Lag0026630.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0026630.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Location	chr10: 39842052 .. 39842900 (-)
Sequence length	561
RNA-Seq Expression	Lag0026630.1
Synteny	Lag0026630.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTCGCCTCTCAAATGTCTAGTTGCGATAGTGGATCGAGCTCTAATCCTTCGAGTGAGAAAAGCTTATGGAGATTGGTGTGGAGGCTTGAATGCCAGTCTCGAGTTAAAGCTACTGTGTGGAGGGTGCTGAGAAATTCTCTTCCAACGATAAAGAATATTAAAAAGAGGGGAATATTAACTAACGATCTGTGTTTTCTGTGCAGATCTAAGCGGGAAGATGGAGTGCATACATTTTGGAATTGCAAGGTGTCTAGAAGAATTTGGAATGTTTATATCCCTAAGCTTACTAAGGTGTTCTCACTGTGCAGGGAATGGTGGAGTTCTAGGTAATATTGGGAGGAAGCTATTCTAGTTCTCGATAAGCAGGAGCGCAGCATGGCGAGGCAAATCCTATGGGCGATTTGGAAAATCAGAAATCAATACAAATAAGCTGTCATGCAGAAAAATTCCCAACATTGTTTCAGAGATATCAAAGATATTATTGAAGCGTTTATTATGCGGAATGGAGCTAACCTGAGGCCGAGAGAATCGAAGGAACCAGGGGAGTCACGTTTCTTGGGAGCCGTCGGTGACCGGGCATTGGAAGTTGAACACCAATGCTTCTTCGTTCGACGCAAAGAAAAGCGGGGGGCTGGGATGGACCATTCGTGACTCGACGGGTTCTTTGATTGGAGCCGACTGCGATCAAATTCAGAGATTTGGGGATATTAAGTGTATCGGAGCGGAAGCAATTCTCAAGGGAATGAATCATATTGCGGATCTTCTAAGGAAGGATAGGAATTTCATGCCTTACCCGTTAATCGTGGAGTCTGATTCCTTGGAGGTGATTAGTCTTCTTCAGTAG

mRNA sequence

ATGCTCTCGCCTCTCAAATGTCTAGTTGCGATAGTGGATCGAGCTCTAATCCTTCGAGTGAGAAAAGCTTATGGAGATTGGTGTGGAGGCTTGAATGCCAGTCTCGAGTTAAAGCTACTGTGTGGAGGATCTAAGCGGGAAGATGGAGTGCATACATTTTGGAATTGCAAGGTGTCTAGAAGAATTTGGAATGTTTATATCCCTAAGCTTACTAAGGTGTTCTCACTGTGCAGGGAATGGTGGAGTTCTAGGAACCAGGGGAGTCACGTTTCTTGGGAGCCGTCGGTGACCGGGCATTGGAAGTTGAACACCAATGCTTCTTCGTTCGACGCAAAGAAAAGCGGGGGGCTGGGATGGACCATTCGTGACTCGACGGGTTCTTTGATTGGAGCCGACTGCGATCAAATTCAGAGATTTGGGGATATTAAGTGTATCGGAGCGGAAGCAATTCTCAAGGGAATGAATCATATTGCGGATCTTCTAAGGAAGGATAGGAATTTCATGCCTTACCCGTTAATCGTGGAGTCTGATTCCTTGGAGGTGATTAGTCTTCTTCAGTAG

Coding sequence (CDS)

ATGCTCTCGCCTCTCAAATGTCTAGTTGCGATAGTGGATCGAGCTCTAATCCTTCGAGTGAGAAAAGCTTATGGAGATTGGTGTGGAGGCTTGAATGCCAGTCTCGAGTTAAAGCTACTGTGTGGAGGATCTAAGCGGGAAGATGGAGTGCATACATTTTGGAATTGCAAGGTGTCTAGAAGAATTTGGAATGTTTATATCCCTAAGCTTACTAAGGTGTTCTCACTGTGCAGGGAATGGTGGAGTTCTAGGAACCAGGGGAGTCACGTTTCTTGGGAGCCGTCGGTGACCGGGCATTGGAAGTTGAACACCAATGCTTCTTCGTTCGACGCAAAGAAAAGCGGGGGGCTGGGATGGACCATTCGTGACTCGACGGGTTCTTTGATTGGAGCCGACTGCGATCAAATTCAGAGATTTGGGGATATTAAGTGTATCGGAGCGGAAGCAATTCTCAAGGGAATGAATCATATTGCGGATCTTCTAAGGAAGGATAGGAATTTCATGCCTTACCCGTTAATCGTGGAGTCTGATTCCTTGGAGGTGATTAGTCTTCTTCAGTAG

Protein sequence

MLSPLKCLVAIVDRALILRVRKAYGDWCGGLNASLELKLLCGGSKREDGVHTFWNCKVSRRIWNVYIPKLTKVFSLCREWWSSRNQGSHVSWEPSVTGHWKLNTNASSFDAKKSGGLGWTIRDSTGSLIGADCDQIQRFGDIKCIGAEAILKGMNHIADLLRKDRNFMPYPLIVESDSLEVISLLQ

Homology

[Close]

BLAST of Lag0026630.1 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 62.8 bits (151), Expect = 3.7e-06
Identity = 36/95 (37.89%), Postives = 53/95 (55.79%), Query Frame = 0


Query: 92  WEPSVTGHWKLNTNASSFDAKKSGGLGWTIRDSTGSLIGADCDQIQRFGDIKCIGAEAIL 151
           W+P  +  WKLNT+A+      +GG+GW +RD  G +I ADC  I+   +I  +   AI 
Sbjct: 79  WKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAIC 138

Query: 152 KGMNHI-ADLLRKDRNFMPYPLIVESDSLEVISLL 186
           +G+  I  +  R  +     P+ +ESDSLE I LL
Sbjct: 139 EGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLL 173

[Close]

BLAST of Lag0026630.1 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 62.4 bits (150), Expect = 4.8e-06
Identity = 37/94 (39.36%), Postives = 50/94 (53.19%), Query Frame = 0


Query: 92  WEPSVTGHWKLNTNASSFDAKKSGGLGWTIRDSTGSLIGADCDQIQRFGDIKCIGAEAIL 151
           W+P  +  WKLNTNA+      +GG+GW +RD  G +I A C  I+   +I  +   AI 
Sbjct: 79  WKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAIC 138

Query: 152 KGMNHIADLLRKDRNFMPYPLIVESDSLEVISLL 186
           +G       LR  R     P+ +ESDSLE I LL
Sbjct: 139 EG-------LRAIRQEHCRPIHLESDSLEAIHLL 165

[Close]

BLAST of Lag0026630.1 vs. NCBI nr
Match: XP_024041100.1 (uncharacterized protein LOC112098855 isoform X1 [Citrus clementina] >XP_024041101.1 uncharacterized protein LOC112098855 isoform X1 [Citrus clementina] >XP_024041102.1 uncharacterized protein LOC112098855 isoform X1 [Citrus clementina])

HSP 1 Score: 62.0 bits (149), Expect = 6.3e-06
Identity = 36/102 (35.29%), Postives = 56/102 (54.90%), Query Frame = 0


Query: 83  SRNQGSHVSWEPSVTGHWKLNTNASSFDAKKSGGLGWTIRDSTGSLIGADCDQIQRFGDI 142
           S++  +   W P   G +K+N +A+   A    GLG  +RDS+G ++ A        GD+
Sbjct: 175 SQHNNNQQVWNPPPIGWYKVNVDAAIQMADSKAGLGVVVRDSSGKILAAAVQSTGFRGDV 234

Query: 143 KCIGAEAILKGMNHIADLLRKDRNFMPYPLIVESDSLEVISL 185
            C+ AEA+L G+  +A   + D      P+I+ESDSLEV+ L
Sbjct: 235 ACMEAEAVLFGI-QVACQAKCD------PIIIESDSLEVVEL 269

[Close]

BLAST of Lag0026630.1 vs. NCBI nr
Match: XP_024041104.1 (uncharacterized protein LOC112098855 isoform X3 [Citrus clementina])

HSP 1 Score: 62.0 bits (149), Expect = 6.3e-06
Identity = 36/102 (35.29%), Postives = 56/102 (54.90%), Query Frame = 0


Query: 83  SRNQGSHVSWEPSVTGHWKLNTNASSFDAKKSGGLGWTIRDSTGSLIGADCDQIQRFGDI 142
           S++  +   W P   G +K+N +A+   A    GLG  +RDS+G ++ A        GD+
Sbjct: 104 SQHNNNQQVWNPPPIGWYKVNVDAAIQMADSKAGLGVVVRDSSGKILAAAVQSTGFRGDV 163

Query: 143 KCIGAEAILKGMNHIADLLRKDRNFMPYPLIVESDSLEVISL 185
            C+ AEA+L G+  +A   + D      P+I+ESDSLEV+ L
Sbjct: 164 ACMEAEAVLFGI-QVACQAKCD------PIIIESDSLEVVEL 198

[Close]

BLAST of Lag0026630.1 vs. NCBI nr
Match: XP_024041103.1 (uncharacterized protein LOC112098855 isoform X2 [Citrus clementina])

HSP 1 Score: 62.0 bits (149), Expect = 6.3e-06
Identity = 36/102 (35.29%), Postives = 56/102 (54.90%), Query Frame = 0


Query: 83  SRNQGSHVSWEPSVTGHWKLNTNASSFDAKKSGGLGWTIRDSTGSLIGADCDQIQRFGDI 142
           S++  +   W P   G +K+N +A+   A    GLG  +RDS+G ++ A        GD+
Sbjct: 115 SQHNNNQQVWNPPPIGWYKVNVDAAIQMADSKAGLGVVVRDSSGKILAAAVQSTGFRGDV 174

Query: 143 KCIGAEAILKGMNHIADLLRKDRNFMPYPLIVESDSLEVISL 185
            C+ AEA+L G+  +A   + D      P+I+ESDSLEV+ L
Sbjct: 175 ACMEAEAVLFGI-QVACQAKCD------PIIIESDSLEVVEL 209

The following BLAST results are available for this feature:

BLAST of Lag0026630.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156777.1	3.7e-06	37.89	uncharacterized protein LOC111023608 [Momordica charantia]	[more]
XP_022143535.1	4.8e-06	39.36	uncharacterized protein LOC111013412 [Momordica charantia]	[more]
XP_024041100.1	6.3e-06	35.29	uncharacterized protein LOC112098855 isoform X1 [Citrus clementina] >XP_02404110...	[more]
XP_024041104.1	6.3e-06	35.29	uncharacterized protein LOC112098855 isoform X3 [Citrus clementina]	[more]
XP_024041103.1	6.3e-06	35.29	uncharacterized protein LOC112098855 isoform X2 [Citrus clementina]	[more]

BLAST of Lag0026630.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 109..185 e-value: 2.0E-5 score: 24.4

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0026630	Lag0026630	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0026630.1.exon3	Lag0026630.1.exon3	exon
Lag0026630.1.exon2	Lag0026630.1.exon2	exon
Lag0026630.1.exon1	Lag0026630.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0026630.1	cds.Lag0026630.1_3	CDS
cds.Lag0026630.1	cds.Lag0026630.1_2	CDS
cds.Lag0026630.1	cds.Lag0026630.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0026630.1	Lag0026630.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity