Lcy02g006740.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy02g006740.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Retrotran_gag_3 domain-containing protein
Location	Chr02: 9057831 .. 9058205 (-)
Sequence length	375
RNA-Seq Expression	Lcy02g006740.1
Synteny	Lcy02g006740.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGATATCACAGAAACCTCAAATCCTTCCGATTCTTCTGTTCAACCTACAAGTCGATCCATTATTGATCAGTATGATAATCCATATTTTCTACATCATTCCGATAGCACAAATTTGGTTATTGTCTCTGATCCTTTGACCGAATCAAATTATGCCTCATGGAATGGTGCTATGATTCTTGGACTCACCATGAAGAACAAGTTAGGGTTTGTTGATGGTTCTCTTACTCAGCCAATAGGAGATTTGAAAAAGTCGTGGATTATCTGCAACGCGGTTGTCACCGTTTGGATCTCGAACTCTATCTCAAAAGAAATTTCTGCGAGCTTCAATATTACTGATTCTGCGCACGAAATATGGCTCGATCTGCAATAG

mRNA sequence

ATGGTTGATATCACAGAAACCTCAAATCCTTCCGATTCTTCTGTTCAACCTACAAGTCGATCCATTATTGATCAGTATGATAATCCATATTTTCTACATCATTCCGATAGCACAAATTTGGTTATTGTCTCTGATCCTTTGACCGAATCAAATTATGCCTCATGGAATGGTGCTATGATTCTTGGACTCACCATGAAGAACAAGTTAGGGTTTGTTGATGGTTCTCTTACTCAGCCAATAGGAGATTTGAAAAAGTCGTGGATTATCTGCAACGCGGTTGTCACCGTTTGGATCTCGAACTCTATCTCAAAAGAAATTTCTGCGAGCTTCAATATTACTGATTCTGCGCACGAAATATGGCTCGATCTGCAATAG

Coding sequence (CDS)

ATGGTTGATATCACAGAAACCTCAAATCCTTCCGATTCTTCTGTTCAACCTACAAGTCGATCCATTATTGATCAGTATGATAATCCATATTTTCTACATCATTCCGATAGCACAAATTTGGTTATTGTCTCTGATCCTTTGACCGAATCAAATTATGCCTCATGGAATGGTGCTATGATTCTTGGACTCACCATGAAGAACAAGTTAGGGTTTGTTGATGGTTCTCTTACTCAGCCAATAGGAGATTTGAAAAAGTCGTGGATTATCTGCAACGCGGTTGTCACCGTTTGGATCTCGAACTCTATCTCAAAAGAAATTTCTGCGAGCTTCAATATTACTGATTCTGCGCACGAAATATGGCTCGATCTGCAATAG

Protein sequence

MVDITETSNPSDSSVQPTSRSIIDQYDNPYFLHHSDSTNLVIVSDPLTESNYASWNGAMILGLTMKNKLGFVDGSLTQPIGDLKKSWIICNAVVTVWISNSISKEISASFNITDSAHEIWLDLQ

Homology

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BLAST of Lcy02g006740.1 vs. ExPASy TrEMBL
Match: A0A6J1DIP8 (uncharacterized protein LOC111020399 OS=Momordica charantia OX=3673 GN=LOC111020399 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 4.3e-33
Identity = 69/102 (67.65%), Postives = 84/102 (82.35%), Query Frame = 0


Query: 23  IDQYDNPYFLHHSDSTNLVIVSDPLTESNYASWNGAMILGLTMKNKLGFVDGSLTQPIGD 82
           I+QY NPYFLHHSD+T+LV+VSDPLT  NY SW+ +M++ LT+KNK+GFVDGS+ +P GD
Sbjct: 21  IEQYTNPYFLHHSDNTSLVLVSDPLTNENYTSWSRSMLIALTVKNKVGFVDGSIVRPTGD 80

Query: 83  LKKSWIICNAVVTVWISNSISKEISASFNITDSAHEIWLDLQ 125
           L  SWIICN VV  WI NS+SKEISAS   +DSA EIWLDL+
Sbjct: 81  LLHSWIICNNVVISWILNSLSKEISASILFSDSAREIWLDLK 122

[Close]

BLAST of Lcy02g006740.1 vs. ExPASy TrEMBL
Match: A0A6J1DNP7 (uncharacterized protein LOC111022065 OS=Momordica charantia OX=3673 GN=LOC111022065 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.0e-30
Identity = 65/119 (54.62%), Postives = 91/119 (76.47%), Query Frame = 0


Query: 6   ETSNPSDSSVQPTSRSIIDQYDNPYFLHHSDSTNLVIVSDPLTESNYASWNGAMILGLTM 65
           ++ NP+     P +  +++Q+ NPYFLHHSD+T+LV+VSD LT+ NY SW+ ++++ LT+
Sbjct: 5   DSLNPTAPGFIPMNPIVVEQHANPYFLHHSDNTSLVLVSDLLTDENYTSWSRSIVIALTV 64

Query: 66  KNKLGFVDGSLTQPIGDLKKSWIICNAVVTVWISNSISKEISASFNITDSAHEIWLDLQ 125
           KNK+GFVDGS+++P      SWIICN VV  WI NS+SK+ISAS   +DSAHEIWLDL+
Sbjct: 65  KNKIGFVDGSISRPTDGRLHSWIICNNVVISWIFNSLSKKISASVLFSDSAHEIWLDLK 123

[Close]

BLAST of Lcy02g006740.1 vs. ExPASy TrEMBL
Match: A0A6J1CMF8 (uncharacterized protein LOC111012468 OS=Momordica charantia OX=3673 GN=LOC111012468 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 7.6e-30
Identity = 64/104 (61.54%), Postives = 83/104 (79.81%), Query Frame = 0


Query: 21  SIIDQYDNPYFLHHSDSTNLVIVSDPLTESNYASWNGAMILGLTMKNKLGFVDGSLTQPI 80
           SI++ Y NPY+LHHSD+T+LV+VSD L E+NY SW+ +MI+ LT+KNK+GFVDGS+++P 
Sbjct: 34  SILENYSNPYYLHHSDNTSLVLVSDLLNENNYTSWSRSMIIALTVKNKIGFVDGSISRPS 93

Query: 81  GDLKKSWIICNAVVTVWISNSISKEISASFNITDSAHEIWLDLQ 125
           G    SW ICN VV  W+ NS+SKEISAS   +DSA +IWLDLQ
Sbjct: 94  GAQINSWKICNNVVIAWLLNSLSKEISASVLFSDSARDIWLDLQ 137

[Close]

BLAST of Lcy02g006740.1 vs. ExPASy TrEMBL
Match: A0A6J1DKR8 (uncharacterized protein LOC111021831 OS=Momordica charantia OX=3673 GN=LOC111021831 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.6e-27
Identity = 62/121 (51.24%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 4   ITETSNPSDSSVQPTSRSIIDQYDNPYFLHHSDSTNLVIVSDPLTESNYASWNGAMILGL 63
           + ++S+P+ SS    S S +D   NPY+LHH+D+T LV+V+ PLTE NY+SW+ +M++ L
Sbjct: 20  LDDSSSPNSSS----SVSGVDSVLNPYYLHHTDNTELVLVTQPLTEENYSSWSRSMLIAL 79

Query: 64  TMKNKLGFVDGSLTQPIGDLKKSWIICNAVVTVWISNSISKEISASFNITDSAHEIWLDL 123
           ++KNKLGF+DGS+++PIG+L  +WI  N VV  WI NS+SKEIS+S   ++SA +IW+DL
Sbjct: 80  SIKNKLGFIDGSISRPIGELLPAWIHNNHVVIAWILNSVSKEISSSILFSESARDIWIDL 136

Query: 124 Q 125
           +
Sbjct: 140 K 136

[Close]

BLAST of Lcy02g006740.1 vs. ExPASy TrEMBL
Match: A0A7J0FKC9 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein OS=Actinidia rufa OX=165716 GN=Acr_13g0000100 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.9e-25
Identity = 66/122 (54.10%), Postives = 84/122 (68.85%), Query Frame = 0


Query: 6   ETSNPSDSSVQPTSRSIIDQYDNPYFLHHSDSTNLVIVSDPLTESNYASWNGAMILGLTM 65
           E S  S++S    ++   D   +PYFLHHSD   LV+VS  LT  NYASWN AMI+ L++
Sbjct: 247 EESENSENSRSSINKLATDDPSSPYFLHHSDGPELVLVSQSLTGDNYASWNRAMIIALSV 306

Query: 66  KNKLGFVDGSLTQPIG---DLKKSWIICNAVVTVWISNSISKEISASFNITDSAHEIWLD 125
           KNKLGF+DGS+T+P G   +L  SWI  N VV  WI NS+SKEISAS   + SA+EIW+D
Sbjct: 307 KNKLGFIDGSITKPEGNDTNLLNSWIRNNNVVISWILNSVSKEISASIIFSASANEIWID 366

[Close]

BLAST of Lcy02g006740.1 vs. NCBI nr
Match: XP_038874906.1 (uncharacterized protein LOC120067409 [Benincasa hispida])

HSP 1 Score: 151.0 bits (380), Expect = 6.8e-33
Identity = 74/122 (60.66%), Postives = 94/122 (77.05%), Query Frame = 0


Query: 8   SNPSDSSVQ-----PTSRSIIDQYDNPYFLHHSDSTNLVIVSDPLTESNYASWNGAMILG 67
           SN S SS Q     P  +S + QY   YFLHHSDST+LV+VSD LT+SNY+SW+ +M L 
Sbjct: 15  SNSSPSSNQFTTYAPLVQSFVKQYSCSYFLHHSDSTSLVLVSDLLTKSNYSSWSQSMTLS 74

Query: 68  LTMKNKLGFVDGSLTQPIGDLKKSWIICNAVVTVWISNSISKEISASFNITDSAHEIWLD 125
            T+KNK+GF+DG+L +PIGDL+ SWIICN+VVT WI N++SK+I+AS N +DS  EIWLD
Sbjct: 75  FTVKNKMGFIDGTLPKPIGDLQNSWIICNSVVTTWIFNALSKKIAASVNFSDSTREIWLD 134

[Close]

BLAST of Lcy02g006740.1 vs. NCBI nr
Match: XP_022152756.1 (uncharacterized protein LOC111020399 [Momordica charantia])

HSP 1 Score: 150.6 bits (379), Expect = 8.9e-33
Identity = 69/102 (67.65%), Postives = 84/102 (82.35%), Query Frame = 0


Query: 23  IDQYDNPYFLHHSDSTNLVIVSDPLTESNYASWNGAMILGLTMKNKLGFVDGSLTQPIGD 82
           I+QY NPYFLHHSD+T+LV+VSDPLT  NY SW+ +M++ LT+KNK+GFVDGS+ +P GD
Sbjct: 21  IEQYTNPYFLHHSDNTSLVLVSDPLTNENYTSWSRSMLIALTVKNKVGFVDGSIVRPTGD 80

Query: 83  LKKSWIICNAVVTVWISNSISKEISASFNITDSAHEIWLDLQ 125
           L  SWIICN VV  WI NS+SKEISAS   +DSA EIWLDL+
Sbjct: 81  LLHSWIICNNVVISWILNSLSKEISASILFSDSAREIWLDLK 122

[Close]

BLAST of Lcy02g006740.1 vs. NCBI nr
Match: XP_038902375.1 (uncharacterized protein LOC120089012 [Benincasa hispida])

HSP 1 Score: 148.3 bits (373), Expect = 4.4e-32
Identity = 73/125 (58.40%), Postives = 93/125 (74.40%), Query Frame = 0


Query: 3   DITETSNPSDSSVQPT---SRSIIDQYDNPYFLHHSDSTNLVIVSDPLTESNYASWNGAM 62
           +I  TS+  D S  P+   + ++++QY N YFLHHSDSTNLVIVS+ LTE+NY SW+  M
Sbjct: 14  NIPTTSSTFDLSFPPSMSLNPTVLEQYTNSYFLHHSDSTNLVIVSNLLTETNYTSWSQVM 73

Query: 63  ILGLTMKNKLGFVDGSLTQPIGDLKKSWIICNAVVTVWISNSISKEISASFNITDSAHEI 122
           ++GL +KNKLGFVDGS+ +  GDL  SWIIC+ VVT WI NS+ KEIS S N  DSA +I
Sbjct: 74  VIGLIVKNKLGFVDGSIPRSTGDLLSSWIICDGVVTAWILNSLPKEISISINFADSARKI 133

Query: 123 WLDLQ 125
           W+DLQ
Sbjct: 134 WVDLQ 138

[Close]

BLAST of Lcy02g006740.1 vs. NCBI nr
Match: XP_038887186.1 (uncharacterized protein LOC120077373 [Benincasa hispida])

HSP 1 Score: 143.3 bits (360), Expect = 1.4e-30
Identity = 72/123 (58.54%), Postives = 92/123 (74.80%), Query Frame = 0


Query: 3   DITETSNP-SDSSVQPTSRSIIDQYDNPYFLHHSDSTNLVIVSDPLTESNYASWNGAMIL 62
           D T + N  S  +V+ +  S ++QY NPYFLH SDST+LV+VS+ LTESNY SW+ AM +
Sbjct: 6   DPTSSGNSNSMENVRASLSSFLEQYQNPYFLHPSDSTSLVLVSNLLTESNYDSWSQAMKI 65

Query: 63  GLTMKNKLGFVDGSLTQPIGDLKKSWIICNAVVTVWISNSISKEISASFNITDSAHEIWL 122
           GLT+KNKLGF++G + +P G+L  SWII N +VT WI NS+SKEI AS N +DSA EIW 
Sbjct: 66  GLTVKNKLGFINGEIPRPSGELLSSWIIYNGIVTTWILNSLSKEIFASINFSDSAQEIWA 125

Query: 123 DLQ 125
           DLQ
Sbjct: 126 DLQ 128

[Close]

BLAST of Lcy02g006740.1 vs. NCBI nr
Match: XP_022154919.1 (uncharacterized protein LOC111022065 [Momordica charantia])

HSP 1 Score: 141.7 bits (356), Expect = 4.1e-30
Identity = 65/119 (54.62%), Postives = 91/119 (76.47%), Query Frame = 0


Query: 6   ETSNPSDSSVQPTSRSIIDQYDNPYFLHHSDSTNLVIVSDPLTESNYASWNGAMILGLTM 65
           ++ NP+     P +  +++Q+ NPYFLHHSD+T+LV+VSD LT+ NY SW+ ++++ LT+
Sbjct: 5   DSLNPTAPGFIPMNPIVVEQHANPYFLHHSDNTSLVLVSDLLTDENYTSWSRSIVIALTV 64

Query: 66  KNKLGFVDGSLTQPIGDLKKSWIICNAVVTVWISNSISKEISASFNITDSAHEIWLDLQ 125
           KNK+GFVDGS+++P      SWIICN VV  WI NS+SK+ISAS   +DSAHEIWLDL+
Sbjct: 65  KNKIGFVDGSISRPTDGRLHSWIICNNVVISWIFNSLSKKISASVLFSDSAHEIWLDLK 123

[Close]

BLAST of Lcy02g006740.1 vs. TAIR 10
Match: AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-10
Identity = 39/117 (33.33%), Postives = 61/117 (52.14%), Query Frame = 0


Query: 14  SVQPTSRSIIDQYDNPYFL----HHSDSTNLVIVSDPLTESNYASWNGAMILGLTMKNKL 73
           SV PTS       D+PY+L    HH    ++  +S    E NY +W       L +  K 
Sbjct: 7   SVSPTS-----DPDSPYYLPPDIHHPSDFSIQKLSK--DEDNYVAWKIRFRSFLRVTKKF 66

Query: 74  GFVDGSLTQ--PIGDLKKSWIICNAVVTVWISNSISKEISASFNITDSAHEIWLDLQ 125
           GF+DG+L +  P   L + W  CNA+V  W+ NS++ ++  S    ++AH++W DL+
Sbjct: 67  GFIDGTLPKPDPFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLR 116

The following BLAST results are available for this feature:

BLAST of Lcy02g006740.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy02g006740.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DIP8	4.3e-33	67.65	uncharacterized protein LOC111020399 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1DNP7	2.0e-30	54.62	uncharacterized protein LOC111022065 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1CMF8	7.6e-30	61.54	uncharacterized protein LOC111012468 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A6J1DKR8	1.6e-27	51.24	uncharacterized protein LOC111021831 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A7J0FKC9	1.9e-25	54.10	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein OS=Actinidia rufa...	[more]

BLAST of Lcy02g006740.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038874906.1	6.8e-33	60.66	uncharacterized protein LOC120067409 [Benincasa hispida]	[more]
XP_022152756.1	8.9e-33	67.65	uncharacterized protein LOC111020399 [Momordica charantia]	[more]
XP_038902375.1	4.4e-32	58.40	uncharacterized protein LOC120089012 [Benincasa hispida]	[more]
XP_038887186.1	1.4e-30	58.54	uncharacterized protein LOC120077373 [Benincasa hispida]	[more]
XP_022154919.1	4.1e-30	54.62	uncharacterized protein LOC111022065 [Momordica charantia]	[more]

BLAST of Lcy02g006740.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21280.1	1.0e-10	33.33	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Ha...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029472	Retrotransposon Copia-like, N-terminal	PFAM	PF14244	Retrotran_gag_3	coord: 33..79 e-value: 3.6E-16 score: 58.7
None	No IPR available	PANTHER	PTHR37610:SF53	SUBFAMILY NOT NAMED	coord: 23..124
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 23..124

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy02g006740	Lcy02g006740	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy02g006740.1.exon1	Lcy02g006740.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy02g006740.1.cds1	Lcy02g006740.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy02g006740.1	Lcy02g006740.1-protein	polypeptide