Lsi03G010730.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G010730.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	mitochondrial zinc maintenance protein 1, mitochondrial
Location	chr03: 20552873 .. 20555303 (+)
Sequence length	1439
RNA-Seq Expression	Lsi03G010730.1
Synteny	Lsi03G010730.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTGATTTGACAAAGTAACCAAATTTAAGTCTATCCACAAAAACTTAAAAAAAATTGGGGAAACAAGATAAAGAAATAAATCAATCAATCAAGAGGTGGTATTTGAATGAAACGACGTCGTGGCCTTTTGGGCGCTTCTTTGTTCCCAACGAAGCACGGAAACCAATTTCAATAGGGATCATGAAAGGGGAAGTTCTAAGCGCCTACAGAGCGTTGCTCAGGGCAACCAAGAAATCCTTCGCCGGTGACACCTCGATGCTGACCGGATCAGCCTCCGAGGTCCGCCGTAAGTTCGAGGAGAGCCGCCATGTGACCTCCGAGGCTGAGATTCGCCAACTGCTCGAAGAAGCTCGGGAGGCCTCCCATTTCATCTCCAATATGATCGTTCAGGCCAAACTCACTTCTCGCGGCGGCTATGGTATTGTACCTCGTTCTTTTCCACTTTCGGATTCATTTACGGTGTTCCTCCTCGATTACTTGAACGAATAAACCCAACAACTAATCAAACACTTGGCTAGCCGAATTGTGAATTTGAAATGAATGCACTGCACCCCACATGTTTGATAAAATGTTTCACCCAATTTTTTCCGCTTTTTATTTACTGGAAGCTAGTGGGTTCGTAGAAAAACTCTAGAAACTATTGTGTACTCTTCTGGGGTTATTTGGTTCTTAATTTTTCTAGGTCGGTGGTTTATGAAGCCTTAGATTAGGAATTGAGAATGTGTAAATTGTGTTTGTATCCTATAATAGGTTATAGAAACACAAGTTTGTGTAATCTGAATTTTTGATTACTTAACTTTGTTAGCAGTGTTCTTTTTCCATTTTTGAGCTCAATAAAGAGTGGAAGATTTTAAAGGAGATTATCAATGCCACCTATTGAGACATTCTCAAGTTGGATGGTGTGTCATTACAAACTCACCAATTGGGATAAACAAACCCATATATGAATCAGAAGTTTGAGTTCTTAACTTTGTATTATACAAATATATGCTATAAATCAAATACTTTTTAAGGTTCCTAACATGTCGAACTTCCTAAAGATTCCCTTTTTAATCCTTATAAATAAAGTCTGTGAGAGCCAAACGTAATTTTTGGGTATTGCTGCAGAAATGAAGCCGAGTAAAGATCATGCTGGTGCTACACTAGAAGTTCCTTCTGAAGAGCTTCTGCGCAAATCTACATGAGAAGGTGAGACGATGGATGCTGAGTTTCTCTTCGATAATTGTTTTAACTTTCAGCTATTTGCTTGACTAATTAGCATTTTGCTCTTGCCCTCGGAAGAACTTGGAACATTTTTCTGTTTCCTTTCGTTGGTTCATTTCATATCCATATTTATTTGTGATCGGTTAATGTACTTGGTTGCTATGGTTCTTGCGTTGGGGCTAATGAAAGTCCCAACCTTTTACCTTTTTATCCATTTTGATGGATAGAGAAAGTTGTTAAAAGTTAAATTTTGGCTTAATACTCTTTTATGTGAATGAAATTTTCCAGTATGAATTTTATCAAGAGGACTGGCTTTAGCAGTGTATAAGCAGTAGAGAAAGACTGGCTTTACCTAGTGTTGGTAAGGTGAAATGGGGCCAGCCTGGCCCATAGAGTGCTCTGCCTCGAACTATCGACATCATTCGCTCAACTGAAACAGATTTAATGAAAAATCAGCTATATGTAATCCTCTTCTCCTCACTCTTCTTTCCCTCTCTTTCTCCCTCATCTCATCTTCTCTCTCTGATTCACAACCCAAATATCAAGCAATCCCATCAAAGTTTTGTACAGAATTCCTCTTTCAGCTGGTTTGAAGTTGAAGTGAAGTTTATGAAGATGGGAAGCAGTGGGGATCACAGGGGAGGATGTGGGTTTGGGAGCACAAGTTTGTTTTTGAAGGATCCCGAGTAGCTCAAATAGTTCTTGGATGAAGCCTAAGGCATCGCTGAGTTGTTGGATGAAGTCAATGTCCACATTCACAACATATCACATTATACAGTAAAATACATGGGAGAGATTAAAATCGTCAAGGACGTAAAATGCAGCAAACGACGAGATTGATTTGAGAATTTCAGAGAAACTAGACAGCTCCCGTGTGTACCAATCAGGAAAACTTGGACGAAGTATGCTAACTATAGCAGCCGAGCTATCGTTACCGAAAGCAAAAGGGGAAACTGATTCAGAGAAATGGTATAGAAAGACAAACAGGGACTTCATATTGGGAGAGTTGGATGTAATCACCCGGCTCCCATGGTGAAGATAGAAAGTAAGAGAGGGATTTGATGGGATTGCCTGATATTTTGGTTGTGAATAAGATGAGAGGAGGGAGAAAGAGAAAACAGAAAATATTAAAAATATTTTTTTCTCAATTTAATGATTTTATTAGTAGAGCCTAGAGGGATCTTTTAAACCTATAAATGAAAAGTCATGGACTAAAATGACCAATTTG

mRNA sequence

GGTGATTTGACAAAGTAACCAAATTTAAGTCTATCCACAAAAACTTAAAAAAAATTGGGGAAACAAGATAAAGAAATAAATCAATCAATCAAGAGGTGGTATTTGAATGAAACGACGTCGTGGCCTTTTGGGCGCTTCTTTGTTCCCAACGAAGCACGGAAACCAATTTCAATAGGGATCATGAAAGGGGAAGTTCTAAGCGCCTACAGAGCGTTGCTCAGGGCAACCAAGAAATCCTTCGCCGGTGACACCTCGATGCTGACCGGATCAGCCTCCGAGGTCCGCCGTAAGTTCGAGGAGAGCCGCCATGTGACCTCCGAGGCTGAGATTCGCCAACTGCTCGAAGAAGCTCGGGAGGCCTCCCATTTCATCTCCAATATGATCGTTCAGGCCAAACTCACTTCTCGCGGCGGCTATGAAATGAAGCCGAGTAAAGATCATGCTGGTGCTACACTAGAAGTTCCTTCTGAAGAGCTTCTGCGCAAATCTACATGAGAAGTATGAATTTTATCAAGAGGACTGGCTTTAGCAGTGTATAAGCAGTAGAGAAAGACTGGCTTTACCTAGTGTTGGTAAGGTGAAATGGGGCCAGCCTGGCCCATAGAGTGCTCTGCCTCGAACTATCGACATCATTCGCTCAACTGAAACAGATTTAATGAAAAATCAGCTATATGTAATCCTCTTCTCCTCACTCTTCTTTCCCTCTCTTTCTCCCTCATCTCATCTTCTCTCTCTGATTCACAACCCAAATATCAAGCAATCCCATCAAAGTTTTGTACAGAATTCCTCTTTCAGCTGGTTTGAAGTTGAAGTGAAGTTTATGAAGATGGGAAGCAGTGGGGATCACAGGGGAGGATGTGGGTTTGGGAGCACAAGTTTGTTTTTGAAGGATCCCGAGTAGCTCAAATAGTTCTTGGATGAAGCCTAAGGCATCGCTGAGTTGTTGGATGAAGTCAATGTCCACATTCACAACATATCACATTATACAGTAAAATACATGGGAGAGATTAAAATCGTCAAGGACGTAAAATGCAGCAAACGACGAGATTGATTTGAGAATTTCAGAGAAACTAGACAGCTCCCGTGTGTACCAATCAGGAAAACTTGGACGAAGTATGCTAACTATAGCAGCCGAGCTATCGTTACCGAAAGCAAAAGGGGAAACTGATTCAGAGAAATGGTATAGAAAGACAAACAGGGACTTCATATTGGGAGAGTTGGATGTAATCACCCGGCTCCCATGGTGAAGATAGAAAGTAAGAGAGGGATTTGATGGGATTGCCTGATATTTTGGTTGTGAATAAGATGAGAGGAGGGAGAAAGAGAAAACAGAAAATATTAAAAATATTTTTTTCTCAATTTAATGATTTTATTAGTAGAGCCTAGAGGGATCTTTTAAACCTATAAATGAAAAGTCATGGACTAAAATGACCAATTTG

Coding sequence (CDS)

ATGAAAGGGGAAGTTCTAAGCGCCTACAGAGCGTTGCTCAGGGCAACCAAGAAATCCTTCGCCGGTGACACCTCGATGCTGACCGGATCAGCCTCCGAGGTCCGCCGTAAGTTCGAGGAGAGCCGCCATGTGACCTCCGAGGCTGAGATTCGCCAACTGCTCGAAGAAGCTCGGGAGGCCTCCCATTTCATCTCCAATATGATCGTTCAGGCCAAACTCACTTCTCGCGGCGGCTATGAAATGAAGCCGAGTAAAGATCATGCTGGTGCTACACTAGAAGTTCCTTCTGAAGAGCTTCTGCGCAAATCTACATGA

Protein sequence

MKGEVLSAYRALLRATKKSFAGDTSMLTGSASEVRRKFEESRHVTSEAEIRQLLEEAREASHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKST

Homology

[Close]

BLAST of Lsi03G010730.1 vs. ExPASy TrEMBL
Match: A0A6J1DPV6 (mitochondrial zinc maintenance protein 1, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111022436 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.5e-42
Identity = 97/103 (94.17%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 1   MKGEVLSAYRALLRATKKSFAGDTSMLTGSASEVRRKFEESRHVTSEAEIRQLLEEAREA 60
           M+GEVLSAYRALLRAT KSFAGDT MLT SA+EVRRKFEESRHVTSEAEIR+LLEEAREA
Sbjct: 1   MRGEVLSAYRALLRATHKSFAGDTLMLTESAAEVRRKFEESRHVTSEAEIRKLLEEAREA 60

Query: 61  SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKS 104
           SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKS
Sbjct: 61  SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKS 103

[Close]

BLAST of Lsi03G010730.1 vs. ExPASy TrEMBL
Match: A0A1S3BYH1 (mitochondrial zinc maintenance protein 1, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103494771 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.3e-42
Identity = 96/103 (93.20%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 1   MKGEVLSAYRALLRATKKSFAGDTSMLTGSASEVRRKFEESRHVTSEAEIRQLLEEAREA 60
           MKGEVLSAYR+LLRATKKSFAGDT MLT SASE+RRKF+ESRHVTSEAEIR+LLEEAREA
Sbjct: 1   MKGEVLSAYRSLLRATKKSFAGDTLMLTESASEIRRKFQESRHVTSEAEIRKLLEEAREA 60

Query: 61  SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKS 104
           SHFISNMIVQAK TSRGGYEMKPSKDHAGATLEVPSEELLRKS
Sbjct: 61  SHFISNMIVQAKRTSRGGYEMKPSKDHAGATLEVPSEELLRKS 103

[Close]

BLAST of Lsi03G010730.1 vs. ExPASy TrEMBL
Match: A0A0A0KY80 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G001780 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.2e-41
Identity = 94/103 (91.26%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 1   MKGEVLSAYRALLRATKKSFAGDTSMLTGSASEVRRKFEESRHVTSEAEIRQLLEEAREA 60
           MKGEVLSAYR+LLRATK+SFAGDT MLT SASE+RRKF+ESRHVTSE EIR+LLEEAREA
Sbjct: 1   MKGEVLSAYRSLLRATKRSFAGDTLMLTESASEIRRKFQESRHVTSEPEIRKLLEEAREA 60

Query: 61  SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKS 104
           SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVP+EELLRKS
Sbjct: 61  SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPTEELLRKS 103

[Close]

BLAST of Lsi03G010730.1 vs. ExPASy TrEMBL
Match: A0A6J1GAU2 (mitochondrial zinc maintenance protein 1, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111452487 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.8e-40
Identity = 93/103 (90.29%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 1   MKGEVLSAYRALLRATKKSFAGDTSMLTGSASEVRRKFEESRHVTSEAEIRQLLEEAREA 60
           +KGEVLSAYRALLRATKKSFAGDT ML  SA+EVRRKFEESRHVTS+ EIR+LLEEAREA
Sbjct: 2   VKGEVLSAYRALLRATKKSFAGDTLMLKESAAEVRRKFEESRHVTSDPEIRKLLEEAREA 61

Query: 61  SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKS 104
           SHFISNMIVQAKLTSRGGYEMKPSK+HAGATLEVPSEELLR+S
Sbjct: 62  SHFISNMIVQAKLTSRGGYEMKPSKEHAGATLEVPSEELLRRS 104

[Close]

BLAST of Lsi03G010730.1 vs. ExPASy TrEMBL
Match: A0A6J1KH11 (mitochondrial zinc maintenance protein 1, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111493140 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.5e-39
Identity = 92/103 (89.32%), Postives = 98/103 (95.15%), Query Frame = 0


Query: 1   MKGEVLSAYRALLRATKKSFAGDTSMLTGSASEVRRKFEESRHVTSEAEIRQLLEEAREA 60
           +KGEVLSAYRALLRATKKSFAGDT ML  SA+EVRRKFEESRHVTS+ EIR+LLEEAREA
Sbjct: 2   VKGEVLSAYRALLRATKKSFAGDTLMLKESAAEVRRKFEESRHVTSDPEIRKLLEEAREA 61

Query: 61  SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKS 104
           SHFISNMIVQAKLTSRGGYEMK SK+HAGATLEVPSEELLR+S
Sbjct: 62  SHFISNMIVQAKLTSRGGYEMKASKEHAGATLEVPSEELLRRS 104

[Close]

BLAST of Lsi03G010730.1 vs. NCBI nr
Match: XP_038905396.1 (mitochondrial zinc maintenance protein 1, mitochondrial [Benincasa hispida])

HSP 1 Score: 187.6 bits (475), Expect = 5.5e-44
Identity = 101/104 (97.12%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 1   MKGEVLSAYRALLRATKKSFAGDTSMLTGSASEVRRKFEESRHVTSEAEIRQLLEEAREA 60
           MKGEVLSAYRALLRATKKSFAGDT MLT SASEVRRKFEESRHVTSEAEIR+LLEEAREA
Sbjct: 1   MKGEVLSAYRALLRATKKSFAGDTLMLTESASEVRRKFEESRHVTSEAEIRKLLEEAREA 60

Query: 61  SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKST 105
           SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKST
Sbjct: 61  SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKST 104

[Close]

BLAST of Lsi03G010730.1 vs. NCBI nr
Match: XP_022155304.1 (mitochondrial zinc maintenance protein 1, mitochondrial [Momordica charantia])

HSP 1 Score: 181.0 bits (458), Expect = 5.2e-42
Identity = 97/103 (94.17%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 1   MKGEVLSAYRALLRATKKSFAGDTSMLTGSASEVRRKFEESRHVTSEAEIRQLLEEAREA 60
           M+GEVLSAYRALLRAT KSFAGDT MLT SA+EVRRKFEESRHVTSEAEIR+LLEEAREA
Sbjct: 1   MRGEVLSAYRALLRATHKSFAGDTLMLTESAAEVRRKFEESRHVTSEAEIRKLLEEAREA 60

Query: 61  SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKS 104
           SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKS
Sbjct: 61  SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKS 103

[Close]

BLAST of Lsi03G010730.1 vs. NCBI nr
Match: XP_008454342.1 (PREDICTED: mitochondrial zinc maintenance protein 1, mitochondrial [Cucumis melo])

HSP 1 Score: 180.6 bits (457), Expect = 6.7e-42
Identity = 96/103 (93.20%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 1   MKGEVLSAYRALLRATKKSFAGDTSMLTGSASEVRRKFEESRHVTSEAEIRQLLEEAREA 60
           MKGEVLSAYR+LLRATKKSFAGDT MLT SASE+RRKF+ESRHVTSEAEIR+LLEEAREA
Sbjct: 1   MKGEVLSAYRSLLRATKKSFAGDTLMLTESASEIRRKFQESRHVTSEAEIRKLLEEAREA 60

Query: 61  SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKS 104
           SHFISNMIVQAK TSRGGYEMKPSKDHAGATLEVPSEELLRKS
Sbjct: 61  SHFISNMIVQAKRTSRGGYEMKPSKDHAGATLEVPSEELLRKS 103

[Close]

BLAST of Lsi03G010730.1 vs. NCBI nr
Match: XP_004152250.1 (mitochondrial zinc maintenance protein 1, mitochondrial [Cucumis sativus] >KGN52811.1 hypothetical protein Csa_014848 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 2.6e-41
Identity = 94/103 (91.26%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 1   MKGEVLSAYRALLRATKKSFAGDTSMLTGSASEVRRKFEESRHVTSEAEIRQLLEEAREA 60
           MKGEVLSAYR+LLRATK+SFAGDT MLT SASE+RRKF+ESRHVTSE EIR+LLEEAREA
Sbjct: 1   MKGEVLSAYRSLLRATKRSFAGDTLMLTESASEIRRKFQESRHVTSEPEIRKLLEEAREA 60

Query: 61  SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKS 104
           SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVP+EELLRKS
Sbjct: 61  SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPTEELLRKS 103

[Close]

BLAST of Lsi03G010730.1 vs. NCBI nr
Match: XP_022949021.1 (mitochondrial zinc maintenance protein 1, mitochondrial [Cucurbita moschata] >XP_023524456.1 mitochondrial zinc maintenance protein 1, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174.9 bits (442), Expect = 3.7e-40
Identity = 93/103 (90.29%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 1   MKGEVLSAYRALLRATKKSFAGDTSMLTGSASEVRRKFEESRHVTSEAEIRQLLEEAREA 60
           +KGEVLSAYRALLRATKKSFAGDT ML  SA+EVRRKFEESRHVTS+ EIR+LLEEAREA
Sbjct: 2   VKGEVLSAYRALLRATKKSFAGDTLMLKESAAEVRRKFEESRHVTSDPEIRKLLEEAREA 61

Query: 61  SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKS 104
           SHFISNMIVQAKLTSRGGYEMKPSK+HAGATLEVPSEELLR+S
Sbjct: 62  SHFISNMIVQAKLTSRGGYEMKPSKEHAGATLEVPSEELLRRS 104

[Close]

BLAST of Lsi03G010730.1 vs. TAIR 10
Match: AT3G62810.1 (complex 1 family protein / LVR family protein )

HSP 1 Score: 142.9 bits (359), Expect = 1.5e-34
Identity = 75/102 (73.53%), Postives = 87/102 (85.29%), Query Frame = 0


Query: 3   GEVLSAYRALLRATKKSFAGDTSMLTGSASEVRRKFEESRHVTSEAEIRQLLEEAREASH 62
           GE L AYRALLRATKKSFAGDT ML  SASE+R+KFEE+R V S ++I +LLEEAREA+ 
Sbjct: 4   GEALIAYRALLRATKKSFAGDTEMLKASASEIRKKFEENRLVASNSDITRLLEEAREATQ 63

Query: 63  FISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKST 105
           FIS MIVQAKL  RGGYEMK S++HAGATLE+PSEE+LRK +
Sbjct: 64  FISTMIVQAKLNERGGYEMKASQEHAGATLELPSEEMLRKKS 105

The following BLAST results are available for this feature:

BLAST of Lsi03G010730.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G010730.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DPV6	2.5e-42	94.17	mitochondrial zinc maintenance protein 1, mitochondrial OS=Momordica charantia O...	[more]
A0A1S3BYH1	3.3e-42	93.20	mitochondrial zinc maintenance protein 1, mitochondrial OS=Cucumis melo OX=3656 ...	[more]
A0A0A0KY80	1.2e-41	91.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G001780 PE=4 SV=1	[more]
A0A6J1GAU2	1.8e-40	90.29	mitochondrial zinc maintenance protein 1, mitochondrial OS=Cucurbita moschata OX...	[more]
A0A6J1KH11	1.5e-39	89.32	mitochondrial zinc maintenance protein 1, mitochondrial OS=Cucurbita maxima OX=3...	[more]

BLAST of Lsi03G010730.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905396.1	5.5e-44	97.12	mitochondrial zinc maintenance protein 1, mitochondrial [Benincasa hispida]	[more]
XP_022155304.1	5.2e-42	94.17	mitochondrial zinc maintenance protein 1, mitochondrial [Momordica charantia]	[more]
XP_008454342.1	6.7e-42	93.20	PREDICTED: mitochondrial zinc maintenance protein 1, mitochondrial [Cucumis melo...	[more]
XP_004152250.1	2.6e-41	91.26	mitochondrial zinc maintenance protein 1, mitochondrial [Cucumis sativus] >KGN52...	[more]
XP_022949021.1	3.7e-40	90.29	mitochondrial zinc maintenance protein 1, mitochondrial [Cucurbita moschata] >XP...	[more]

BLAST of Lsi03G010730.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G62810.1	1.5e-34	73.53	complex 1 family protein / LVR family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 4..60 e-value: 2.0E-12 score: 47.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..104
None	No IPR available	PANTHER	PTHR46749:SF2	BNAA09G40160D PROTEIN	coord: 2..102
None	No IPR available	PANTHER	PTHR46749	COMPLEX III ASSEMBLY FACTOR LYRM7	coord: 2..102
None	No IPR available	CDD	cd20267	Complex1_LYR_LYRM7	coord: 5..76 e-value: 5.71283E-25 score: 87.2339

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi03G010730	Lsi03G010730	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi03G010730.1.exon.3	Lsi03G010730.1.exon.3	exon
Lsi03G010730.1.exon.2	Lsi03G010730.1.exon.2	exon
Lsi03G010730.1.exon.1	Lsi03G010730.1.exon.1	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi03G010730.1.five_prime_UTR.1	Lsi03G010730.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi03G010730.1.CDS.1	Lsi03G010730.1.CDS.1	CDS
Lsi03G010730.1.CDS.2	Lsi03G010730.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi03G010730.1.three_prime_UTR.1	Lsi03G010730.1.three_prime_UTR.1	three_prime_UTR
Lsi03G010730.1.three_prime_UTR.2	Lsi03G010730.1.three_prime_UTR.2	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi03G010730.1	Lsi03G010730.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0004386	helicase activity