEVLSAYRALLRATHKSFAGDTLMLTESAAEVRRKFEESRHVTSEAEIRKLLEEAREA 60
Query: 61 SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKS 104
SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKS
Sbjct: 61 SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKS 103
BLAST of Lsi03G010730 vs. ExPASy TrEMBL
Match:
A0A1S3BYH1 (mitochondrial zinc maintenance protein 1, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103494771 PE=4 SV=1)
HSP 1 Score: 180.6 bits (457), Expect = 3.3e-42
Identity = 96/103 (93.20%), Postives = 100/103 (97.09%), Query Frame = 0
Query: 1 MKGEVLSAYRALLRATKKSFAGDTSMLTGSASEVRRKFEESRHVTSEAEIRQLLEEAREA 60
MKGEVLSAYR+LLRATKKSFAGDT MLT SASE+RRKF+ESRHVTSEAEIR+LLEEAREA
Sbjct: 1 MKGEVLSAYRSLLRATKKSFAGDTLMLTESASEIRRKFQESRHVTSEAEIRKLLEEAREA 60
Query: 61 SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKS 104
SHFISNMIVQAK TSRGGYEMKPSKDHAGATLEVPSEELLRKS
Sbjct: 61 SHFISNMIVQAKRTSRGGYEMKPSKDHAGATLEVPSEELLRKS 103
BLAST of Lsi03G010730 vs. ExPASy TrEMBL
Match:
A0A0A0KY80 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G001780 PE=4 SV=1)
HSP 1 Score: 178.7 bits (452), Expect = 1.2e-41
Identity = 94/103 (91.26%), Postives = 100/103 (97.09%), Query Frame = 0
Query: 1 MKGEVLSAYRALLRATKKSFAGDTSMLTGSASEVRRKFEESRHVTSEAEIRQLLEEAREA 60
MKGEVLSAYR+LLRATK+SFAGDT MLT SASE+RRKF+ESRHVTSE EIR+LLEEAREA
Sbjct: 1 MKGEVLSAYRSLLRATKRSFAGDTLMLTESASEIRRKFQESRHVTSEPEIRKLLEEAREA 60
Query: 61 SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKS 104
SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVP+EELLRKS
Sbjct: 61 SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPTEELLRKS 103
BLAST of Lsi03G010730 vs. ExPASy TrEMBL
Match:
A0A6J1GAU2 (mitochondrial zinc maintenance protein 1, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111452487 PE=4 SV=1)
HSP 1 Score: 174.9 bits (442), Expect = 1.8e-40
Identity = 93/103 (90.29%), Postives = 99/103 (96.12%), Query Frame = 0
Query: 1 MKGEVLSAYRALLRATKKSFAGDTSMLTGSASEVRRKFEESRHVTSEAEIRQLLEEAREA 60
+KGEVLSAYRALLRATKKSFAGDT ML SA+EVRRKFEESRHVTS+ EIR+LLEEAREA
Sbjct: 2 VKGEVLSAYRALLRATKKSFAGDTLMLKESAAEVRRKFEESRHVTSDPEIRKLLEEAREA 61
Query: 61 SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKS 104
SHFISNMIVQAKLTSRGGYEMKPSK+HAGATLEVPSEELLR+S
Sbjct: 62 SHFISNMIVQAKLTSRGGYEMKPSKEHAGATLEVPSEELLRRS 104
BLAST of Lsi03G010730 vs. ExPASy TrEMBL
Match:
A0A6J1KH11 (mitochondrial zinc maintenance protein 1, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111493140 PE=4 SV=1)
HSP 1 Score: 171.8 bits (434), Expect = 1.5e-39
Identity = 92/103 (89.32%), Postives = 98/103 (95.15%), Query Frame = 0
Query: 1 MKGEVLSAYRALLRATKKSFAGDTSMLTGSASEVRRKFEESRHVTSEAEIRQLLEEAREA 60
+KGEVLSAYRALLRATKKSFAGDT ML SA+EVRRKFEESRHVTS+ EIR+LLEEAREA
Sbjct: 2 VKGEVLSAYRALLRATKKSFAGDTLMLKESAAEVRRKFEESRHVTSDPEIRKLLEEAREA 61
Query: 61 SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKS 104
SHFISNMIVQAKLTSRGGYEMK SK+HAGATLEVPSEELLR+S
Sbjct: 62 SHFISNMIVQAKLTSRGGYEMKASKEHAGATLEVPSEELLRRS 104
BLAST of Lsi03G010730 vs. NCBI nr
Match:
XP_038905396.1 (mitochondrial zinc maintenance protein 1, mitochondrial [Benincasa hispida])
HSP 1 Score: 187.6 bits (475), Expect = 5.5e-44
Identity = 101/104 (97.12%), Postives = 102/104 (98.08%), Query Frame = 0
Query: 1 MKGEVLSAYRALLRATKKSFAGDTSMLTGSASEVRRKFEESRHVTSEAEIRQLLEEAREA 60
MKGEVLSAYRALLRATKKSFAGDT MLT SASEVRRKFEESRHVTSEAEIR+LLEEAREA
Sbjct: 1 MKGEVLSAYRALLRATKKSFAGDTLMLTESASEVRRKFEESRHVTSEAEIRKLLEEAREA 60
Query: 61 SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKST 105
SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKST
Sbjct: 61 SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKST 104
BLAST of Lsi03G010730 vs. NCBI nr
Match:
XP_022155304.1 (mitochondrial zinc maintenance protein 1, mitochondrial [Momordica charantia])
HSP 1 Score: 181.0 bits (458), Expect = 5.2e-42
Identity = 97/103 (94.17%), Postives = 100/103 (97.09%), Query Frame = 0
Query: 1 MKGEVLSAYRALLRATKKSFAGDTSMLTGSASEVRRKFEESRHVTSEAEIRQLLEEAREA 60
M+GEVLSAYRALLRAT KSFAGDT MLT SA+EVRRKFEESRHVTSEAEIR+LLEEAREA
Sbjct: 1 MRGEVLSAYRALLRATHKSFAGDTLMLTESAAEVRRKFEESRHVTSEAEIRKLLEEAREA 60
Query: 61 SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKS 104
SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKS
Sbjct: 61 SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKS 103
BLAST of Lsi03G010730 vs. NCBI nr
Match:
XP_008454342.1 (PREDICTED: mitochondrial zinc maintenance protein 1, mitochondrial [Cucumis melo])
HSP 1 Score: 180.6 bits (457), Expect = 6.7e-42
Identity = 96/103 (93.20%), Postives = 100/103 (97.09%), Query Frame = 0
Query: 1 MKGEVLSAYRALLRATKKSFAGDTSMLTGSASEVRRKFEESRHVTSEAEIRQLLEEAREA 60
MKGEVLSAYR+LLRATKKSFAGDT MLT SASE+RRKF+ESRHVTSEAEIR+LLEEAREA
Sbjct: 1 MKGEVLSAYRSLLRATKKSFAGDTLMLTESASEIRRKFQESRHVTSEAEIRKLLEEAREA 60
Query: 61 SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKS 104
SHFISNMIVQAK TSRGGYEMKPSKDHAGATLEVPSEELLRKS
Sbjct: 61 SHFISNMIVQAKRTSRGGYEMKPSKDHAGATLEVPSEELLRKS 103
BLAST of Lsi03G010730 vs. NCBI nr
Match:
XP_004152250.1 (mitochondrial zinc maintenance protein 1, mitochondrial [Cucumis sativus] >KGN52811.1 hypothetical protein Csa_014848 [Cucumis sativus])
HSP 1 Score: 178.7 bits (452), Expect = 2.6e-41
Identity = 94/103 (91.26%), Postives = 100/103 (97.09%), Query Frame = 0
Query: 1 MKGEVLSAYRALLRATKKSFAGDTSMLTGSASEVRRKFEESRHVTSEAEIRQLLEEAREA 60
MKGEVLSAYR+LLRATK+SFAGDT MLT SASE+RRKF+ESRHVTSE EIR+LLEEAREA
Sbjct: 1 MKGEVLSAYRSLLRATKRSFAGDTLMLTESASEIRRKFQESRHVTSEPEIRKLLEEAREA 60
Query: 61 SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKS 104
SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVP+EELLRKS
Sbjct: 61 SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPTEELLRKS 103
BLAST of Lsi03G010730 vs. NCBI nr
Match:
XP_022949021.1 (mitochondrial zinc maintenance protein 1, mitochondrial [Cucurbita moschata] >XP_023524456.1 mitochondrial zinc maintenance protein 1, mitochondrial [Cucurbita pepo subsp. pepo])
HSP 1 Score: 174.9 bits (442), Expect = 3.7e-40
Identity = 93/103 (90.29%), Postives = 99/103 (96.12%), Query Frame = 0
Query: 1 MKGEVLSAYRALLRATKKSFAGDTSMLTGSASEVRRKFEESRHVTSEAEIRQLLEEAREA 60
+KGEVLSAYRALLRATKKSFAGDT ML SA+EVRRKFEESRHVTS+ EIR+LLEEAREA
Sbjct: 2 VKGEVLSAYRALLRATKKSFAGDTLMLKESAAEVRRKFEESRHVTSDPEIRKLLEEAREA 61
Query: 61 SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKS 104
SHFISNMIVQAKLTSRGGYEMKPSK+HAGATLEVPSEELLR+S
Sbjct: 62 SHFISNMIVQAKLTSRGGYEMKPSKEHAGATLEVPSEELLRRS 104
BLAST of Lsi03G010730 vs. TAIR 10
Match:
AT3G62810.1 (complex 1 family protein / LVR family protein )
HSP 1 Score: 142.9 bits (359), Expect = 1.5e-34
Identity = 75/102 (73.53%), Postives = 87/102 (85.29%), Query Frame = 0
Query: 3 GEVLSAYRALLRATKKSFAGDTSMLTGSASEVRRKFEESRHVTSEAEIRQLLEEAREASH 62
GE L AYRALLRATKKSFAGDT ML SASE+R+KFEE+R V S ++I +LLEEAREA+
Sbjct: 4 GEALIAYRALLRATKKSFAGDTEMLKASASEIRKKFEENRLVASNSDITRLLEEAREATQ 63
Query: 63 FISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKST 105
FIS MIVQAKL RGGYEMK S++HAGATLE+PSEE+LRK +
Sbjct: 64 FISTMIVQAKLNERGGYEMKASQEHAGATLELPSEEMLRKKS 105
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DPV6 | 2.5e-42 | 94.17 | mitochondrial zinc maintenance protein 1, mitochondrial OS=Momordica charantia O... | [more] |
A0A1S3BYH1 | 3.3e-42 | 93.20 | mitochondrial zinc maintenance protein 1, mitochondrial OS=Cucumis melo OX=3656 ... | [more] |
A0A0A0KY80 | 1.2e-41 | 91.26 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G001780 PE=4 SV=1 | [more] |
A0A6J1GAU2 | 1.8e-40 | 90.29 | mitochondrial zinc maintenance protein 1, mitochondrial OS=Cucurbita moschata OX... | [more] |
A0A6J1KH11 | 1.5e-39 | 89.32 | mitochondrial zinc maintenance protein 1, mitochondrial OS=Cucurbita maxima OX=3... | [more] |
Match Name | E-value | Identity | Description | |
XP_038905396.1 | 5.5e-44 | 97.12 | mitochondrial zinc maintenance protein 1, mitochondrial [Benincasa hispida] | [more] |
XP_022155304.1 | 5.2e-42 | 94.17 | mitochondrial zinc maintenance protein 1, mitochondrial [Momordica charantia] | [more] |
XP_008454342.1 | 6.7e-42 | 93.20 | PREDICTED: mitochondrial zinc maintenance protein 1, mitochondrial [Cucumis melo... | [more] |
XP_004152250.1 | 2.6e-41 | 91.26 | mitochondrial zinc maintenance protein 1, mitochondrial [Cucumis sativus] >KGN52... | [more] |
XP_022949021.1 | 3.7e-40 | 90.29 | mitochondrial zinc maintenance protein 1, mitochondrial [Cucurbita moschata] >XP... | [more] |
Match Name | E-value | Identity | Description | |
AT3G62810.1 | 1.5e-34 | 73.53 | complex 1 family protein / LVR family protein | [more] |