Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGGGTCAAGACCAATTGCTCGACGCTGCCGAAGAATATGATGATGAGGATTTGGGCCAGTTAGGCCAGACATCGTCCGCAAGAGAGACTTCAGGTTAATTTACATTATTTCTCTTTTTATGTTCATTGGCATATGACATGTTATTGTAATTTTTTGTTCTTTGTTTTTTCTTGGATTCAGATGGTAATAATACGGCTAATAGGACGACACATTCCTATTCGCGTAATATTGAGTTGGATAGATATGTCGTACTTCATGGGCGAATTCCCATTGAAATTGACCCTAATTTGAAGAAGCCAGTTTGCAACTGGGCTGTGAAGTTTAGAAACGCAATTAGTATAGCTGTGAGAGAATCATTTCTGGTTCGTTGCGCATCAATCAGAGATGTACCGGCAGATTGTAAGGAACTTGTCAAAAGTCGATTGATGGTAAGTTAAACACGTCATTAATTCTGAAAACTTTTTATAACCTATGTATTATAATAAATGTACCTCTATGTAGGAGCATTTCGATTTGGACCTATCCAAACCAGCAATGATCAGGTTCCTTGCACGACAAATGCAAAACATATTCAAAGAGTATCGGACAGATTTACACAGACACTACAAAAAATATGACACTCCTGAAGAGGCACTTGCAAACCCACCAGATCGGCTTAAAGATGCCATTGAAGTTGGCATTTTCTATGTACTAAGTTCGAGACCCCTGAGTGGAAGGCATGTTCTCATTTCTCCTGATATATAG
mRNA sequence
ATGACGGGTCAAGACCAATTGCTCGACGCTGCCGAAGAATATGATGATGAGGATTTGGGCCAGTTAGGCCAGACATCGTCCGCAAGAGAGACTTCAGATGGTAATAATACGGCTAATAGGACGACACATTCCTATTCGCGTAATATTGAGTTGGATAGATATGTCGTACTTCATGGGCGAATTCCCATTGAAATTGACCCTAATTTGAAGAAGCCAGTTTGCAACTGGGCTGTGAAGTTTAGAAACGCAATTAGTATAGCTGTGAGAGAATCATTTCTGGTTCGTTGCGCATCAATCAGAGATGTACCGGCAGATTGTAAGGAACTTGTCAAAAGTCGATTGATGGAGCATTTCGATTTGGACCTATCCAAACCAGCAATGATCAGGTTCCTTGCACGACAAATGCAAAACATATTCAAAGAGTATCGGACAGATTTACACAGACACTACAAAAAATATGACACTCCTGAAGAGGCACTTGCAAACCCACCAGATCGGCTTAAAGATGCCATTGAAGTTGGCATTTTCTATGTACTAAGTTCGAGACCCCTGAGTGGAAGGCATGTTCTCATTTCTCCTGATATATAG
Coding sequence (CDS)
ATGACGGGTCAAGACCAATTGCTCGACGCTGCCGAAGAATATGATGATGAGGATTTGGGCCAGTTAGGCCAGACATCGTCCGCAAGAGAGACTTCAGATGGTAATAATACGGCTAATAGGACGACACATTCCTATTCGCGTAATATTGAGTTGGATAGATATGTCGTACTTCATGGGCGAATTCCCATTGAAATTGACCCTAATTTGAAGAAGCCAGTTTGCAACTGGGCTGTGAAGTTTAGAAACGCAATTAGTATAGCTGTGAGAGAATCATTTCTGGTTCGTTGCGCATCAATCAGAGATGTACCGGCAGATTGTAAGGAACTTGTCAAAAGTCGATTGATGGAGCATTTCGATTTGGACCTATCCAAACCAGCAATGATCAGGTTCCTTGCACGACAAATGCAAAACATATTCAAAGAGTATCGGACAGATTTACACAGACACTACAAAAAATATGACACTCCTGAAGAGGCACTTGCAAACCCACCAGATCGGCTTAAAGATGCCATTGAAGTTGGCATTTTCTATGTACTAAGTTCGAGACCCCTGAGTGGAAGGCATGTTCTCATTTCTCCTGATATATAG
Protein sequence
MTGQDQLLDAAEEYDDEDLGQLGQTSSARETSDGNNTANRTTHSYSRNIELDRYVVLHGRIPIEIDPNLKKPVCNWAVKFRNAISIAVRESFLVRCASIRDVPADCKELVKSRLMEHFDLDLSKPAMIRFLARQMQNIFKEYRTDLHRHYKKYDTPEEALANPPDRLKDAIEVGIFYVLSSRPLSGRHVLISPDI
Homology
BLAST of Lcy10g005560 vs. ExPASy TrEMBL
Match:
A0A5A7UVG1 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G004200 PE=4 SV=1)
HSP 1 Score: 121.7 bits (304), Expect = 3.4e-24
Identity = 67/157 (42.68%), Postives = 96/157 (61.15%), Query Frame = 0
Query: 16 DEDLGQLGQTSSARETSDGNNTANRTT-----HSYSRNIELDRYVVLHGRIPIEIDPNLK 75
+EDL + + SS+ + +++ +TT + SR +EL+R+V ++GRIP+ I P +
Sbjct: 11 EEDLDNIAEGSSSVSDNTVGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPEAE 70
Query: 76 KPVCNWAVKFRNAISIAVRESFLVRCASIRDVPADCKELVKSRLMEHFDLDLSKPAMIRF 135
KP+ AV+F AI + VR++F VRC DV + E+VK L F LD + AM RF
Sbjct: 71 KPISPHAVRFSQAIGVCVRKTFPVRCLKWADVGREYIEVVKGDLQRLFVLDFNDQAMNRF 130
Query: 136 LARQMQNIFKEYRTDLHRHYKKYDTPEEALANPPDRL 168
+ QM FKE+R D HRH+KKY PEEA ANPP+ L
Sbjct: 131 VEHQMLTTFKEFRVDCHRHFKKYSDPEEARANPPNAL 167
BLAST of Lcy10g005560 vs. ExPASy TrEMBL
Match:
A0A5D3C6Z8 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00370 PE=4 SV=1)
HSP 1 Score: 121.3 bits (303), Expect = 4.4e-24
Identity = 67/167 (40.12%), Postives = 92/167 (55.09%), Query Frame = 0
Query: 1 MTGQDQLLDAAEEYDDEDLGQLGQTSSARETSDGNNTANRTTHSYSRNIELDRYVVLHGR 60
M D L ++ D+ G E+S T + SR +EL+R+V ++GR
Sbjct: 1 METDDMFLQFEDDLDNNIAGGSSSVGDNTESSSQQTTPTPRRRAQSRLLELERHVAINGR 60
Query: 61 IPIEIDPNLKKPVCNWAVKFRNAISIAVRESFLVRCASIRDVPADCKELVKSRLMEHFDL 120
IP+ I P +KP+ AV+F AI + VR++F VRC DV + E+VK L F L
Sbjct: 61 IPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWTDVGREYIEVVKGDLQRFFVL 120
Query: 121 DLSKPAMIRFLARQMQNIFKEYRTDLHRHYKKYDTPEEALANPPDRL 168
D + AM RF+ QM FKE+R D H+H+KKY PEEA ANPP+ L
Sbjct: 121 DFNDQAMNRFVEHQMLTTFKEFRADCHKHFKKYSDPEEARANPPNAL 167
BLAST of Lcy10g005560 vs. ExPASy TrEMBL
Match:
A0A5D3CG61 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold107G00520 PE=4 SV=1)
HSP 1 Score: 121.3 bits (303), Expect = 4.4e-24
Identity = 67/167 (40.12%), Postives = 92/167 (55.09%), Query Frame = 0
Query: 1 MTGQDQLLDAAEEYDDEDLGQLGQTSSARETSDGNNTANRTTHSYSRNIELDRYVVLHGR 60
M D L ++ D+ G E+S T + SR +EL+R+V ++GR
Sbjct: 1 METDDMFLQFEDDLDNNIAGGSSSVGDNTESSSQQTTPTPRRRAQSRLLELERHVAINGR 60
Query: 61 IPIEIDPNLKKPVCNWAVKFRNAISIAVRESFLVRCASIRDVPADCKELVKSRLMEHFDL 120
IP+ I P +KP+ AV+F AI + VR++F VRC DV + E+VK L F L
Sbjct: 61 IPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWTDVGREYIEVVKGDLQRFFVL 120
Query: 121 DLSKPAMIRFLARQMQNIFKEYRTDLHRHYKKYDTPEEALANPPDRL 168
D + AM RF+ QM FKE+R D H+H+KKY PEEA ANPP+ L
Sbjct: 121 DFNDQAMNRFVEHQMLTTFKEFRADCHKHFKKYSDPEEARANPPNAL 167
BLAST of Lcy10g005560 vs. ExPASy TrEMBL
Match:
A0A5D3DFY2 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00030 PE=4 SV=1)
HSP 1 Score: 121.3 bits (303), Expect = 4.4e-24
Identity = 67/167 (40.12%), Postives = 92/167 (55.09%), Query Frame = 0
Query: 1 MTGQDQLLDAAEEYDDEDLGQLGQTSSARETSDGNNTANRTTHSYSRNIELDRYVVLHGR 60
M D L ++ D+ G E+S T + SR +EL+R+V ++GR
Sbjct: 154 METDDMFLQFEDDLDNNIAGGSSSVGDNTESSSQQTTPTPRRRAQSRLLELERHVAINGR 213
Query: 61 IPIEIDPNLKKPVCNWAVKFRNAISIAVRESFLVRCASIRDVPADCKELVKSRLMEHFDL 120
IP+ I P +KP+ AV+F AI + VR++F VRC DV + E+VK L F L
Sbjct: 214 IPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWTDVGREYIEVVKGDLQRFFVL 273
Query: 121 DLSKPAMIRFLARQMQNIFKEYRTDLHRHYKKYDTPEEALANPPDRL 168
D + AM RF+ QM FKE+R D H+H+KKY PEEA ANPP+ L
Sbjct: 274 DFNDQAMNRFVEHQMLTTFKEFRADCHKHFKKYSDPEEARANPPNAL 320
BLAST of Lcy10g005560 vs. ExPASy TrEMBL
Match:
A0A5D3CI90 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002690 PE=4 SV=1)
HSP 1 Score: 121.3 bits (303), Expect = 4.4e-24
Identity = 67/167 (40.12%), Postives = 92/167 (55.09%), Query Frame = 0
Query: 1 MTGQDQLLDAAEEYDDEDLGQLGQTSSARETSDGNNTANRTTHSYSRNIELDRYVVLHGR 60
M D L ++ D+ G E+S T + SR +EL+R+V ++GR
Sbjct: 154 METDDMFLQFEDDLDNNIAGGSSSVGDNTESSSQQTTPTPRRRAQSRLLELERHVAINGR 213
Query: 61 IPIEIDPNLKKPVCNWAVKFRNAISIAVRESFLVRCASIRDVPADCKELVKSRLMEHFDL 120
IP+ I P +KP+ AV+F AI + VR++F VRC DV + E+VK L F L
Sbjct: 214 IPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWTDVGREYIEVVKGDLQRFFVL 273
Query: 121 DLSKPAMIRFLARQMQNIFKEYRTDLHRHYKKYDTPEEALANPPDRL 168
D + AM RF+ QM FKE+R D H+H+KKY PEEA ANPP+ L
Sbjct: 274 DFNDQAMNRFVEHQMLTTFKEFRADCHKHFKKYSDPEEARANPPNAL 320
BLAST of Lcy10g005560 vs. NCBI nr
Match:
XP_038887409.1 (poly [ADP-ribose] polymerase 1-like isoform X2 [Benincasa hispida])
HSP 1 Score: 129.8 bits (325), Expect = 2.6e-26
Identity = 65/150 (43.33%), Postives = 97/150 (64.67%), Query Frame = 0
Query: 23 GQTSSARETSDGNNTANRTTHSYSRNIELDRYVVLHGRIPIEIDPNLKKPVCNWAVKFRN 82
G S +R+ S G R T +SRN+ELDR+V +HGRI IEID + KPVC A KF N
Sbjct: 554 GSRSCSRQVSRGE---KRRTRGHSRNLELDRHVNIHGRIRIEIDEEVGKPVCANATKFSN 613
Query: 83 AISIAVRESFLVRCASIRDVPADCKELVKSRLMEHFDLDLSKPAMIRFLARQMQNIFKEY 142
AI R + +RC DV + ++LV +L+ +FD D+ K + +++ +++QN FKEY
Sbjct: 614 AIGTIARNTIPLRCKDWSDVSKEVRDLVVDQLLSYFDFDVGKKHVKKYVLQRVQNTFKEY 673
Query: 143 RTDLHRHYKKYDTPEEALANPPDRLKDAIE 173
R+DL++HY+++ P+EA A PP R+ DA +
Sbjct: 674 RSDLYKHYRRFKDPKEARACPPKRITDATD 700
BLAST of Lcy10g005560 vs. NCBI nr
Match:
XP_038902987.1 (uncharacterized protein LOC120089695 [Benincasa hispida])
HSP 1 Score: 129.0 bits (323), Expect = 4.4e-26
Identity = 72/172 (41.86%), Postives = 108/172 (62.79%), Query Frame = 0
Query: 1 MTGQDQLLDAAEEYDDEDLGQLGQTSSARETSDGNNTANRTTHSYSRNIELDRYVVLHGR 60
M+ ++ +A EE+ ++L + SS +TSD ++T+NR +SRNI+L++YV HG
Sbjct: 1 MSTPNRQREADEEF--QELYLNNKVSSVGDTSDSSSTSNRKKREHSRNIKLEKYVQKHGI 60
Query: 61 IPIEIDPNLKKPVCNWAVKFRNAISIAVRESFLVRCASIRDVPADCKELVKSRLMEHFDL 120
I I I+ KP+ +V+F NAI +AVR +F V C + +VP + EL K +L+ HF L
Sbjct: 61 IIIVINEGETKPISKHSVRFSNAIGVAVRFAFPVHCRTFTEVPNEFIELAKIQLLAHFKL 120
Query: 121 DLSKPAMIRFLARQMQNIFKEYRTDLHRHYKKYDTPEEALANPPDRLKDAIE 173
DLS + RF+ QMQN FKE+R DL+RHY+K P++ A+ P LK+ E
Sbjct: 121 DLSSQRLNRFIEHQMQNSFKEFRADLNRHYRKCGNPQQVCASLPSWLKNRPE 170
BLAST of Lcy10g005560 vs. NCBI nr
Match:
KAA0057529.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 121.7 bits (304), Expect = 7.0e-24
Identity = 67/157 (42.68%), Postives = 96/157 (61.15%), Query Frame = 0
Query: 16 DEDLGQLGQTSSARETSDGNNTANRTT-----HSYSRNIELDRYVVLHGRIPIEIDPNLK 75
+EDL + + SS+ + +++ +TT + SR +EL+R+V ++GRIP+ I P +
Sbjct: 11 EEDLDNIAEGSSSVSDNTVGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPEAE 70
Query: 76 KPVCNWAVKFRNAISIAVRESFLVRCASIRDVPADCKELVKSRLMEHFDLDLSKPAMIRF 135
KP+ AV+F AI + VR++F VRC DV + E+VK L F LD + AM RF
Sbjct: 71 KPISPHAVRFSQAIGVCVRKTFPVRCLKWADVGREYIEVVKGDLQRLFVLDFNDQAMNRF 130
Query: 136 LARQMQNIFKEYRTDLHRHYKKYDTPEEALANPPDRL 168
+ QM FKE+R D HRH+KKY PEEA ANPP+ L
Sbjct: 131 VEHQMLTTFKEFRVDCHRHFKKYSDPEEARANPPNAL 167
BLAST of Lcy10g005560 vs. NCBI nr
Match:
TYK22506.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 121.3 bits (303), Expect = 9.1e-24
Identity = 67/167 (40.12%), Postives = 92/167 (55.09%), Query Frame = 0
Query: 1 MTGQDQLLDAAEEYDDEDLGQLGQTSSARETSDGNNTANRTTHSYSRNIELDRYVVLHGR 60
M D L ++ D+ G E+S T + SR +EL+R+V ++GR
Sbjct: 154 METDDMFLQFEDDLDNNIAGGSSSVGDNTESSSQQTTPTPRRRAQSRLLELERHVAINGR 213
Query: 61 IPIEIDPNLKKPVCNWAVKFRNAISIAVRESFLVRCASIRDVPADCKELVKSRLMEHFDL 120
IP+ I P +KP+ AV+F AI + VR++F VRC DV + E+VK L F L
Sbjct: 214 IPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWTDVGREYIEVVKGDLQRFFVL 273
Query: 121 DLSKPAMIRFLARQMQNIFKEYRTDLHRHYKKYDTPEEALANPPDRL 168
D + AM RF+ QM FKE+R D H+H+KKY PEEA ANPP+ L
Sbjct: 274 DFNDQAMNRFVEHQMLTTFKEFRADCHKHFKKYSDPEEARANPPNAL 320
BLAST of Lcy10g005560 vs. NCBI nr
Match:
TYK02173.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK10967.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 121.3 bits (303), Expect = 9.1e-24
Identity = 67/167 (40.12%), Postives = 92/167 (55.09%), Query Frame = 0
Query: 1 MTGQDQLLDAAEEYDDEDLGQLGQTSSARETSDGNNTANRTTHSYSRNIELDRYVVLHGR 60
M D L ++ D+ G E+S T + SR +EL+R+V ++GR
Sbjct: 1 METDDMFLQFEDDLDNNIAGGSSSVGDNTESSSQQTTPTPRRRAQSRLLELERHVAINGR 60
Query: 61 IPIEIDPNLKKPVCNWAVKFRNAISIAVRESFLVRCASIRDVPADCKELVKSRLMEHFDL 120
IP+ I P +KP+ AV+F AI + VR++F VRC DV + E+VK L F L
Sbjct: 61 IPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWTDVGREYIEVVKGDLQRFFVL 120
Query: 121 DLSKPAMIRFLARQMQNIFKEYRTDLHRHYKKYDTPEEALANPPDRL 168
D + AM RF+ QM FKE+R D H+H+KKY PEEA ANPP+ L
Sbjct: 121 DFNDQAMNRFVEHQMLTTFKEFRADCHKHFKKYSDPEEARANPPNAL 167
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7UVG1 | 3.4e-24 | 42.68 | CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
| A0A5D3C6Z8 | 4.4e-24 | 40.12 | CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
| A0A5D3CG61 | 4.4e-24 | 40.12 | CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
| A0A5D3DFY2 | 4.4e-24 | 40.12 | CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
| A0A5D3CI90 | 4.4e-24 | 40.12 | CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_038887409.1 | 2.6e-26 | 43.33 | poly [ADP-ribose] polymerase 1-like isoform X2 [Benincasa hispida] | [more] |
| XP_038902987.1 | 4.4e-26 | 41.86 | uncharacterized protein LOC120089695 [Benincasa hispida] | [more] |
| KAA0057529.1 | 7.0e-24 | 42.68 | CACTA en-spm transposon protein [Cucumis melo var. makuwa] | [more] |
| TYK22506.1 | 9.1e-24 | 40.12 | CACTA en-spm transposon protein [Cucumis melo var. makuwa] | [more] |
| TYK02173.1 | 9.1e-24 | 40.12 | CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK10967.1 CACTA en-... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
