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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGTCCACTTCGGAGTCGAAACTCCAAGACGCAGAATCAAACGCCGCCGCCACCGCTAAAACCCTGGAGGATCAACAACAATCGGGTTCCCCAATTCACTCTGAGGAAAAATCTTCTGAGGAATCAGGCCAATCAGGAAAGGTTCCCGAGAATGGAGGTGAAGATGAAGGAGGAGAGGATCTAGAAGAGGAAGAAGAGGGGGAGTGTGGATTTTGCTTGTTTATGAAAGGGGGTGGTTGCAGAGATAGCTTCATCAATTGGGAGAAGTGCATCGAGGAGGCGGAGAAGAACAAGGAGGATATTGTGGAGAAGTGCTTTGAAGTGACGGGGGCTCTGAAGAAGTGTATGGAGGCTCATGCGGATTATTACGAGCCGATTCTAAAGGCGGAGAAACTGGCAGAGGAGGAGGCGATTATCGAATTGGAGAAGGAAATAACTCCGAGCGCTACGCAACAAAATACGAACTCCAAAGACCTGGATGCTGGTGGTAAGTGAAGTTGGTTGCTGCTCGTTGGATCTGATTCATGAGGCGGGAAGCATTGTTTTGTTGAGAGTATTTTAGTTTCTAATCGATCTTTTAACAGGCTGTGGAGGATATCCTCCTCGAACTCTTTGTCATAGTGCACCGAAAGCTGATCATATTAATTTCAGAGTATCATAG mRNA sequence ATGTCCACTTCGGAGTCGAAACTCCAAGACGCAGAATCAAACGCCGCCGCCACCGCTAAAACCCTGGAGGATCAACAACAATCGGGTTCCCCAATTCACTCTGAGGAAAAATCTTCTGAGGAATCAGGCCAATCAGGAAAGGTTCCCGAGAATGGAGGTGAAGATGAAGGAGGAGAGGATCTAGAAGAGGAAGAAGAGGGGGAGTGTGGATTTTGCTTGTTTATGAAAGGGGGTGGTTGCAGAGATAGCTTCATCAATTGGGAGAAGTGCATCGAGGAGGCGGAGAAGAACAAGGAGGATATTGTGGAGAAGTGCTTTGAAGTGACGGGGGCTCTGAAGAAGTGTATGGAGGCTCATGCGGATTATTACGAGCCGATTCTAAAGGCGGAGAAACTGGCAGAGGAGGAGGCGATTATCGAATTGGAGAAGGAAATAACTCCGAGCGCTACGCAACAAAATACGAACTCCAAAGACCTGGATGCTGGTGGCTGTGGAGGATATCCTCCTCGAACTCTTTGTCATAGTGCACCGAAAGCTGATCATATTAATTTCAGAGTATCATAG Coding sequence (CDS) ATGTCCACTTCGGAGTCGAAACTCCAAGACGCAGAATCAAACGCCGCCGCCACCGCTAAAACCCTGGAGGATCAACAACAATCGGGTTCCCCAATTCACTCTGAGGAAAAATCTTCTGAGGAATCAGGCCAATCAGGAAAGGTTCCCGAGAATGGAGGTGAAGATGAAGGAGGAGAGGATCTAGAAGAGGAAGAAGAGGGGGAGTGTGGATTTTGCTTGTTTATGAAAGGGGGTGGTTGCAGAGATAGCTTCATCAATTGGGAGAAGTGCATCGAGGAGGCGGAGAAGAACAAGGAGGATATTGTGGAGAAGTGCTTTGAAGTGACGGGGGCTCTGAAGAAGTGTATGGAGGCTCATGCGGATTATTACGAGCCGATTCTAAAGGCGGAGAAACTGGCAGAGGAGGAGGCGATTATCGAATTGGAGAAGGAAATAACTCCGAGCGCTACGCAACAAAATACGAACTCCAAAGACCTGGATGCTGGTGGCTGTGGAGGATATCCTCCTCGAACTCTTTGTCATAGTGCACCGAAAGCTGATCATATTAATTTCAGAGTATCATAG Protein sequence MSTSESKLQDAESNAAATAKTLEDQQQSGSPIHSEEKSSEESGQSGKVPENGGEDEGGEDLEEEEEGECGFCLFMKGGGCRDSFINWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHADYYEPILKAEKLAEEEAIIELEKEITPSATQQNTNSKDLDAGGCGGYPPRTLCHSAPKADHINFRVS
Homology
BLAST of Lag0040137 vs. NCBI nr
Match: XP_023536143.1 (uncharacterized protein LOC111797387 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 265.0 bits (676), Expect = 4.9e-67 Identity = 138/160 (86.25%), Postives = 148/160 (92.50%), Query Frame = 0 Query: 1 MSTSESKLQDAESNAAATAKTLEDQQQSGSPIHSEEKSSEESGQSGKVPENGGEDEGGED 60 MSTSESKLQDAESNAAA KT EDQQQ G+P HSEEKS EESGQSGK+ +GGEDEGGED Sbjct: 1 MSTSESKLQDAESNAAAATKTPEDQQQLGAPNHSEEKSPEESGQSGKISGSGGEDEGGED 60
Query: 61 LEEEEEGECGFCLFMKGGGCRDSFINWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHA 120 L+EEEEGECGFCLFMKGGGCRDSF+ WEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHA Sbjct: 61 LDEEEEGECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHA 120
Query: 121 DYYEPILKAEKLAEEEAIIELEKEITPSATQQNTNSKDLD 161 DYYEPILKAEK+AE EAIIELEKE TP+ATQQ+T+S DL+ Sbjct: 121 DYYEPILKAEKMAENEAIIELEKESTPNATQQHTDSIDLE 160
BLAST of Lag0040137 vs. NCBI nr
Match: XP_038893081.1 (uncharacterized protein LOC120081968 [Benincasa hispida]) HSP 1 Score: 264.2 bits (674), Expect = 8.3e-67 Identity = 141/160 (88.12%), Postives = 149/160 (93.12%), Query Frame = 0 Query: 1 MSTSESKLQDAESNAAATAKTLEDQQQSGSPIHSEEKSSEESGQSGKVPENGGEDEGGED 60 MSTSESKLQDAES AAAT KTLEDQ QSGS SEEK SEES QSG++PE+GG DE GED Sbjct: 1 MSTSESKLQDAESKAAAT-KTLEDQPQSGSSNRSEEKYSEESAQSGRIPESGGGDEEGED 60
Query: 61 LEEEEEGECGFCLFMKGGGCRDSFINWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHA 120 LEEEEEGECGFCLFMKGGGC+DSFI WEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHA Sbjct: 61 LEEEEEGECGFCLFMKGGGCKDSFIEWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHA 120
Query: 121 DYYEPILKAEKLAEEEAIIELEKEITPSATQQNTNSKDLD 161 DYYEPILKAEK+AEEEAIIELEKEITP+ATQQN+NSKDL+ Sbjct: 121 DYYEPILKAEKMAEEEAIIELEKEITPNATQQNSNSKDLE 159
BLAST of Lag0040137 vs. NCBI nr
Match: XP_022997117.1 (uncharacterized protein LOC111492108 [Cucurbita maxima]) HSP 1 Score: 263.1 bits (671), Expect = 1.9e-66 Identity = 139/161 (86.34%), Postives = 150/161 (93.17%), Query Frame = 0 Query: 1 MSTSESKLQDAESN-AAATAKTLEDQQQSGSPIHSEEKSSEESGQSGKVPENGGEDEGGE 60 MSTSESKLQDAESN AAA AKT EDQQQ G+P HSEEKS +ES QSGK+ E+GGEDEGGE Sbjct: 1 MSTSESKLQDAESNAAAAAAKTPEDQQQLGAPNHSEEKSPQESVQSGKISESGGEDEGGE 60
Query: 61 DLEEEEEGECGFCLFMKGGGCRDSFINWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAH 120 DL+EEEEGECGFCLFMKGGGCRDSF+ WEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAH Sbjct: 61 DLDEEEEGECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAH 120
Query: 121 ADYYEPILKAEKLAEEEAIIELEKEITPSATQQNTNSKDLD 161 ADYYEPILKAEK+AE EAIIELEKE TP+ATQQ+T+SKDL+ Sbjct: 121 ADYYEPILKAEKMAENEAIIELEKESTPNATQQHTDSKDLE 161
BLAST of Lag0040137 vs. NCBI nr
Match: KAG7032232.1 (hypothetical protein SDJN02_06275, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 262.3 bits (669), Expect = 3.2e-66 Identity = 136/160 (85.00%), Postives = 148/160 (92.50%), Query Frame = 0 Query: 1 MSTSESKLQDAESNAAATAKTLEDQQQSGSPIHSEEKSSEESGQSGKVPENGGEDEGGED 60 MSTS SK QDAESNAAA AK+ EDQQQ G+P HSEEKS EESGQSGK+ E+GGEDEGGED Sbjct: 1 MSTSGSKRQDAESNAAAAAKSPEDQQQLGAPNHSEEKSPEESGQSGKISESGGEDEGGED 60
Query: 61 LEEEEEGECGFCLFMKGGGCRDSFINWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHA 120 L+EEEEGECGFCLFMKGGGCRDSF+ WEKCIEEAEKNKEDIVEKCFE+TGALKKCMEAHA Sbjct: 61 LDEEEEGECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFEITGALKKCMEAHA 120
Query: 121 DYYEPILKAEKLAEEEAIIELEKEITPSATQQNTNSKDLD 161 DYYEPILKAEK+AE EAIIELEKE TP+ATQQ+T+S DL+ Sbjct: 121 DYYEPILKAEKMAENEAIIELEKESTPNATQQHTDSIDLE 160
BLAST of Lag0040137 vs. NCBI nr
Match: KAG6601449.1 (hypothetical protein SDJN03_06682, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 262.3 bits (669), Expect = 3.2e-66 Identity = 136/160 (85.00%), Postives = 148/160 (92.50%), Query Frame = 0 Query: 1 MSTSESKLQDAESNAAATAKTLEDQQQSGSPIHSEEKSSEESGQSGKVPENGGEDEGGED 60 MSTS SK QDAESNAAA AK+ EDQQQ G+P HSEEKS EESGQSGK+ E+GGEDEGGED Sbjct: 1 MSTSGSKRQDAESNAAAAAKSPEDQQQLGAPNHSEEKSPEESGQSGKISESGGEDEGGED 60
Query: 61 LEEEEEGECGFCLFMKGGGCRDSFINWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHA 120 L+EEEEGECGFCLFMKGGGCRDSF+ WEKCIEEAEKNKEDIVEKCFE+TGALKKCMEAHA Sbjct: 61 LDEEEEGECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFEITGALKKCMEAHA 120
Query: 121 DYYEPILKAEKLAEEEAIIELEKEITPSATQQNTNSKDLD 161 DYYEPILKAEK+AE EAIIELEKE TP+ATQQ+T+S DL+ Sbjct: 121 DYYEPILKAEKMAENEAIIELEKESTPNATQQHTDSIDLE 160
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_023536143.1 | 4.9e-67 | 86.25 | uncharacterized protein LOC111797387 [Cucurbita pepo subsp. pepo] | [more] |
XP_038893081.1 | 8.3e-67 | 88.13 | uncharacterized protein LOC120081968 [Benincasa hispida] | [more] |
XP_022997117.1 | 1.9e-66 | 86.34 | uncharacterized protein LOC111492108 [Cucurbita maxima] | [more] |
KAG7032232.1 | 3.2e-66 | 85.00 | hypothetical protein SDJN02_06275, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAG6601449.1 | 3.2e-66 | 85.00 | hypothetical protein SDJN03_06682, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | COILS | Coil | Coil | coord: 8..28 |
None | No IPR available | SMART | SM01227 | GCK_2 | coord: 67..141 e-value: 4.9E-40 score: 149.0 |
None | No IPR available | GENE3D | 1.10.287.2900 | | coord: 48..127 e-value: 3.3E-7 score: 32.3 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..65 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..33 |
None | No IPR available | PANTHER | PTHR34357 | F7A19.14 PROTEIN-RELATED | coord: 4..157 |
None | No IPR available | PANTHER | PTHR34357:SF2 | F7A19.14 PROTEIN-RELATED | coord: 4..157 |
IPR012891 | GCK | PFAM | PF07802 | GCK | coord: 67..137 e-value: 1.1E-35 score: 121.9 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006414 |
translational elongation |
molecular_function |
GO:0003746 |
translation elongation factor activity |
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