Lcy10g005560.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy10g005560.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	CACTA en-spm transposon protein
Location	Chr10: 16872768 .. 16873515 (-)
Sequence length	588
RNA-Seq Expression	Lcy10g005560.1
Synteny	Lcy10g005560.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGGTCAAGACCAATTGCTCGACGCTGCCGAAGAATATGATGATGAGGATTTGGGCCAGTTAGGCCAGACATCGTCCGCAAGAGAGACTTCAGGTTAATTTACATTATTTCTCTTTTTATGTTCATTGGCATATGACATGTTATTGTAATTTTTTGTTCTTTGTTTTTTCTTGGATTCAGATGGTAATAATACGGCTAATAGGACGACACATTCCTATTCGCGTAATATTGAGTTGGATAGATATGTCGTACTTCATGGGCGAATTCCCATTGAAATTGACCCTAATTTGAAGAAGCCAGTTTGCAACTGGGCTGTGAAGTTTAGAAACGCAATTAGTATAGCTGTGAGAGAATCATTTCTGGTTCGTTGCGCATCAATCAGAGATGTACCGGCAGATTGTAAGGAACTTGTCAAAAGTCGATTGATGGTAAGTTAAACACGTCATTAATTCTGAAAACTTTTTATAACCTATGTATTATAATAAATGTACCTCTATGTAGGAGCATTTCGATTTGGACCTATCCAAACCAGCAATGATCAGGTTCCTTGCACGACAAATGCAAAACATATTCAAAGAGTATCGGACAGATTTACACAGACACTACAAAAAATATGACACTCCTGAAGAGGCACTTGCAAACCCACCAGATCGGCTTAAAGATGCCATTGAAGTTGGCATTTTCTATGTACTAAGTTCGAGACCCCTGAGTGGAAGGCATGTTCTCATTTCTCCTGATATATAG

mRNA sequence

ATGACGGGTCAAGACCAATTGCTCGACGCTGCCGAAGAATATGATGATGAGGATTTGGGCCAGTTAGGCCAGACATCGTCCGCAAGAGAGACTTCAGATGGTAATAATACGGCTAATAGGACGACACATTCCTATTCGCGTAATATTGAGTTGGATAGATATGTCGTACTTCATGGGCGAATTCCCATTGAAATTGACCCTAATTTGAAGAAGCCAGTTTGCAACTGGGCTGTGAAGTTTAGAAACGCAATTAGTATAGCTGTGAGAGAATCATTTCTGGTTCGTTGCGCATCAATCAGAGATGTACCGGCAGATTGTAAGGAACTTGTCAAAAGTCGATTGATGGAGCATTTCGATTTGGACCTATCCAAACCAGCAATGATCAGGTTCCTTGCACGACAAATGCAAAACATATTCAAAGAGTATCGGACAGATTTACACAGACACTACAAAAAATATGACACTCCTGAAGAGGCACTTGCAAACCCACCAGATCGGCTTAAAGATGCCATTGAAGTTGGCATTTTCTATGTACTAAGTTCGAGACCCCTGAGTGGAAGGCATGTTCTCATTTCTCCTGATATATAG

Coding sequence (CDS)

ATGACGGGTCAAGACCAATTGCTCGACGCTGCCGAAGAATATGATGATGAGGATTTGGGCCAGTTAGGCCAGACATCGTCCGCAAGAGAGACTTCAGATGGTAATAATACGGCTAATAGGACGACACATTCCTATTCGCGTAATATTGAGTTGGATAGATATGTCGTACTTCATGGGCGAATTCCCATTGAAATTGACCCTAATTTGAAGAAGCCAGTTTGCAACTGGGCTGTGAAGTTTAGAAACGCAATTAGTATAGCTGTGAGAGAATCATTTCTGGTTCGTTGCGCATCAATCAGAGATGTACCGGCAGATTGTAAGGAACTTGTCAAAAGTCGATTGATGGAGCATTTCGATTTGGACCTATCCAAACCAGCAATGATCAGGTTCCTTGCACGACAAATGCAAAACATATTCAAAGAGTATCGGACAGATTTACACAGACACTACAAAAAATATGACACTCCTGAAGAGGCACTTGCAAACCCACCAGATCGGCTTAAAGATGCCATTGAAGTTGGCATTTTCTATGTACTAAGTTCGAGACCCCTGAGTGGAAGGCATGTTCTCATTTCTCCTGATATATAG

Protein sequence

MTGQDQLLDAAEEYDDEDLGQLGQTSSARETSDGNNTANRTTHSYSRNIELDRYVVLHGRIPIEIDPNLKKPVCNWAVKFRNAISIAVRESFLVRCASIRDVPADCKELVKSRLMEHFDLDLSKPAMIRFLARQMQNIFKEYRTDLHRHYKKYDTPEEALANPPDRLKDAIEVGIFYVLSSRPLSGRHVLISPDI

Homology

[Close]

BLAST of Lcy10g005560.1 vs. ExPASy TrEMBL
Match: A0A5A7UVG1 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G004200 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 3.4e-24
Identity = 67/157 (42.68%), Postives = 96/157 (61.15%), Query Frame = 0


Query: 16  DEDLGQLGQTSSARETSDGNNTANRTT-----HSYSRNIELDRYVVLHGRIPIEIDPNLK 75
           +EDL  + + SS+   +   +++ +TT      + SR +EL+R+V ++GRIP+ I P  +
Sbjct: 11  EEDLDNIAEGSSSVSDNTVGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPEAE 70

Query: 76  KPVCNWAVKFRNAISIAVRESFLVRCASIRDVPADCKELVKSRLMEHFDLDLSKPAMIRF 135
           KP+   AV+F  AI + VR++F VRC    DV  +  E+VK  L   F LD +  AM RF
Sbjct: 71  KPISPHAVRFSQAIGVCVRKTFPVRCLKWADVGREYIEVVKGDLQRLFVLDFNDQAMNRF 130

Query: 136 LARQMQNIFKEYRTDLHRHYKKYDTPEEALANPPDRL 168
           +  QM   FKE+R D HRH+KKY  PEEA ANPP+ L
Sbjct: 131 VEHQMLTTFKEFRVDCHRHFKKYSDPEEARANPPNAL 167

[Close]

BLAST of Lcy10g005560.1 vs. ExPASy TrEMBL
Match: A0A5D3C6Z8 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00370 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.4e-24
Identity = 67/167 (40.12%), Postives = 92/167 (55.09%), Query Frame = 0


Query: 1   MTGQDQLLDAAEEYDDEDLGQLGQTSSARETSDGNNTANRTTHSYSRNIELDRYVVLHGR 60
           M   D  L   ++ D+   G         E+S    T      + SR +EL+R+V ++GR
Sbjct: 1   METDDMFLQFEDDLDNNIAGGSSSVGDNTESSSQQTTPTPRRRAQSRLLELERHVAINGR 60

Query: 61  IPIEIDPNLKKPVCNWAVKFRNAISIAVRESFLVRCASIRDVPADCKELVKSRLMEHFDL 120
           IP+ I P  +KP+   AV+F  AI + VR++F VRC    DV  +  E+VK  L   F L
Sbjct: 61  IPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWTDVGREYIEVVKGDLQRFFVL 120

Query: 121 DLSKPAMIRFLARQMQNIFKEYRTDLHRHYKKYDTPEEALANPPDRL 168
           D +  AM RF+  QM   FKE+R D H+H+KKY  PEEA ANPP+ L
Sbjct: 121 DFNDQAMNRFVEHQMLTTFKEFRADCHKHFKKYSDPEEARANPPNAL 167

[Close]

BLAST of Lcy10g005560.1 vs. ExPASy TrEMBL
Match: A0A5D3CG61 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold107G00520 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.4e-24
Identity = 67/167 (40.12%), Postives = 92/167 (55.09%), Query Frame = 0


Query: 1   MTGQDQLLDAAEEYDDEDLGQLGQTSSARETSDGNNTANRTTHSYSRNIELDRYVVLHGR 60
           M   D  L   ++ D+   G         E+S    T      + SR +EL+R+V ++GR
Sbjct: 1   METDDMFLQFEDDLDNNIAGGSSSVGDNTESSSQQTTPTPRRRAQSRLLELERHVAINGR 60

Query: 61  IPIEIDPNLKKPVCNWAVKFRNAISIAVRESFLVRCASIRDVPADCKELVKSRLMEHFDL 120
           IP+ I P  +KP+   AV+F  AI + VR++F VRC    DV  +  E+VK  L   F L
Sbjct: 61  IPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWTDVGREYIEVVKGDLQRFFVL 120

Query: 121 DLSKPAMIRFLARQMQNIFKEYRTDLHRHYKKYDTPEEALANPPDRL 168
           D +  AM RF+  QM   FKE+R D H+H+KKY  PEEA ANPP+ L
Sbjct: 121 DFNDQAMNRFVEHQMLTTFKEFRADCHKHFKKYSDPEEARANPPNAL 167

[Close]

BLAST of Lcy10g005560.1 vs. ExPASy TrEMBL
Match: A0A5D3DFY2 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00030 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.4e-24
Identity = 67/167 (40.12%), Postives = 92/167 (55.09%), Query Frame = 0


Query: 1   MTGQDQLLDAAEEYDDEDLGQLGQTSSARETSDGNNTANRTTHSYSRNIELDRYVVLHGR 60
           M   D  L   ++ D+   G         E+S    T      + SR +EL+R+V ++GR
Sbjct: 154 METDDMFLQFEDDLDNNIAGGSSSVGDNTESSSQQTTPTPRRRAQSRLLELERHVAINGR 213

Query: 61  IPIEIDPNLKKPVCNWAVKFRNAISIAVRESFLVRCASIRDVPADCKELVKSRLMEHFDL 120
           IP+ I P  +KP+   AV+F  AI + VR++F VRC    DV  +  E+VK  L   F L
Sbjct: 214 IPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWTDVGREYIEVVKGDLQRFFVL 273

Query: 121 DLSKPAMIRFLARQMQNIFKEYRTDLHRHYKKYDTPEEALANPPDRL 168
           D +  AM RF+  QM   FKE+R D H+H+KKY  PEEA ANPP+ L
Sbjct: 274 DFNDQAMNRFVEHQMLTTFKEFRADCHKHFKKYSDPEEARANPPNAL 320

[Close]

BLAST of Lcy10g005560.1 vs. ExPASy TrEMBL
Match: A0A5D3CI90 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002690 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.4e-24
Identity = 67/167 (40.12%), Postives = 92/167 (55.09%), Query Frame = 0


Query: 1   MTGQDQLLDAAEEYDDEDLGQLGQTSSARETSDGNNTANRTTHSYSRNIELDRYVVLHGR 60
           M   D  L   ++ D+   G         E+S    T      + SR +EL+R+V ++GR
Sbjct: 154 METDDMFLQFEDDLDNNIAGGSSSVGDNTESSSQQTTPTPRRRAQSRLLELERHVAINGR 213

Query: 61  IPIEIDPNLKKPVCNWAVKFRNAISIAVRESFLVRCASIRDVPADCKELVKSRLMEHFDL 120
           IP+ I P  +KP+   AV+F  AI + VR++F VRC    DV  +  E+VK  L   F L
Sbjct: 214 IPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWTDVGREYIEVVKGDLQRFFVL 273

Query: 121 DLSKPAMIRFLARQMQNIFKEYRTDLHRHYKKYDTPEEALANPPDRL 168
           D +  AM RF+  QM   FKE+R D H+H+KKY  PEEA ANPP+ L
Sbjct: 274 DFNDQAMNRFVEHQMLTTFKEFRADCHKHFKKYSDPEEARANPPNAL 320

[Close]

BLAST of Lcy10g005560.1 vs. NCBI nr
Match: XP_038887409.1 (poly [ADP-ribose] polymerase 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 129.8 bits (325), Expect = 2.6e-26
Identity = 65/150 (43.33%), Postives = 97/150 (64.67%), Query Frame = 0


Query: 23  GQTSSARETSDGNNTANRTTHSYSRNIELDRYVVLHGRIPIEIDPNLKKPVCNWAVKFRN 82
           G  S +R+ S G     R T  +SRN+ELDR+V +HGRI IEID  + KPVC  A KF N
Sbjct: 554 GSRSCSRQVSRGE---KRRTRGHSRNLELDRHVNIHGRIRIEIDEEVGKPVCANATKFSN 613

Query: 83  AISIAVRESFLVRCASIRDVPADCKELVKSRLMEHFDLDLSKPAMIRFLARQMQNIFKEY 142
           AI    R +  +RC    DV  + ++LV  +L+ +FD D+ K  + +++ +++QN FKEY
Sbjct: 614 AIGTIARNTIPLRCKDWSDVSKEVRDLVVDQLLSYFDFDVGKKHVKKYVLQRVQNTFKEY 673

Query: 143 RTDLHRHYKKYDTPEEALANPPDRLKDAIE 173
           R+DL++HY+++  P+EA A PP R+ DA +
Sbjct: 674 RSDLYKHYRRFKDPKEARACPPKRITDATD 700

[Close]

BLAST of Lcy10g005560.1 vs. NCBI nr
Match: XP_038902987.1 (uncharacterized protein LOC120089695 [Benincasa hispida])

HSP 1 Score: 129.0 bits (323), Expect = 4.4e-26
Identity = 72/172 (41.86%), Postives = 108/172 (62.79%), Query Frame = 0


Query: 1   MTGQDQLLDAAEEYDDEDLGQLGQTSSARETSDGNNTANRTTHSYSRNIELDRYVVLHGR 60
           M+  ++  +A EE+  ++L    + SS  +TSD ++T+NR    +SRNI+L++YV  HG 
Sbjct: 1   MSTPNRQREADEEF--QELYLNNKVSSVGDTSDSSSTSNRKKREHSRNIKLEKYVQKHGI 60

Query: 61  IPIEIDPNLKKPVCNWAVKFRNAISIAVRESFLVRCASIRDVPADCKELVKSRLMEHFDL 120
           I I I+    KP+   +V+F NAI +AVR +F V C +  +VP +  EL K +L+ HF L
Sbjct: 61  IIIVINEGETKPISKHSVRFSNAIGVAVRFAFPVHCRTFTEVPNEFIELAKIQLLAHFKL 120

Query: 121 DLSKPAMIRFLARQMQNIFKEYRTDLHRHYKKYDTPEEALANPPDRLKDAIE 173
           DLS   + RF+  QMQN FKE+R DL+RHY+K   P++  A+ P  LK+  E
Sbjct: 121 DLSSQRLNRFIEHQMQNSFKEFRADLNRHYRKCGNPQQVCASLPSWLKNRPE 170

[Close]

BLAST of Lcy10g005560.1 vs. NCBI nr
Match: KAA0057529.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 121.7 bits (304), Expect = 7.0e-24
Identity = 67/157 (42.68%), Postives = 96/157 (61.15%), Query Frame = 0


Query: 16  DEDLGQLGQTSSARETSDGNNTANRTT-----HSYSRNIELDRYVVLHGRIPIEIDPNLK 75
           +EDL  + + SS+   +   +++ +TT      + SR +EL+R+V ++GRIP+ I P  +
Sbjct: 11  EEDLDNIAEGSSSVSDNTVGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPEAE 70

Query: 76  KPVCNWAVKFRNAISIAVRESFLVRCASIRDVPADCKELVKSRLMEHFDLDLSKPAMIRF 135
           KP+   AV+F  AI + VR++F VRC    DV  +  E+VK  L   F LD +  AM RF
Sbjct: 71  KPISPHAVRFSQAIGVCVRKTFPVRCLKWADVGREYIEVVKGDLQRLFVLDFNDQAMNRF 130

Query: 136 LARQMQNIFKEYRTDLHRHYKKYDTPEEALANPPDRL 168
           +  QM   FKE+R D HRH+KKY  PEEA ANPP+ L
Sbjct: 131 VEHQMLTTFKEFRVDCHRHFKKYSDPEEARANPPNAL 167

[Close]

BLAST of Lcy10g005560.1 vs. NCBI nr
Match: TYK22506.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 121.3 bits (303), Expect = 9.1e-24
Identity = 67/167 (40.12%), Postives = 92/167 (55.09%), Query Frame = 0


Query: 1   MTGQDQLLDAAEEYDDEDLGQLGQTSSARETSDGNNTANRTTHSYSRNIELDRYVVLHGR 60
           M   D  L   ++ D+   G         E+S    T      + SR +EL+R+V ++GR
Sbjct: 154 METDDMFLQFEDDLDNNIAGGSSSVGDNTESSSQQTTPTPRRRAQSRLLELERHVAINGR 213

Query: 61  IPIEIDPNLKKPVCNWAVKFRNAISIAVRESFLVRCASIRDVPADCKELVKSRLMEHFDL 120
           IP+ I P  +KP+   AV+F  AI + VR++F VRC    DV  +  E+VK  L   F L
Sbjct: 214 IPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWTDVGREYIEVVKGDLQRFFVL 273

Query: 121 DLSKPAMIRFLARQMQNIFKEYRTDLHRHYKKYDTPEEALANPPDRL 168
           D +  AM RF+  QM   FKE+R D H+H+KKY  PEEA ANPP+ L
Sbjct: 274 DFNDQAMNRFVEHQMLTTFKEFRADCHKHFKKYSDPEEARANPPNAL 320

[Close]

BLAST of Lcy10g005560.1 vs. NCBI nr
Match: TYK02173.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK10967.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 121.3 bits (303), Expect = 9.1e-24
Identity = 67/167 (40.12%), Postives = 92/167 (55.09%), Query Frame = 0


Query: 1   MTGQDQLLDAAEEYDDEDLGQLGQTSSARETSDGNNTANRTTHSYSRNIELDRYVVLHGR 60
           M   D  L   ++ D+   G         E+S    T      + SR +EL+R+V ++GR
Sbjct: 1   METDDMFLQFEDDLDNNIAGGSSSVGDNTESSSQQTTPTPRRRAQSRLLELERHVAINGR 60

Query: 61  IPIEIDPNLKKPVCNWAVKFRNAISIAVRESFLVRCASIRDVPADCKELVKSRLMEHFDL 120
           IP+ I P  +KP+   AV+F  AI + VR++F VRC    DV  +  E+VK  L   F L
Sbjct: 61  IPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWTDVGREYIEVVKGDLQRFFVL 120

Query: 121 DLSKPAMIRFLARQMQNIFKEYRTDLHRHYKKYDTPEEALANPPDRL 168
           D +  AM RF+  QM   FKE+R D H+H+KKY  PEEA ANPP+ L
Sbjct: 121 DFNDQAMNRFVEHQMLTTFKEFRADCHKHFKKYSDPEEARANPPNAL 167

The following BLAST results are available for this feature:

BLAST of Lcy10g005560.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy10g005560.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UVG1	3.4e-24	42.68	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3C6Z8	4.4e-24	40.12	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3CG61	4.4e-24	40.12	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3DFY2	4.4e-24	40.12	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3CI90	4.4e-24	40.12	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of Lcy10g005560.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887409.1	2.6e-26	43.33	poly [ADP-ribose] polymerase 1-like isoform X2 [Benincasa hispida]	[more]
XP_038902987.1	4.4e-26	41.86	uncharacterized protein LOC120089695 [Benincasa hispida]	[more]
KAA0057529.1	7.0e-24	42.68	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
TYK22506.1	9.1e-24	40.12	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
TYK02173.1	9.1e-24	40.12	CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK10967.1 CACTA en-...	[more]

BLAST of Lcy10g005560.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..43

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy10g005560	Lcy10g005560	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy10g005560.1.exon3	Lcy10g005560.1.exon3	exon
Lcy10g005560.1.exon2	Lcy10g005560.1.exon2	exon
Lcy10g005560.1.exon1	Lcy10g005560.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy10g005560.1.cds3	Lcy10g005560.1.cds3	CDS
Lcy10g005560.1.cds2	Lcy10g005560.1.cds2	CDS
Lcy10g005560.1.cds1	Lcy10g005560.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy10g005560.1	Lcy10g005560.1-protein	polypeptide