Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGATATCACAGAAACCTCAAATCCTTCCGATTCTTCTGTTCAACCTACAAGTCGATCCATTATTGATCAGTATGATAATCCATATTTTCTACATCATTCCGATAGCACAAATTTGGTTATTGTCTCTGATCCTTTGACCGAATCAAATTATGCCTCATGGAATGGTGCTATGATTCTTGGACTCACCATGAAGAACAAGTTAGGGTTTGTTGATGGTTCTCTTACTCAGCCAATAGGAGATTTGAAAAAGTCGTGGATTATCTGCAACGCGGTTGTCACCGTTTGGATCTCGAACTCTATCTCAAAAGAAATTTCTGCGAGCTTCAATATTACTGATTCTGCGCACGAAATATGGCTCGATCTGCAATAG
mRNA sequence
ATGGTTGATATCACAGAAACCTCAAATCCTTCCGATTCTTCTGTTCAACCTACAAGTCGATCCATTATTGATCAGTATGATAATCCATATTTTCTACATCATTCCGATAGCACAAATTTGGTTATTGTCTCTGATCCTTTGACCGAATCAAATTATGCCTCATGGAATGGTGCTATGATTCTTGGACTCACCATGAAGAACAAGTTAGGGTTTGTTGATGGTTCTCTTACTCAGCCAATAGGAGATTTGAAAAAGTCGTGGATTATCTGCAACGCGGTTGTCACCGTTTGGATCTCGAACTCTATCTCAAAAGAAATTTCTGCGAGCTTCAATATTACTGATTCTGCGCACGAAATATGGCTCGATCTGCAATAG
Coding sequence (CDS)
ATGGTTGATATCACAGAAACCTCAAATCCTTCCGATTCTTCTGTTCAACCTACAAGTCGATCCATTATTGATCAGTATGATAATCCATATTTTCTACATCATTCCGATAGCACAAATTTGGTTATTGTCTCTGATCCTTTGACCGAATCAAATTATGCCTCATGGAATGGTGCTATGATTCTTGGACTCACCATGAAGAACAAGTTAGGGTTTGTTGATGGTTCTCTTACTCAGCCAATAGGAGATTTGAAAAAGTCGTGGATTATCTGCAACGCGGTTGTCACCGTTTGGATCTCGAACTCTATCTCAAAAGAAATTTCTGCGAGCTTCAATATTACTGATTCTGCGCACGAAATATGGCTCGATCTGCAATAG
Protein sequence
MVDITETSNPSDSSVQPTSRSIIDQYDNPYFLHHSDSTNLVIVSDPLTESNYASWNGAMILGLTMKNKLGFVDGSLTQPIGDLKKSWIICNAVVTVWISNSISKEISASFNITDSAHEIWLDLQ
Homology
BLAST of Lcy02g006740 vs. ExPASy TrEMBL
Match:
A0A6J1DIP8 (uncharacterized protein LOC111020399 OS=Momordica charantia OX=3673 GN=LOC111020399 PE=4 SV=1)
HSP 1 Score: 150.6 bits (379), Expect = 4.3e-33
Identity = 69/102 (67.65%), Postives = 84/102 (82.35%), Query Frame = 0
Query: 23 IDQYDNPYFLHHSDSTNLVIVSDPLTESNYASWNGAMILGLTMKNKLGFVDGSLTQPIGD 82
I+QY NPYFLHHSD+T+LV+VSDPLT NY SW+ +M++ LT+KNK+GFVDGS+ +P GD
Sbjct: 21 IEQYTNPYFLHHSDNTSLVLVSDPLTNENYTSWSRSMLIALTVKNKVGFVDGSIVRPTGD 80
Query: 83 LKKSWIICNAVVTVWISNSISKEISASFNITDSAHEIWLDLQ 125
L SWIICN VV WI NS+SKEISAS +DSA EIWLDL+
Sbjct: 81 LLHSWIICNNVVISWILNSLSKEISASILFSDSAREIWLDLK 122
BLAST of Lcy02g006740 vs. ExPASy TrEMBL
Match:
A0A6J1DNP7 (uncharacterized protein LOC111022065 OS=Momordica charantia OX=3673 GN=LOC111022065 PE=4 SV=1)
HSP 1 Score: 141.7 bits (356), Expect = 2.0e-30
Identity = 65/119 (54.62%), Postives = 91/119 (76.47%), Query Frame = 0
Query: 6 ETSNPSDSSVQPTSRSIIDQYDNPYFLHHSDSTNLVIVSDPLTESNYASWNGAMILGLTM 65
++ NP+ P + +++Q+ NPYFLHHSD+T+LV+VSD LT+ NY SW+ ++++ LT+
Sbjct: 5 DSLNPTAPGFIPMNPIVVEQHANPYFLHHSDNTSLVLVSDLLTDENYTSWSRSIVIALTV 64
Query: 66 KNKLGFVDGSLTQPIGDLKKSWIICNAVVTVWISNSISKEISASFNITDSAHEIWLDLQ 125
KNK+GFVDGS+++P SWIICN VV WI NS+SK+ISAS +DSAHEIWLDL+
Sbjct: 65 KNKIGFVDGSISRPTDGRLHSWIICNNVVISWIFNSLSKKISASVLFSDSAHEIWLDLK 123
BLAST of Lcy02g006740 vs. ExPASy TrEMBL
Match:
A0A6J1CMF8 (uncharacterized protein LOC111012468 OS=Momordica charantia OX=3673 GN=LOC111012468 PE=4 SV=1)
HSP 1 Score: 139.8 bits (351), Expect = 7.6e-30
Identity = 64/104 (61.54%), Postives = 83/104 (79.81%), Query Frame = 0
Query: 21 SIIDQYDNPYFLHHSDSTNLVIVSDPLTESNYASWNGAMILGLTMKNKLGFVDGSLTQPI 80
SI++ Y NPY+LHHSD+T+LV+VSD L E+NY SW+ +MI+ LT+KNK+GFVDGS+++P
Sbjct: 34 SILENYSNPYYLHHSDNTSLVLVSDLLNENNYTSWSRSMIIALTVKNKIGFVDGSISRPS 93
Query: 81 GDLKKSWIICNAVVTVWISNSISKEISASFNITDSAHEIWLDLQ 125
G SW ICN VV W+ NS+SKEISAS +DSA +IWLDLQ
Sbjct: 94 GAQINSWKICNNVVIAWLLNSLSKEISASVLFSDSARDIWLDLQ 137
BLAST of Lcy02g006740 vs. ExPASy TrEMBL
Match:
A0A6J1DKR8 (uncharacterized protein LOC111021831 OS=Momordica charantia OX=3673 GN=LOC111021831 PE=4 SV=1)
HSP 1 Score: 132.1 bits (331), Expect = 1.6e-27
Identity = 62/121 (51.24%), Postives = 93/121 (76.86%), Query Frame = 0
Query: 4 ITETSNPSDSSVQPTSRSIIDQYDNPYFLHHSDSTNLVIVSDPLTESNYASWNGAMILGL 63
+ ++S+P+ SS S S +D NPY+LHH+D+T LV+V+ PLTE NY+SW+ +M++ L
Sbjct: 20 LDDSSSPNSSS----SVSGVDSVLNPYYLHHTDNTELVLVTQPLTEENYSSWSRSMLIAL 79
Query: 64 TMKNKLGFVDGSLTQPIGDLKKSWIICNAVVTVWISNSISKEISASFNITDSAHEIWLDL 123
++KNKLGF+DGS+++PIG+L +WI N VV WI NS+SKEIS+S ++SA +IW+DL
Sbjct: 80 SIKNKLGFIDGSISRPIGELLPAWIHNNHVVIAWILNSVSKEISSSILFSESARDIWIDL 136
Query: 124 Q 125
+
Sbjct: 140 K 136
BLAST of Lcy02g006740 vs. ExPASy TrEMBL
Match:
A0A7J0FKC9 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein OS=Actinidia rufa OX=165716 GN=Acr_13g0000100 PE=4 SV=1)
HSP 1 Score: 125.2 bits (313), Expect = 1.9e-25
Identity = 66/122 (54.10%), Postives = 84/122 (68.85%), Query Frame = 0
Query: 6 ETSNPSDSSVQPTSRSIIDQYDNPYFLHHSDSTNLVIVSDPLTESNYASWNGAMILGLTM 65
E S S++S ++ D +PYFLHHSD LV+VS LT NYASWN AMI+ L++
Sbjct: 247 EESENSENSRSSINKLATDDPSSPYFLHHSDGPELVLVSQSLTGDNYASWNRAMIIALSV 306
Query: 66 KNKLGFVDGSLTQPIG---DLKKSWIICNAVVTVWISNSISKEISASFNITDSAHEIWLD 125
KNKLGF+DGS+T+P G +L SWI N VV WI NS+SKEISAS + SA+EIW+D
Sbjct: 307 KNKLGFIDGSITKPEGNDTNLLNSWIRNNNVVISWILNSVSKEISASIIFSASANEIWID 366
BLAST of Lcy02g006740 vs. NCBI nr
Match:
XP_038874906.1 (uncharacterized protein LOC120067409 [Benincasa hispida])
HSP 1 Score: 151.0 bits (380), Expect = 6.8e-33
Identity = 74/122 (60.66%), Postives = 94/122 (77.05%), Query Frame = 0
Query: 8 SNPSDSSVQ-----PTSRSIIDQYDNPYFLHHSDSTNLVIVSDPLTESNYASWNGAMILG 67
SN S SS Q P +S + QY YFLHHSDST+LV+VSD LT+SNY+SW+ +M L
Sbjct: 15 SNSSPSSNQFTTYAPLVQSFVKQYSCSYFLHHSDSTSLVLVSDLLTKSNYSSWSQSMTLS 74
Query: 68 LTMKNKLGFVDGSLTQPIGDLKKSWIICNAVVTVWISNSISKEISASFNITDSAHEIWLD 125
T+KNK+GF+DG+L +PIGDL+ SWIICN+VVT WI N++SK+I+AS N +DS EIWLD
Sbjct: 75 FTVKNKMGFIDGTLPKPIGDLQNSWIICNSVVTTWIFNALSKKIAASVNFSDSTREIWLD 134
BLAST of Lcy02g006740 vs. NCBI nr
Match:
XP_022152756.1 (uncharacterized protein LOC111020399 [Momordica charantia])
HSP 1 Score: 150.6 bits (379), Expect = 8.9e-33
Identity = 69/102 (67.65%), Postives = 84/102 (82.35%), Query Frame = 0
Query: 23 IDQYDNPYFLHHSDSTNLVIVSDPLTESNYASWNGAMILGLTMKNKLGFVDGSLTQPIGD 82
I+QY NPYFLHHSD+T+LV+VSDPLT NY SW+ +M++ LT+KNK+GFVDGS+ +P GD
Sbjct: 21 IEQYTNPYFLHHSDNTSLVLVSDPLTNENYTSWSRSMLIALTVKNKVGFVDGSIVRPTGD 80
Query: 83 LKKSWIICNAVVTVWISNSISKEISASFNITDSAHEIWLDLQ 125
L SWIICN VV WI NS+SKEISAS +DSA EIWLDL+
Sbjct: 81 LLHSWIICNNVVISWILNSLSKEISASILFSDSAREIWLDLK 122
BLAST of Lcy02g006740 vs. NCBI nr
Match:
XP_038902375.1 (uncharacterized protein LOC120089012 [Benincasa hispida])
HSP 1 Score: 148.3 bits (373), Expect = 4.4e-32
Identity = 73/125 (58.40%), Postives = 93/125 (74.40%), Query Frame = 0
Query: 3 DITETSNPSDSSVQPT---SRSIIDQYDNPYFLHHSDSTNLVIVSDPLTESNYASWNGAM 62
+I TS+ D S P+ + ++++QY N YFLHHSDSTNLVIVS+ LTE+NY SW+ M
Sbjct: 14 NIPTTSSTFDLSFPPSMSLNPTVLEQYTNSYFLHHSDSTNLVIVSNLLTETNYTSWSQVM 73
Query: 63 ILGLTMKNKLGFVDGSLTQPIGDLKKSWIICNAVVTVWISNSISKEISASFNITDSAHEI 122
++GL +KNKLGFVDGS+ + GDL SWIIC+ VVT WI NS+ KEIS S N DSA +I
Sbjct: 74 VIGLIVKNKLGFVDGSIPRSTGDLLSSWIICDGVVTAWILNSLPKEISISINFADSARKI 133
Query: 123 WLDLQ 125
W+DLQ
Sbjct: 134 WVDLQ 138
BLAST of Lcy02g006740 vs. NCBI nr
Match:
XP_038887186.1 (uncharacterized protein LOC120077373 [Benincasa hispida])
HSP 1 Score: 143.3 bits (360), Expect = 1.4e-30
Identity = 72/123 (58.54%), Postives = 92/123 (74.80%), Query Frame = 0
Query: 3 DITETSNP-SDSSVQPTSRSIIDQYDNPYFLHHSDSTNLVIVSDPLTESNYASWNGAMIL 62
D T + N S +V+ + S ++QY NPYFLH SDST+LV+VS+ LTESNY SW+ AM +
Sbjct: 6 DPTSSGNSNSMENVRASLSSFLEQYQNPYFLHPSDSTSLVLVSNLLTESNYDSWSQAMKI 65
Query: 63 GLTMKNKLGFVDGSLTQPIGDLKKSWIICNAVVTVWISNSISKEISASFNITDSAHEIWL 122
GLT+KNKLGF++G + +P G+L SWII N +VT WI NS+SKEI AS N +DSA EIW
Sbjct: 66 GLTVKNKLGFINGEIPRPSGELLSSWIIYNGIVTTWILNSLSKEIFASINFSDSAQEIWA 125
Query: 123 DLQ 125
DLQ
Sbjct: 126 DLQ 128
BLAST of Lcy02g006740 vs. NCBI nr
Match:
XP_022154919.1 (uncharacterized protein LOC111022065 [Momordica charantia])
HSP 1 Score: 141.7 bits (356), Expect = 4.1e-30
Identity = 65/119 (54.62%), Postives = 91/119 (76.47%), Query Frame = 0
Query: 6 ETSNPSDSSVQPTSRSIIDQYDNPYFLHHSDSTNLVIVSDPLTESNYASWNGAMILGLTM 65
++ NP+ P + +++Q+ NPYFLHHSD+T+LV+VSD LT+ NY SW+ ++++ LT+
Sbjct: 5 DSLNPTAPGFIPMNPIVVEQHANPYFLHHSDNTSLVLVSDLLTDENYTSWSRSIVIALTV 64
Query: 66 KNKLGFVDGSLTQPIGDLKKSWIICNAVVTVWISNSISKEISASFNITDSAHEIWLDLQ 125
KNK+GFVDGS+++P SWIICN VV WI NS+SK+ISAS +DSAHEIWLDL+
Sbjct: 65 KNKIGFVDGSISRPTDGRLHSWIICNNVVISWIFNSLSKKISASVLFSDSAHEIWLDLK 123
BLAST of Lcy02g006740 vs. TAIR 10
Match:
AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 63.9 bits (154), Expect = 1.0e-10
Identity = 39/117 (33.33%), Postives = 61/117 (52.14%), Query Frame = 0
Query: 14 SVQPTSRSIIDQYDNPYFL----HHSDSTNLVIVSDPLTESNYASWNGAMILGLTMKNKL 73
SV PTS D+PY+L HH ++ +S E NY +W L + K
Sbjct: 7 SVSPTS-----DPDSPYYLPPDIHHPSDFSIQKLSK--DEDNYVAWKIRFRSFLRVTKKF 66
Query: 74 GFVDGSLTQ--PIGDLKKSWIICNAVVTVWISNSISKEISASFNITDSAHEIWLDLQ 125
GF+DG+L + P L + W CNA+V W+ NS++ ++ S ++AH++W DL+
Sbjct: 67 GFIDGTLPKPDPFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLR 116
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DIP8 | 4.3e-33 | 67.65 | uncharacterized protein LOC111020399 OS=Momordica charantia OX=3673 GN=LOC111020... | [more] |
A0A6J1DNP7 | 2.0e-30 | 54.62 | uncharacterized protein LOC111022065 OS=Momordica charantia OX=3673 GN=LOC111022... | [more] |
A0A6J1CMF8 | 7.6e-30 | 61.54 | uncharacterized protein LOC111012468 OS=Momordica charantia OX=3673 GN=LOC111012... | [more] |
A0A6J1DKR8 | 1.6e-27 | 51.24 | uncharacterized protein LOC111021831 OS=Momordica charantia OX=3673 GN=LOC111021... | [more] |
A0A7J0FKC9 | 1.9e-25 | 54.10 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein OS=Actinidia rufa... | [more] |
Match Name | E-value | Identity | Description | |
AT1G21280.1 | 1.0e-10 | 33.33 | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Ha... | [more] |