Lcy04g022710 (gene) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCGCTGCCACAATGGCTCTCTCCTCCCCATCTCTGGCCGGCAAGGCCGTGAAGCTTTCCCCCAACGCCCCTGAGATTCAGGGCAATGGAAGAGTCAGCATGAGGAAGACTGCCAGCAAGCCAGTTTCCTCCGGCAGCCCATGGTACGGCCCCGACCGTGTTAAGTACTTGGGCCCATTCTCCGGCGAGCCACCGTCCTACCTTACCGGAGAGTTCCCCGGTGACTACGGCTGGGACACTGCTGGACTTTCAGCCGATCCCGAGACATTCGCCAAGAACCGTGAGCTGGAAGTGATCCACTCCAGATGGGCCATGCTTGGAGCTTTGGGTTGTGTCTTCCCCGAGCTTCTGTCCCGCAATGGTGTGAAGTTTGGCGAGGCTGTGTGGTTCAAGGCTGGTTCTCAGATCTTCAGCGAGGGAGGCCTCGACTACTTGGGCAACCCGAGCTTGGTCCACGCACAGAGCATTTTGGCCATCTGGGCCTGCCAGGTCGTGTTGATGGGCGCCGTCGAGGGCTACCGTATTGCCGGCGGCCCACTCGGAGAGATCACCGACCCCATCTACCCAGGTGGAAGCTTCGACCCATTGGGTTTGGCTGATGACCCAGAGGCCTTCGCTGAGCTCAAGGTGAAGGAGCTCAAGAATGGAAGGCTGGCCATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTTACTGGAAAGGGTCCTTTGGAGAACTTGGCTGACCACCTTGCCGACCCAGTCAACAACAATGCTTGGGCCTATGCCACAAACTTTGTTCCCGGAAAGTGAGAGTCTTAGGATTCAGAGAGTGAGAAATGAACTTGTGTTTAATTAAACCATTGATGGTGGTGTAAATTTCGGGTTTGAACAATTGAGTGCTTGGTTTGAATGGATTTCATTCTGATTTTTCAATAATAACAAAGCAATGATCTATTTCATGGAAGGAGAACAATCTAGTTTATGCACCAATTAAAATACGATTCAGGTTGAAAGAGAACTAAGAGTTTATAGTTTGGAGAGAAATACGATGGTGATGGTAAAACAAGCTAAATCTGTCTTTTAACTAAGAGGAGTGTTTTCTTCTAACATTGAAGTCTAATTTTGTGCCAAATGCGTTATTTCTCTTTGGAAAGGTACTGGATTCCACTTCCCGGCTTGCAAAATGTGCTTCAGAAGGCTCTTAAATTTTCATTCCAGAAAATGAAAAATGCATAA ATGGCCGCTGCCACAATGGCTCTCTCCTCCCCATCTCTGGCCGGCAAGGCCGTGAAGCTTTCCCCCAACGCCCCTGAGATTCAGGGCAATGGAAGAGTCAGCATGAGGAAGACTGCCAGCAAGCCAGTTTCCTCCGGCAGCCCATGGTACTGGATTCCACTTCCCGGCTTGCAAAATGTGCTTCAGAAGGCTCTTAAATTTTCATTCCAGAAAATGAAAAATGCATAA ATGGCCGCTGCCACAATGGCTCTCTCCTCCCCATCTCTGGCCGGCAAGGCCGTGAAGCTTTCCCCCAACGCCCCTGAGATTCAGGGCAATGGAAGAGTCAGCATGAGGAAGACTGCCAGCAAGCCAGTTTCCTCCGGCAGCCCATGGTACTGGATTCCACTTCCCGGCTTGCAAAATGTGCTTCAGAAGGCTCTTAAATTTTCATTCCAGAAAATGAAAAATGCATAA MAAATMALSSPSLAGKAVKLSPNAPEIQGNGRVSMRKTASKPVSSGSPWYWIPLPGLQNVLQKALKFSFQKMKNA Homology
BLAST of Lcy04g022710 vs. ExPASy Swiss-Prot
Match: P27493 (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum OX=4097 GN=CAB21 PE=2 SV=1) HSP 1 Score: 83.6 bits (205), Expect = 1.1e-15 Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = 0
BLAST of Lcy04g022710 vs. ExPASy Swiss-Prot
Match: P27495 (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum OX=4097 GN=CAB40 PE=2 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 2.9e-13 Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 0
BLAST of Lcy04g022710 vs. ExPASy Swiss-Prot
Match: P04783 (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. OX=4104 GN=CAB91R PE=3 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 8.4e-13 Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 0
BLAST of Lcy04g022710 vs. ExPASy Swiss-Prot
Match: P12469 (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 GN=CABC PE=3 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 1.4e-12 Identity = 40/52 (76.92%), Postives = 45/52 (86.54%), Query Frame = 0
BLAST of Lcy04g022710 vs. ExPASy Swiss-Prot
Match: P27496 (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum OX=4097 GN=CAB50 PE=2 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 1.9e-12 Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 0
BLAST of Lcy04g022710 vs. ExPASy TrEMBL
Match: A0A5A7UBM9 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008840 PE=3 SV=1) HSP 1 Score: 90.9 bits (224), Expect = 2.5e-15 Identity = 45/50 (90.00%), Postives = 49/50 (98.00%), Query Frame = 0
BLAST of Lcy04g022710 vs. ExPASy TrEMBL
Match: A0A1S3AZW8 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484385 PE=3 SV=1) HSP 1 Score: 90.9 bits (224), Expect = 2.5e-15 Identity = 45/50 (90.00%), Postives = 49/50 (98.00%), Query Frame = 0
BLAST of Lcy04g022710 vs. ExPASy TrEMBL
Match: A0A6M3WGX2 (Chlorophyll a-b binding protein, chloroplastic OS=Carica papaya OX=3649 GN=Lhcb1.1 PE=3 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 1.6e-14 Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 0
BLAST of Lcy04g022710 vs. ExPASy TrEMBL
Match: A0A7J9M9P7 (Chlorophyll a-b binding protein, chloroplastic OS=Gossypium schwendimanii OX=34291 GN=Goshw_002856 PE=3 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 1.6e-14 Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0
BLAST of Lcy04g022710 vs. ExPASy TrEMBL
Match: A0A5D3CNU3 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008830 PE=3 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 2.1e-14 Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = 0
BLAST of Lcy04g022710 vs. NCBI nr
Match: XP_038882053.1 (chlorophyll a-b binding protein of LHCII type 1-like [Benincasa hispida]) HSP 1 Score: 92.4 bits (228), Expect = 1.7e-15 Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 0
BLAST of Lcy04g022710 vs. NCBI nr
Match: XP_038882052.1 (chlorophyll a-b binding protein of LHCII type 1-like [Benincasa hispida]) HSP 1 Score: 91.3 bits (225), Expect = 3.9e-15 Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 0
BLAST of Lcy04g022710 vs. NCBI nr
Match: XP_008439658.1 (PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo] >KAA0052560.1 chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo var. makuwa] >TYK13266.1 chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo var. makuwa]) HSP 1 Score: 90.9 bits (224), Expect = 5.1e-15 Identity = 45/50 (90.00%), Postives = 49/50 (98.00%), Query Frame = 0
BLAST of Lcy04g022710 vs. NCBI nr
Match: XP_021904725.1 (chlorophyll a-b binding protein of LHCII type 1 [Carica papaya] >QJF74546.1 light-harvesting chlorophyll a/b-binding protein [Carica papaya]) HSP 1 Score: 88.2 bits (217), Expect = 3.3e-14 Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 0
BLAST of Lcy04g022710 vs. NCBI nr
Match: MBA0867684.1 (hypothetical protein [Gossypium schwendimanii]) HSP 1 Score: 88.2 bits (217), Expect = 3.3e-14 Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0
BLAST of Lcy04g022710 vs. TAIR 10
Match: AT1G29930.1 (chlorophyll A/B binding protein 1 ) HSP 1 Score: 69.7 bits (169), Expect = 1.1e-12 Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 0
BLAST of Lcy04g022710 vs. TAIR 10
Match: AT1G29910.1 (chlorophyll A/B binding protein 3 ) HSP 1 Score: 67.8 bits (164), Expect = 4.3e-12 Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 0
BLAST of Lcy04g022710 vs. TAIR 10
Match: AT1G29920.1 (chlorophyll A/B-binding protein 2 ) HSP 1 Score: 67.8 bits (164), Expect = 4.3e-12 Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 0
BLAST of Lcy04g022710 vs. TAIR 10
Match: AT2G34430.1 (light-harvesting chlorophyll-protein complex II subunit B1 ) HSP 1 Score: 65.1 bits (157), Expect = 2.8e-11 Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 0
BLAST of Lcy04g022710 vs. TAIR 10
Match: AT2G34420.1 (photosystem II light harvesting complex gene B1B2 ) HSP 1 Score: 59.3 bits (142), Expect = 1.5e-09 Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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