Lag0040137 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0040137
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionGCK domain-containing protein
Locationchr13: 2425705 .. 2426365 (+)
RNA-Seq ExpressionLag0040137
SyntenyLag0040137
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCACTTCGGAGTCGAAACTCCAAGACGCAGAATCAAACGCCGCCGCCACCGCTAAAACCCTGGAGGATCAACAACAATCGGGTTCCCCAATTCACTCTGAGGAAAAATCTTCTGAGGAATCAGGCCAATCAGGAAAGGTTCCCGAGAATGGAGGTGAAGATGAAGGAGGAGAGGATCTAGAAGAGGAAGAAGAGGGGGAGTGTGGATTTTGCTTGTTTATGAAAGGGGGTGGTTGCAGAGATAGCTTCATCAATTGGGAGAAGTGCATCGAGGAGGCGGAGAAGAACAAGGAGGATATTGTGGAGAAGTGCTTTGAAGTGACGGGGGCTCTGAAGAAGTGTATGGAGGCTCATGCGGATTATTACGAGCCGATTCTAAAGGCGGAGAAACTGGCAGAGGAGGAGGCGATTATCGAATTGGAGAAGGAAATAACTCCGAGCGCTACGCAACAAAATACGAACTCCAAAGACCTGGATGCTGGTGGTAAGTGAAGTTGGTTGCTGCTCGTTGGATCTGATTCATGAGGCGGGAAGCATTGTTTTGTTGAGAGTATTTTAGTTTCTAATCGATCTTTTAACAGGCTGTGGAGGATATCCTCCTCGAACTCTTTGTCATAGTGCACCGAAAGCTGATCATATTAATTTCAGAGTATCATAG

mRNA sequence

ATGTCCACTTCGGAGTCGAAACTCCAAGACGCAGAATCAAACGCCGCCGCCACCGCTAAAACCCTGGAGGATCAACAACAATCGGGTTCCCCAATTCACTCTGAGGAAAAATCTTCTGAGGAATCAGGCCAATCAGGAAAGGTTCCCGAGAATGGAGGTGAAGATGAAGGAGGAGAGGATCTAGAAGAGGAAGAAGAGGGGGAGTGTGGATTTTGCTTGTTTATGAAAGGGGGTGGTTGCAGAGATAGCTTCATCAATTGGGAGAAGTGCATCGAGGAGGCGGAGAAGAACAAGGAGGATATTGTGGAGAAGTGCTTTGAAGTGACGGGGGCTCTGAAGAAGTGTATGGAGGCTCATGCGGATTATTACGAGCCGATTCTAAAGGCGGAGAAACTGGCAGAGGAGGAGGCGATTATCGAATTGGAGAAGGAAATAACTCCGAGCGCTACGCAACAAAATACGAACTCCAAAGACCTGGATGCTGGTGGCTGTGGAGGATATCCTCCTCGAACTCTTTGTCATAGTGCACCGAAAGCTGATCATATTAATTTCAGAGTATCATAG

Coding sequence (CDS)

ATGTCCACTTCGGAGTCGAAACTCCAAGACGCAGAATCAAACGCCGCCGCCACCGCTAAAACCCTGGAGGATCAACAACAATCGGGTTCCCCAATTCACTCTGAGGAAAAATCTTCTGAGGAATCAGGCCAATCAGGAAAGGTTCCCGAGAATGGAGGTGAAGATGAAGGAGGAGAGGATCTAGAAGAGGAAGAAGAGGGGGAGTGTGGATTTTGCTTGTTTATGAAAGGGGGTGGTTGCAGAGATAGCTTCATCAATTGGGAGAAGTGCATCGAGGAGGCGGAGAAGAACAAGGAGGATATTGTGGAGAAGTGCTTTGAAGTGACGGGGGCTCTGAAGAAGTGTATGGAGGCTCATGCGGATTATTACGAGCCGATTCTAAAGGCGGAGAAACTGGCAGAGGAGGAGGCGATTATCGAATTGGAGAAGGAAATAACTCCGAGCGCTACGCAACAAAATACGAACTCCAAAGACCTGGATGCTGGTGGCTGTGGAGGATATCCTCCTCGAACTCTTTGTCATAGTGCACCGAAAGCTGATCATATTAATTTCAGAGTATCATAG

Protein sequence

MSTSESKLQDAESNAAATAKTLEDQQQSGSPIHSEEKSSEESGQSGKVPENGGEDEGGEDLEEEEEGECGFCLFMKGGGCRDSFINWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHADYYEPILKAEKLAEEEAIIELEKEITPSATQQNTNSKDLDAGGCGGYPPRTLCHSAPKADHINFRVS
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023536143.14.9e-6786.25uncharacterized protein LOC111797387 [Cucurbita pepo subsp. pepo][more]
XP_038893081.18.3e-6788.13uncharacterized protein LOC120081968 [Benincasa hispida][more]
XP_022997117.11.9e-6686.34uncharacterized protein LOC111492108 [Cucurbita maxima][more]
KAG7032232.13.2e-6685.00hypothetical protein SDJN02_06275, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6601449.13.2e-6685.00hypothetical protein SDJN03_06682, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 8..28
NoneNo IPR availableSMARTSM01227GCK_2coord: 67..141
e-value: 4.9E-40
score: 149.0
NoneNo IPR availableGENE3D1.10.287.2900coord: 48..127
e-value: 3.3E-7
score: 32.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..65
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33
NoneNo IPR availablePANTHERPTHR34357F7A19.14 PROTEIN-RELATEDcoord: 4..157
NoneNo IPR availablePANTHERPTHR34357:SF2F7A19.14 PROTEIN-RELATEDcoord: 4..157
IPR012891GCKPFAMPF07802GCKcoord: 67..137
e-value: 1.1E-35
score: 121.9

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0040137.1Lag0040137.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006414 translational elongation
molecular_function GO:0003746 translation elongation factor activity