Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCTGATTCCAATTTCTGGCTTCCTCCCCACTTTTTATCCGACCACGACACCCTCCCCGGAAAACCCACCTCCGCCGCCGCCTTCCCCACCGACTTCCCTTATGACTTCAGCCCCTCTGCCGTTGATTCTCCAGTCGAATCTGTCCTTGGCTCCAACGAGACCGACAGTACCGCTAGAAACGACGATGACGAGGAAGACTTTCTCGCTACGTTGACGCAGCGGCTTACTCAGTCCACCCTTCGTGATTATGAAAAACTTG GTTTCTGTCCACAAATCCCAAGTACCCATCTGTTGATTTTTCTTTTATTGACTCGATTTTTGTCTCTTCGATGAGTTTCTGATTTCCGGGCGACTCTCTTTTGCTTACCTTTCGTCGCCGACTTGAATCAGTACATCTCCGGCTCGGTTTTCCTTCTCCTCGTCTTCCAAACGCGTGGATTTTTTTTGTTCGACGCGGTGACTGGAAGCTTACCCACGGTGACTTGA mRNA sequence
ATGGCCTCTGATTCCAATTTCTGGCTTCCTCCCCACTTTTTATCCGACCACGACACCCTCCCCGGAAAACCCACCTCCGCCGCCGCCTTCCCCACCGACTTCCCTTATGACTTCAGCCCCTCTGCCGTTGATTCTCCAGTCGAATCTGTCCTTGGCTCCAACGAGACCGACAGTACCGCTAGAAACGACGATGACGAGGAAGACTTTCTCGCTACGTTGACGCAGCGGCTTACTCAGTCCACCCTTCGTGATTATGAAAAACTTGTTTCTGATTTCCGGGCGACTCTCTTTTGCTTACCTTTCGTCGCCGACTTGAATCAGTACATCTCCGGCTCGGTTTTCCTTCTCCTCGTCTTCCAAACGCGTGGATTTTTTTTGTTCGACGCGGTGACTGGAAGCTTACCCACGGTGACTTGA Coding sequence (CDS)
ATGGCCTCTGATTCCAATTTCTGGCTTCCTCCCCACTTTTTATCCGACCACGACACCCTCCCCGGAAAACCCACCTCCGCCGCCGCCTTCCCCACCGACTTCCCTTATGACTTCAGCCCCTCTGCCGTTGATTCTCCAGTCGAATCTGTCCTTGGCTCCAACGAGACCGACAGTACCGCTAGAAACGACGATGACGAGGAAGACTTTCTCGCTACGTTGACGCAGCGGCTTACTCAGTCCACCCTTCGTGATTATGAAAAACTTGTTTCTGATTTCCGGGCGACTCTCTTTTGCTTACCTTTCGTCGCCGACTTGAATCAGTACATCTCCGGCTCGGTTTTCCTTCTCCTCGTCTTCCAAACGCGTGGATTTTTTTTGTTCGACGCGGTGACTGGAAGCTTACCCACGGTGACTTGA Protein sequence
MASDSNFWLPPHFLSDHDTLPGKPTSAAAFPTDFPYDFSPSAVDSPVESVLGSNETDSTARNDDDEEDFLATLTQRLTQSTLRDYEKLVSDFRATLFCLPFVADLNQYISGSVFLLLVFQTRGFFLFDAVTGSLPTVT
Homology
BLAST of Lag0021445 vs. NCBI nr
Match:
XP_038893422.1 (uncharacterized protein LOC120082215 [Benincasa hispida])
HSP 1 Score: 127.5 bits (319), Expect = 9.0e-26
Identity = 68/91 (74.73%), Postives = 74/91 (81.32%), Query Frame = 0
Query: 1 MASDSNFWLPPHFLSDHDTLPGKPTSA-AAFPTDFPYDFSPSAVDSPVESVLGSNETDST 60 MASDSNFWLPPHFLSDHD LPG PTSA AAFPTDFPYDF+ S+V SPV+SVLG Sbjct: 1 MASDSNFWLPPHFLSDHDNLPGIPTSATAAFPTDFPYDFNSSSVHSPVDSVLGD------ 60 Query: 61 ARNDDDEEDFLATLTQRLTQSTLRDYEKLVS 91 +D+DEEDFLA LTQRLTQSTLRD +KL S Sbjct: 61 --DDNDEEDFLAALTQRLTQSTLRDSQKLPS 83
BLAST of Lag0021445 vs. NCBI nr
Match:
XP_008464895.1 (PREDICTED: uncharacterized protein LOC103502654 [Cucumis melo] >KAA0051556.1 WAS/WASL-interacting protein family member 2, putative isoform 1 [Cucumis melo var. makuwa] >TYK21266.1 WAS/WASL-interacting protein family member 2, putative isoform 1 [Cucumis melo var. makuwa])
HSP 1 Score: 122.9 bits (307), Expect = 2.2e-24
Identity = 63/90 (70.00%), Postives = 73/90 (81.11%), Query Frame = 0
Query: 1 MASDSNFWLPPHFLSDHDTLPGKPTSAAAFPTDFPYDFSPSAVDSPVESVLGSNETDSTA 60 MASDS F+LPPHFLSDHD LP KPTS+A FPTDFPYDF+ S+V SPV+SVLG ++ Sbjct: 1 MASDSTFYLPPHFLSDHDNLPPKPTSSALFPTDFPYDFTSSSVHSPVDSVLGDDD----- 60 Query: 61 RNDDDEEDFLATLTQRLTQSTLRDYEKLVS 91 +DDE+DFLA LTQRLTQSTLRD +KL S Sbjct: 61 --NDDEQDFLAALTQRLTQSTLRDSQKLPS 83
BLAST of Lag0021445 vs. NCBI nr
Match:
XP_004149945.1 (uncharacterized protein LOC101215147 [Cucumis sativus] >KGN50597.1 hypothetical protein Csa_021479 [Cucumis sativus])
HSP 1 Score: 122.9 bits (307), Expect = 2.2e-24
Identity = 63/90 (70.00%), Postives = 73/90 (81.11%), Query Frame = 0
Query: 1 MASDSNFWLPPHFLSDHDTLPGKPTSAAAFPTDFPYDFSPSAVDSPVESVLGSNETDSTA 60 MASDS F+LPPHFLSDHD LP KPTS+A FPTDFPYDF+ S+V SPV+SVLG ++ Sbjct: 1 MASDSTFYLPPHFLSDHDNLPPKPTSSALFPTDFPYDFTSSSVHSPVDSVLGDDD----- 60 Query: 61 RNDDDEEDFLATLTQRLTQSTLRDYEKLVS 91 +DDE+DFLA LTQRLTQSTLRD +KL S Sbjct: 61 --NDDEQDFLAALTQRLTQSTLRDSQKLPS 83
BLAST of Lag0021445 vs. NCBI nr
Match:
XP_022138921.1 (uncharacterized protein LOC111009981 [Momordica charantia])
HSP 1 Score: 107.8 bits (268), Expect = 7.4e-20
Identity = 56/86 (65.12%), Postives = 67/86 (77.91%), Query Frame = 0
Query: 5 SNFWLPPHFLSDHDTLPGKPTSAAAFPTDFPYDFSPSAVDSPVESVLGSNETDSTARNDD 64 + FWLPPHFLSDHD L GKPT+AAA FPYDF+ SA+DSP+ES+ TD +DD Sbjct: 9 ARFWLPPHFLSDHDNLAGKPTTAAA----FPYDFASSALDSPLESL----STDDDREDDD 68 Query: 65 DEEDFLATLTQRLTQSTLRDYEKLVS 91 DEEDFLA LTQRLTQSTLRD ++L++ Sbjct: 69 DEEDFLAALTQRLTQSTLRDSQRLIA 86
BLAST of Lag0021445 vs. NCBI nr
Match:
XP_022942517.1 (uncharacterized protein LOC111447530 [Cucurbita moschata])
HSP 1 Score: 89.0 bits (219), Expect = 3.5e-14
Identity = 52/90 (57.78%), Postives = 57/90 (63.33%), Query Frame = 0
Query: 1 MASDSNFWLPPHFLSDHDTLPGKPTSAAAFPTDFPYDFSPSAVDSPVESVLGSNETDSTA 60 MASDS FWLPPHFLSDH TLPGKP +A+ SP++SVL Sbjct: 1 MASDSTFWLPPHFLSDHHTLPGKPI---------------AALHSPLQSVL--------- 60 Query: 61 RNDDDEEDFLATLTQRLTQSTLRDYEKLVS 91 NDDD+EDFLA LTQRLT STLRD KLVS Sbjct: 61 LNDDDQEDFLAGLTQRLTHSTLRDRHKLVS 66
The following BLAST results are available for this feature:
Match Name E-value Identity Description
XP_038893422.1 9.0e-26 74.73 uncharacterized protein LOC120082215 [Benincasa hispida] [more]
XP_008464895.1 2.2e-24 70.00 PREDICTED: uncharacterized protein LOC103502654 [Cucumis melo] >KAA0051556.1 WAS... [more]
XP_004149945.1 2.2e-24 70.00 uncharacterized protein LOC101215147 [Cucumis sativus] >KGN50597.1 hypothetical ... [more]
XP_022138921.1 7.4e-20 65.12 uncharacterized protein LOC111009981 [Momordica charantia] [more]
XP_022942517.1 3.5e-14 57.78 uncharacterized protein LOC111447530 [Cucurbita moschata] [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
A T G G C C T C T G A T T C C A A T T T C T G G C T T C C T C C C C A C T T T T T A T C C G A C C A C G A C A C C C T C C C C G G A A A A C C C A C C T C C G C C G C C G C C T T C C C C A C C G A C T T C C C T T A T G A C T T C A G C C C C T C T G C C G T T G A T T C T C C A G T C G A A T C T G T C C T T G G C T C C A A C G A G A C C G A C A G T A C C G C T A G A A A C G A C G A T G A C G A G G A A G A C T T T C T C G C T A C G T T G A C G C A G C G G C T T A C T C A G T C C A C C C T T C G T G A T T A T G A A A A A C T T G T T T C T G A T T T C C G G G C G A C T C T C T T T T G C T T A C C T T T C G T C G C C G A C T T G A A T C A G T A C A T C T C C G G C T C G G T T T T C C T T C T C C T C G T C T T C C A A A C G C G T G G A T T T T T T T T G T T C G A C G C G G T G A C T G G A A G C T T A C C C A C G G T G A C T T G A 50 100 150 200 250 300 350 400 Score = Sequence mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 45..65
Relationships
The following mRNA feature(s) are a part of this gene: