Lcy04g022710 (gene) Sponge gourd (P93075) v1

Overview
NameLcy04g022710
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionChlorophyll a-b binding protein, chloroplastic
LocationChr04: 53864128 .. 53865351 (+)
RNA-Seq ExpressionLcy04g022710
SyntenyLcy04g022710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCTGCCACAATGGCTCTCTCCTCCCCATCTCTGGCCGGCAAGGCCGTGAAGCTTTCCCCCAACGCCCCTGAGATTCAGGGCAATGGAAGAGTCAGCATGAGGAAGACTGCCAGCAAGCCAGTTTCCTCCGGCAGCCCATGGTACGGCCCCGACCGTGTTAAGTACTTGGGCCCATTCTCCGGCGAGCCACCGTCCTACCTTACCGGAGAGTTCCCCGGTGACTACGGCTGGGACACTGCTGGACTTTCAGCCGATCCCGAGACATTCGCCAAGAACCGTGAGCTGGAAGTGATCCACTCCAGATGGGCCATGCTTGGAGCTTTGGGTTGTGTCTTCCCCGAGCTTCTGTCCCGCAATGGTGTGAAGTTTGGCGAGGCTGTGTGGTTCAAGGCTGGTTCTCAGATCTTCAGCGAGGGAGGCCTCGACTACTTGGGCAACCCGAGCTTGGTCCACGCACAGAGCATTTTGGCCATCTGGGCCTGCCAGGTCGTGTTGATGGGCGCCGTCGAGGGCTACCGTATTGCCGGCGGCCCACTCGGAGAGATCACCGACCCCATCTACCCAGGTGGAAGCTTCGACCCATTGGGTTTGGCTGATGACCCAGAGGCCTTCGCTGAGCTCAAGGTGAAGGAGCTCAAGAATGGAAGGCTGGCCATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTTACTGGAAAGGGTCCTTTGGAGAACTTGGCTGACCACCTTGCCGACCCAGTCAACAACAATGCTTGGGCCTATGCCACAAACTTTGTTCCCGGAAAGTGAGAGTCTTAGGATTCAGAGAGTGAGAAATGAACTTGTGTTTAATTAAACCATTGATGGTGGTGTAAATTTCGGGTTTGAACAATTGAGTGCTTGGTTTGAATGGATTTCATTCTGATTTTTCAATAATAACAAAGCAATGATCTATTTCATGGAAGGAGAACAATCTAGTTTATGCACCAATTAAAATACGATTCAGGTTGAAAGAGAACTAAGAGTTTATAGTTTGGAGAGAAATACGATGGTGATGGTAAAACAAGCTAAATCTGTCTTTTAACTAAGAGGAGTGTTTTCTTCTAACATTGAAGTCTAATTTTGTGCCAAATGCGTTATTTCTCTTTGGAAAGGTACTGGATTCCACTTCCCGGCTTGCAAAATGTGCTTCAGAAGGCTCTTAAATTTTCATTCCAGAAAATGAAAAATGCATAA

mRNA sequence

ATGGCCGCTGCCACAATGGCTCTCTCCTCCCCATCTCTGGCCGGCAAGGCCGTGAAGCTTTCCCCCAACGCCCCTGAGATTCAGGGCAATGGAAGAGTCAGCATGAGGAAGACTGCCAGCAAGCCAGTTTCCTCCGGCAGCCCATGGTACTGGATTCCACTTCCCGGCTTGCAAAATGTGCTTCAGAAGGCTCTTAAATTTTCATTCCAGAAAATGAAAAATGCATAA

Coding sequence (CDS)

ATGGCCGCTGCCACAATGGCTCTCTCCTCCCCATCTCTGGCCGGCAAGGCCGTGAAGCTTTCCCCCAACGCCCCTGAGATTCAGGGCAATGGAAGAGTCAGCATGAGGAAGACTGCCAGCAAGCCAGTTTCCTCCGGCAGCCCATGGTACTGGATTCCACTTCCCGGCTTGCAAAATGTGCTTCAGAAGGCTCTTAAATTTTCATTCCAGAAAATGAAAAATGCATAA

Protein sequence

MAAATMALSSPSLAGKAVKLSPNAPEIQGNGRVSMRKTASKPVSSGSPWYWIPLPGLQNVLQKALKFSFQKMKNA
Homology
BLAST of Lcy04g022710 vs. ExPASy Swiss-Prot
Match: P27493 (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum OX=4097 GN=CAB21 PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.1e-15
Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = 0

Query: 1  MAAATMALSSPSLAGKAVKLSPNAPEIQGNGRVSMRKTASKPVSSGSPWY 51
          MAAATMALSSPS AG+AVKLSP+APEI GNGRVSMRKT +KPV+S SPWY
Sbjct: 1  MAAATMALSSPSFAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPWY 50

BLAST of Lcy04g022710 vs. ExPASy Swiss-Prot
Match: P27495 (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum OX=4097 GN=CAB40 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.9e-13
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 0

Query: 1  MAAATMALSSPSLAGKAVKLSPNAPEIQGNGRVSMRKTAS--KPVSSGSPWY 51
          MAA+TMALSSPS AGKAVKLSP++ EI GNG+V+MRKTAS  K VSSGSPWY
Sbjct: 1  MAASTMALSSPSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWY 52

BLAST of Lcy04g022710 vs. ExPASy Swiss-Prot
Match: P04783 (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. OX=4104 GN=CAB91R PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 8.4e-13
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 0

Query: 1  MAAATMALSSPSLAGKAVKLSPNAPEIQGNGRVSMRKTA--SKPVSSGSPWY 51
          MAAATMALSSPS AGKAVK SP++ EI GNG+ +MRKT   +KPVSSGSPWY
Sbjct: 1  MAAATMALSSPSFAGKAVKFSPSSSEITGNGKATMRKTVTKAKPVSSGSPWY 52

BLAST of Lcy04g022710 vs. ExPASy Swiss-Prot
Match: P12469 (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 GN=CABC PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.4e-12
Identity = 40/52 (76.92%), Postives = 45/52 (86.54%), Query Frame = 0

Query: 1  MAAATMALSSPSLAGKAVKLSPNAPEIQGNGRVSMRKTAS--KPVSSGSPWY 51
          MAA+TMALSS S AGKAVKLSP++ EI GNG+V+MRKTAS  KPVSS SPWY
Sbjct: 1  MAASTMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSSSPWY 52

BLAST of Lcy04g022710 vs. ExPASy Swiss-Prot
Match: P27496 (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum OX=4097 GN=CAB50 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.9e-12
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 0

Query: 1  MAAATMALSSPSLAGKAVKLSPNAPEIQGNGRVSMRKTA--SKPVSSGSPWY 51
          MAAATMALSS S AGKAVKLSP++ EI GNG+V+MRKT   +KP+SSGSPWY
Sbjct: 1  MAAATMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTVTKAKPLSSGSPWY 52

BLAST of Lcy04g022710 vs. ExPASy TrEMBL
Match: A0A5A7UBM9 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008840 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.5e-15
Identity = 45/50 (90.00%), Postives = 49/50 (98.00%), Query Frame = 0

Query: 1  MAAATMALSSPSLAGKAVKLSPNAPEIQGNGRVSMRKTASKPVSSGSPWY 51
          MAA+TMALSSPSLAGKAVKLSPNAPEIQG GR++MRKTA+KPVSSGSPWY
Sbjct: 1  MAASTMALSSPSLAGKAVKLSPNAPEIQGTGRITMRKTATKPVSSGSPWY 50

BLAST of Lcy04g022710 vs. ExPASy TrEMBL
Match: A0A1S3AZW8 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484385 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.5e-15
Identity = 45/50 (90.00%), Postives = 49/50 (98.00%), Query Frame = 0

Query: 1  MAAATMALSSPSLAGKAVKLSPNAPEIQGNGRVSMRKTASKPVSSGSPWY 51
          MAA+TMALSSPSLAGKAVKLSPNAPEIQG GR++MRKTA+KPVSSGSPWY
Sbjct: 1  MAASTMALSSPSLAGKAVKLSPNAPEIQGTGRITMRKTATKPVSSGSPWY 50

BLAST of Lcy04g022710 vs. ExPASy TrEMBL
Match: A0A6M3WGX2 (Chlorophyll a-b binding protein, chloroplastic OS=Carica papaya OX=3649 GN=Lhcb1.1 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.6e-14
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 0

Query: 1  MAAATMALSSPSLAGKAVKLSPNAPEIQGNGRVSMRKTASKPVSSGSPWY 51
          MAA+TMALSSPSLAGKAVKLSP+APE+ GNGRVSMRKTASK VSSGSPWY
Sbjct: 1  MAASTMALSSPSLAGKAVKLSPSAPELMGNGRVSMRKTASKSVSSGSPWY 50

BLAST of Lcy04g022710 vs. ExPASy TrEMBL
Match: A0A7J9M9P7 (Chlorophyll a-b binding protein, chloroplastic OS=Gossypium schwendimanii OX=34291 GN=Goshw_002856 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.6e-14
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0

Query: 1  MAAATMALSSPSLAGKAVKLSPNAPEIQGNGRVSMRKTASKPVSSGSPWY 51
          MAAATMALSSPS AGKAVK SP+ PEIQGNGRVSMRKTA+KPV+SGSPWY
Sbjct: 1  MAAATMALSSPSFAGKAVKFSPSTPEIQGNGRVSMRKTATKPVASGSPWY 50

BLAST of Lcy04g022710 vs. ExPASy TrEMBL
Match: A0A5D3CNU3 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008830 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.1e-14
Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = 0

Query: 1  MAAATMALSSPSLAGKAVKLSPNAPEIQGNGRVSMRKTASKPVSSGSPWY 51
          MAA+TMALSSPSLAGKAVKLSPNAPEIQG GR++MRKTA+K VSSGSPWY
Sbjct: 1  MAASTMALSSPSLAGKAVKLSPNAPEIQGTGRITMRKTATKSVSSGSPWY 50

BLAST of Lcy04g022710 vs. NCBI nr
Match: XP_038882053.1 (chlorophyll a-b binding protein of LHCII type 1-like [Benincasa hispida])

HSP 1 Score: 92.4 bits (228), Expect = 1.7e-15
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 0

Query: 1  MAAATMALSSPSLAGKAVKLSPNAPEIQGNGRVSMRKTASKPVSSGSPWY 51
          MAA+TMALSSPSLAGKAVKLSPNAPEIQGNGR+SMRKTASK VSSGSPWY
Sbjct: 1  MAASTMALSSPSLAGKAVKLSPNAPEIQGNGRISMRKTASKSVSSGSPWY 50

BLAST of Lcy04g022710 vs. NCBI nr
Match: XP_038882052.1 (chlorophyll a-b binding protein of LHCII type 1-like [Benincasa hispida])

HSP 1 Score: 91.3 bits (225), Expect = 3.9e-15
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 0

Query: 1  MAAATMALSSPSLAGKAVKLSPNAPEIQGNGRVSMRKTASKPVSSGSPWY 51
          MAA+TMALSSPSLAGKAVKLSPN PEIQGNGRVSMRKTASK VSSGSPWY
Sbjct: 1  MAASTMALSSPSLAGKAVKLSPNTPEIQGNGRVSMRKTASKSVSSGSPWY 50

BLAST of Lcy04g022710 vs. NCBI nr
Match: XP_008439658.1 (PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo] >KAA0052560.1 chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo var. makuwa] >TYK13266.1 chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 5.1e-15
Identity = 45/50 (90.00%), Postives = 49/50 (98.00%), Query Frame = 0

Query: 1  MAAATMALSSPSLAGKAVKLSPNAPEIQGNGRVSMRKTASKPVSSGSPWY 51
          MAA+TMALSSPSLAGKAVKLSPNAPEIQG GR++MRKTA+KPVSSGSPWY
Sbjct: 1  MAASTMALSSPSLAGKAVKLSPNAPEIQGTGRITMRKTATKPVSSGSPWY 50

BLAST of Lcy04g022710 vs. NCBI nr
Match: XP_021904725.1 (chlorophyll a-b binding protein of LHCII type 1 [Carica papaya] >QJF74546.1 light-harvesting chlorophyll a/b-binding protein [Carica papaya])

HSP 1 Score: 88.2 bits (217), Expect = 3.3e-14
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 0

Query: 1  MAAATMALSSPSLAGKAVKLSPNAPEIQGNGRVSMRKTASKPVSSGSPWY 51
          MAA+TMALSSPSLAGKAVKLSP+APE+ GNGRVSMRKTASK VSSGSPWY
Sbjct: 1  MAASTMALSSPSLAGKAVKLSPSAPELMGNGRVSMRKTASKSVSSGSPWY 50

BLAST of Lcy04g022710 vs. NCBI nr
Match: MBA0867684.1 (hypothetical protein [Gossypium schwendimanii])

HSP 1 Score: 88.2 bits (217), Expect = 3.3e-14
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0

Query: 1  MAAATMALSSPSLAGKAVKLSPNAPEIQGNGRVSMRKTASKPVSSGSPWY 51
          MAAATMALSSPS AGKAVK SP+ PEIQGNGRVSMRKTA+KPV+SGSPWY
Sbjct: 1  MAAATMALSSPSFAGKAVKFSPSTPEIQGNGRVSMRKTATKPVASGSPWY 50

BLAST of Lcy04g022710 vs. TAIR 10
Match: AT1G29930.1 (chlorophyll A/B binding protein 1 )

HSP 1 Score: 69.7 bits (169), Expect = 1.1e-12
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 0

Query: 1  MAAATMALSSPSLAGKAVKLSPNAPEIQGNGRVSMRKTASKPVS-SGSPWY 51
          MAA+TMALSSP+ AGKAVKLSP A E+ G+GRV+MRKT +KP   SGSPWY
Sbjct: 1  MAASTMALSSPAFAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWY 51

BLAST of Lcy04g022710 vs. TAIR 10
Match: AT1G29910.1 (chlorophyll A/B binding protein 3 )

HSP 1 Score: 67.8 bits (164), Expect = 4.3e-12
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 0

Query: 1  MAAATMALSSPSLAGKAVKLSPNAPEIQGNGRVSMRKTASKPVS-SGSPWY 51
          MAA+TMALSSP+ AGKAV LSP A E+ G+GRV+MRKT +KP   SGSPWY
Sbjct: 1  MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWY 51

BLAST of Lcy04g022710 vs. TAIR 10
Match: AT1G29920.1 (chlorophyll A/B-binding protein 2 )

HSP 1 Score: 67.8 bits (164), Expect = 4.3e-12
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 0

Query: 1  MAAATMALSSPSLAGKAVKLSPNAPEIQGNGRVSMRKTASKPVS-SGSPWY 51
          MAA+TMALSSP+ AGKAV LSP A E+ G+GRV+MRKT +KP   SGSPWY
Sbjct: 1  MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWY 51

BLAST of Lcy04g022710 vs. TAIR 10
Match: AT2G34430.1 (light-harvesting chlorophyll-protein complex II subunit B1 )

HSP 1 Score: 65.1 bits (157), Expect = 2.8e-11
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 0

Query: 1  MAAATMALSSPSLAGKAVKLSPNAPEIQGNGRVSMRKTASKPVS-SGSPWY 51
          MAA+TMALSSP+L GKAVKLSP A E+ G GR++MRK ASKP   SGSPWY
Sbjct: 1  MAASTMALSSPALTGKAVKLSPAASEVFGTGRITMRK-ASKPTGPSGSPWY 50

BLAST of Lcy04g022710 vs. TAIR 10
Match: AT2G34420.1 (photosystem II light harvesting complex gene B1B2 )

HSP 1 Score: 59.3 bits (142), Expect = 1.5e-09
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 0

Query: 1  MAAATMALSSPSLAGKAVKLSPNAPEIQGNGRVSMRKTASKPVS-SGSPWY 51
          MA++TMALSSP+ AGKAVK  P A ++ G+GRV+MRKT +KP   SGSPWY
Sbjct: 1  MASSTMALSSPAFAGKAVK--PAASDVLGSGRVTMRKTVAKPKGPSGSPWY 49

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P274931.1e-1584.00Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum OX=4097 G... [more]
P274952.9e-1378.85Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum OX=4097 G... [more]
P047838.4e-1375.00Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. OX=4104 GN=CAB... [more]
P124691.4e-1276.92Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia OX... [more]
P274961.9e-1275.00Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum OX=4097 G... [more]
Match NameE-valueIdentityDescription
A0A5A7UBM92.5e-1590.00Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11... [more]
A0A1S3AZW82.5e-1590.00Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103... [more]
A0A6M3WGX21.6e-1490.00Chlorophyll a-b binding protein, chloroplastic OS=Carica papaya OX=3649 GN=Lhcb1... [more]
A0A7J9M9P71.6e-1488.00Chlorophyll a-b binding protein, chloroplastic OS=Gossypium schwendimanii OX=342... [more]
A0A5D3CNU32.1e-1488.00Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11... [more]
Match NameE-valueIdentityDescription
XP_038882053.11.7e-1594.00chlorophyll a-b binding protein of LHCII type 1-like [Benincasa hispida][more]
XP_038882052.13.9e-1594.00chlorophyll a-b binding protein of LHCII type 1-like [Benincasa hispida][more]
XP_008439658.15.1e-1590.00PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo] >... [more]
XP_021904725.13.3e-1490.00chlorophyll a-b binding protein of LHCII type 1 [Carica papaya] >QJF74546.1 ligh... [more]
MBA0867684.13.3e-1488.00hypothetical protein [Gossypium schwendimanii][more]
Match NameE-valueIdentityDescription
AT1G29930.11.1e-1272.55chlorophyll A/B binding protein 1 [more]
AT1G29910.14.3e-1270.59chlorophyll A/B binding protein 3 [more]
AT1G29920.14.3e-1270.59chlorophyll A/B-binding protein 2 [more]
AT2G34430.12.8e-1172.55light-harvesting chlorophyll-protein complex II subunit B1 [more]
AT2G34420.11.5e-0964.71photosystem II light harvesting complex gene B1B2 [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..40
NoneNo IPR availablePANTHERPTHR21649:SF105CHLOROPHYLL A-B BINDING PROTEIN 21, CHLOROPLASTICcoord: 1..50
IPR001344Chlorophyll A-B binding protein, plant and chromistaPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 1..50

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy04g022710.1Lcy04g022710.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009765 photosynthesis, light harvesting
biological_process GO:0018298 protein-chromophore linkage
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009522 photosystem I
cellular_component GO:0009523 photosystem II
cellular_component GO:0016020 membrane
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0046872 metal ion binding