Lag0026181 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0026181
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Girdin-like
Location	chr10: 31698186 .. 31698527 (-)
RNA-Seq Expression	Lag0026181
Synteny	Lag0026181

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCAATGTGTCCATGCATTCATCCTTGGTACCTAAGTATGATGAATTAGGTGTTGTTCTCCAATGGGCCGAGAAAATACAACAAACATTTTGTGATAGCTTAACTGATTCTTCTCAGATATCTTTACCAACTGGTTGTCAAATCTCTTTCACACAAAATGATTTGACCAAATTGAAGGCAATATGGGAGAGTTTATCACCAGAGCGTAGATTTATGTTCTCGAAGAAGTATGGTCATATAGCGGATTTGATGTATATTCCAGTGAACCATTTTACTTTAAGGGCTATAGTTCACTTTTGGGATCCAGCTTACTGTTGTTTCTCGTTCGGGTCGTTTTAA

mRNA sequence

ATGTCCAATGTGTCCATGCATTCATCCTTGGTACCTAAGTATGATGAATTAGGTGTTGTTCTCCAATGGGCCGAGAAAATACAACAAACATTTTGTGATAGCTTAACTGATTCTTCTCAGATATCTTTACCAACTGGTTGTCAAATCTCTTTCACACAAAATGATTTGACCAAATTGAAGGCAATATGGGAGAGTTTATCACCAGAGCGTAGATTTATGTTCTCGAAGAAGTATGGTCATATAGCGGATTTGATGTATATTCCAGTGAACCATTTTACTTTAAGGGCTATAGTTCACTTTTGGGATCCAGCTTACTGTTGTTTCTCGTTCGGGTCGTTTTAA

Coding sequence (CDS)

ATGTCCAATGTGTCCATGCATTCATCCTTGGTACCTAAGTATGATGAATTAGGTGTTGTTCTCCAATGGGCCGAGAAAATACAACAAACATTTTGTGATAGCTTAACTGATTCTTCTCAGATATCTTTACCAACTGGTTGTCAAATCTCTTTCACACAAAATGATTTGACCAAATTGAAGGCAATATGGGAGAGTTTATCACCAGAGCGTAGATTTATGTTCTCGAAGAAGTATGGTCATATAGCGGATTTGATGTATATTCCAGTGAACCATTTTACTTTAAGGGCTATAGTTCACTTTTGGGATCCAGCTTACTGTTGTTTCTCGTTCGGGTCGTTTTAA

Protein sequence

MSNVSMHSSLVPKYDELGVVLQWAEKIQQTFCDSLTDSSQISLPTGCQISFTQNDLTKLKAIWESLSPERRFMFSKKYGHIADLMYIPVNHFTLRAIVHFWDPAYCCFSFGSF

Homology

[Close]

BLAST of Lag0026181 vs. NCBI nr
Match: KAA0066094.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 168.3 bits (425), Expect = 3.8e-38
Identity = 77/112 (68.75%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 1   MSNVSMHSSLVPKYDELGVVLQWAEKIQQTFCDSLTDSSQISLPTGCQISFTQNDLTKLK 60
           MSN+SMHSS   K+DE   VL+WAE++QQ F D + +SSQIS+ + CQ+SFTQNDL  LK
Sbjct: 1   MSNMSMHSSFESKFDEPSDVLKWAEEMQQKFGDGINNSSQISVLSRCQLSFTQNDLANLK 60

Query: 61  AIWESLSPERRFMFSKKYGHIADLMYIPVNHFTLRAIVHFWDPAYCCFSFGS 113
            IWE+L+P+RRFMFSKKYGHIA+LMYIPVN+F LRAI++FWDPAY CF+FGS
Sbjct: 61  MIWEALTPQRRFMFSKKYGHIAELMYIPVNYFALRAIINFWDPAYGCFTFGS 112

[Close]

BLAST of Lag0026181 vs. NCBI nr
Match: KAA0060423.1 (uncharacterized protein E6C27_scaffold22G002420 [Cucumis melo var. makuwa])

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-37
Identity = 76/112 (67.86%), Postives = 94/112 (83.93%), Query Frame = 0


Query: 1   MSNVSMHSSLVPKYDELGVVLQWAEKIQQTFCDSLTDSSQISLPTGCQISFTQNDLTKLK 60
           MSN+SMHSS   K+DE   VL+WAE++QQ F D + +SSQIS+ + CQ+SFTQNDL  LK
Sbjct: 1   MSNMSMHSSFESKFDEPSDVLKWAEEMQQKFGDDINNSSQISVLSRCQLSFTQNDLANLK 60

Query: 61  AIWESLSPERRFMFSKKYGHIADLMYIPVNHFTLRAIVHFWDPAYCCFSFGS 113
            IWE+L+P+RRFMFSKKYGHI +LMYIPVN+F LRAI++FWDPAY CF+FGS
Sbjct: 61  MIWEALTPQRRFMFSKKYGHIVELMYIPVNYFALRAIINFWDPAYGCFTFGS 112

[Close]

BLAST of Lag0026181 vs. NCBI nr
Match: TYK07552.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 161.4 bits (407), Expect = 4.6e-36
Identity = 74/112 (66.07%), Postives = 93/112 (83.04%), Query Frame = 0


Query: 1   MSNVSMHSSLVPKYDELGVVLQWAEKIQQTFCDSLTDSSQISLPTGCQISFTQNDLTKLK 60
           MSN+SMHSS   K+DE   VL+WAE++QQ F D + +SSQIS+ + CQ+S T+NDL  LK
Sbjct: 1   MSNMSMHSSFESKFDESSDVLKWAEEMQQKFGDGINNSSQISVLSRCQLSSTKNDLANLK 60

Query: 61  AIWESLSPERRFMFSKKYGHIADLMYIPVNHFTLRAIVHFWDPAYCCFSFGS 113
            IWE+L+P+RRFMFSKKYGHIA+LMY PVN+F LRAI++FWDPAY CF+FGS
Sbjct: 61  MIWEALTPQRRFMFSKKYGHIAELMYKPVNYFALRAIINFWDPAYGCFTFGS 112

[Close]

BLAST of Lag0026181 vs. NCBI nr
Match: KAA0056623.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 160.6 bits (405), Expect = 7.9e-36
Identity = 74/112 (66.07%), Postives = 93/112 (83.04%), Query Frame = 0


Query: 1   MSNVSMHSSLVPKYDELGVVLQWAEKIQQTFCDSLTDSSQISLPTGCQISFTQNDLTKLK 60
           MSN+SMHSS   K+DE   VL+WAE++QQ F D + +SS+IS+ + CQ+S TQNDL  LK
Sbjct: 1   MSNISMHSSFESKFDEPSDVLKWAEEMQQKFGDGINNSSKISVLSRCQLSSTQNDLANLK 60

Query: 61  AIWESLSPERRFMFSKKYGHIADLMYIPVNHFTLRAIVHFWDPAYCCFSFGS 113
            IWE+L+P+RRFMFSKKYGHIA+LMYI VN+F LRAI++FWDPAY CF+FGS
Sbjct: 61  MIWEALTPQRRFMFSKKYGHIAELMYILVNYFALRAIINFWDPAYGCFTFGS 112

[Close]

BLAST of Lag0026181 vs. NCBI nr
Match: KAA0044912.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 1.9e-21
Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = 0


Query: 1  MSNVSMHSSLVPKYDELGVVLQWAEKIQQTFCDSLTDSSQISLPTGCQISFTQNDLTKLK 60
          MSN+S HSS   K+DE   VL+WAE++QQ F D + +SSQIS+ + CQ+SFTQN L  LK
Sbjct: 1  MSNMSRHSSFESKFDEPSDVLKWAEEMQQKFGDGINNSSQISVLSRCQLSFTQNVLANLK 60

Query: 61 AIWESLSPERRFMFSKKYGHIADLM 86
           IWE+L+P+RRFMFSKKYGHIA+L+
Sbjct: 61 MIWEALTPQRRFMFSKKYGHIAELI 85

The following BLAST results are available for this feature:

BLAST of Lag0026181 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066094.1	3.8e-38	68.75	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0060423.1	1.1e-37	67.86	uncharacterized protein E6C27_scaffold22G002420 [Cucumis melo var. makuwa]	[more]
TYK07552.1	4.6e-36	66.07	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0056623.1	7.9e-36	66.07	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0044912.1	1.9e-21	62.35	girdin-like [Cucumis melo var. makuwa]	[more]

BLAST of Lag0026181 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0026181.1	Lag0026181.1	mRNA