Sequences
The following sequences are available for this feature:
Legend: polypeptide exon CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCTCGCCTCTCAAATGTCTAGTTGCGATAGTGGATCGAGCTCTAATCCTTCGAGTGAGAAAAGCTTATGGAGATTGGTGTGGAGGCTTGAATGCCAGTCTCGAGTTAAAGCTACTGTGTGGAGG ATCTAAGCGGGAAGATGGAGTGCATACATTTTGGAATTGCAAGGTGTCTAGAAGAATTTGGAATGTTTATATCCCTAAGCTTACTAAGGTGTTCTCACTGTGCAGGGAATGGTGGAGTTCTAG GAACCAGGGGAGTCACGTTTCTTGGGAGCCGTCGGTGACCGGGCATTGGAAGTTGAACACCAATGCTTCTTCGTTCGACGCAAAGAAAAGCGGGGGGCTGGGATGGACCATTCGTGACTCGACGGGTTCTTTGATTGGAGCCGACTGCGATCAAATTCAGAGATTTGGGGATATTAAGTGTATCGGAGCGGAAGCAATTCTCAAGGGAATGAATCATATTGCGGATCTTCTAAGGAAGGATAGGAATTTCATGCCTTACCCGTTAATCGTGGAGTCTGATTCCTTGGAGGTGATTAGTCTTCTTCAGTAG
ATGCTCTCGCCTCTCAAATGTCTAGTTGCGATAGTGGATCGAGCTCTAATCCTTCGAGTGAGAAAAGCTTATGGAGATTGGTGTGGAGGCTTGAATGCCAGTCTCGAGTTAAAGCTACTGTGTGGAGGATCTAAGCGGGAAGATGGAGTGCATACATTTTGGAATTGCAAGGTGTCTAGAAGAATTTGGAATGTTTATATCCCTAAGCTTACTAAGGTGTTCTCACTGTGCAGGGAATGGTGGAGTTCTAGGAACCAGGGGAGTCACGTTTCTTGGGAGCCGTCGGTGACCGGGCATTGGAAGTTGAACACCAATGCTTCTTCGTTCGACGCAAAGAAAAGCGGGGGGCTGGGATGGACCATTCGTGACTCGACGGGTTCTTTGATTGGAGCCGACTGCGATCAAATTCAGAGATTTGGGGATATTAAGTGTATCGGAGCGGAAGCAATTCTCAAGGGAATGAATCATATTGCGGATCTTCTAAGGAAGGATAGGAATTTCATGCCTTACCCGTTAATCGTGGAGTCTGATTCCTTGGAGGTGATTAGTCTTCTTCAGTAG
ATGCTCTCGCCTCTCAAATGTCTAGTTGCGATAGTGGATCGAGCTCTAATCCTTCGAGTGAGAAAAGCTTATGGAGATTGGTGTGGAGGCTTGAATGCCAGTCTCGAGTTAAAGCTACTGTGTGGAGGATCTAAGCGGGAAGATGGAGTGCATACATTTTGGAATTGCAAGGTGTCTAGAAGAATTTGGAATGTTTATATCCCTAAGCTTACTAAGGTGTTCTCACTGTGCAGGGAATGGTGGAGTTCTAGGAACCAGGGGAGTCACGTTTCTTGGGAGCCGTCGGTGACCGGGCATTGGAAGTTGAACACCAATGCTTCTTCGTTCGACGCAAAGAAAAGCGGGGGGCTGGGATGGACCATTCGTGACTCGACGGGTTCTTTGATTGGAGCCGACTGCGATCAAATTCAGAGATTTGGGGATATTAAGTGTATCGGAGCGGAAGCAATTCTCAAGGGAATGAATCATATTGCGGATCTTCTAAGGAAGGATAGGAATTTCATGCCTTACCCGTTAATCGTGGAGTCTGATTCCTTGGAGGTGATTAGTCTTCTTCAGTAG
MLSPLKCLVAIVDRALILRVRKAYGDWCGGLNASLELKLLCGGSKREDGVHTFWNCKVSRRIWNVYIPKLTKVFSLCREWWSSRNQGSHVSWEPSVTGHWKLNTNASSFDAKKSGGLGWTIRDSTGSLIGADCDQIQRFGDIKCIGAEAILKGMNHIADLLRKDRNFMPYPLIVESDSLEVISLLQ
Homology
BLAST of Lag0026630 vs. NCBI nr
Match:
XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])
HSP 1 Score: 62.8 bits (151), Expect = 3.7e-06
Identity = 36/95 (37.89%), Postives = 53/95 (55.79%), Query Frame = 0
BLAST of Lag0026630 vs. NCBI nr
Match:
XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])
HSP 1 Score: 62.4 bits (150), Expect = 4.8e-06
Identity = 37/94 (39.36%), Postives = 50/94 (53.19%), Query Frame = 0
BLAST of Lag0026630 vs. NCBI nr
Match:
XP_024041100.1 (uncharacterized protein LOC112098855 isoform X1 [Citrus clementina] >XP_024041101.1 uncharacterized protein LOC112098855 isoform X1 [Citrus clementina] >XP_024041102.1 uncharacterized protein LOC112098855 isoform X1 [Citrus clementina])
HSP 1 Score: 62.0 bits (149), Expect = 6.3e-06
Identity = 36/102 (35.29%), Postives = 56/102 (54.90%), Query Frame = 0
BLAST of Lag0026630 vs. NCBI nr
Match:
XP_024041104.1 (uncharacterized protein LOC112098855 isoform X3 [Citrus clementina])
HSP 1 Score: 62.0 bits (149), Expect = 6.3e-06
Identity = 36/102 (35.29%), Postives = 56/102 (54.90%), Query Frame = 0
BLAST of Lag0026630 vs. NCBI nr
Match:
XP_024041103.1 (uncharacterized protein LOC112098855 isoform X2 [Citrus clementina])
HSP 1 Score: 62.0 bits (149), Expect = 6.3e-06
Identity = 36/102 (35.29%), Postives = 56/102 (54.90%), Query Frame = 0
The following BLAST results are available for this feature:
Match Name E-value Identity Description
XP_022156777.1 3.7e-06 37.89 uncharacterized protein LOC111023608 [Momordica charantia] [more] XP_022143535.1 4.8e-06 39.36 uncharacterized protein LOC111013412 [Momordica charantia] [more] XP_024041100.1 6.3e-06 35.29 uncharacterized protein LOC112098855 isoform X1 [Citrus clementina] >XP_02404110... [more] XP_024041104.1 6.3e-06 35.29 uncharacterized protein LOC112098855 isoform X3 [Citrus clementina] [more] XP_024041103.1 6.3e-06 35.29 uncharacterized protein LOC112098855 isoform X2 [Citrus clementina] [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
A T G C T C T C G C C T C T C A A A T G T C T A G T T G C G A T A G T G G A T C G A G C T C T A A T C C T T C G A G T G A G A A A A G C T T A T G G A G A T T G G T G T G G A G G C T T G A A T G C C A G T C T C G A G T T A A A G C T A C T G T G T G G A G G A T C T A A G C G G G A A G A T G G A G T G C A T A C A T T T T G G A A T T G C A A G G T G T C T A G A A G A A T T T G G A A T G T T T A T A T C C C T A A G C T T A C T A A G G T G T T C T C A C T G T G C A G G G A A T G G T G G A G T T C T A G G A A C C A G G G G A G T C A C G T T T C T T G G G A G C C G T C G G T G A C C G G G C A T T G G A A G T T G A A C A C C A A T G C T T C T T C G T T C G A C G C A A A G A A A A G C G G G G G G C T G G G A T G G A C C A T T C G T G A C T C G A C G G G T T C T T T G A T T G G A G C C G A C T G C G A T C A A A T T C A G A G A T T T G G G G A T A T T A A G T G T A T C G G A G C G G A A G C A A T T C T C A A G G G A A T G A A T C A T A T T G C G G A T C T T C T A A G G A A G G A T A G G A A T T T C A T G C C T T A C C C G T T A A T C G T G G A G T C T G A T T C C T T G G A G G T G A T T A G T C T T C T T C A G T A G 50 100 150 200 250 300 350 400 450 500 550 Expect = 2.0E-5 / Score = 24.4 Sequence PF13456
IPR Term IPR Description Source Source Term Source Description Alignment
IPR002156 Ribonuclease H domain PFAM PF13456 RVT_3 coord: 109..185
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category
Term Accession
Term Name
molecular_function
GO:0003676 nucleic acid binding
molecular_function
GO:0004523 RNA-DNA hybrid ribonuclease activity
