Sequences
The following sequences are available for this feature:
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGCTTTTGGAAGCTCAAAGAATGAAAATGACGCACCACTCTACGCCAACAACTGTGGCTTCTACGGAAATCCGAAGAATCATAACTTGTGTTTGTTTGCTACGCCGCTTTCCTTAGAGAAACCGACGAAGATTCTCATGACGAGAGAGCTCAAACAATGTCGTTTGCTCAAAAAATCTGATCGGCACAGAACTCGCCGAAACTCACGATGCAGAACCAAATCTCGGAACGAGACGATCTCCGACGGCAGAGAGAGTTCCGAAACTTCTGAATTGGTAGCCGATTTGAATAATCTGGCGCCTAAAAGGAAAAATAGGTGCAAAATCTGCAAGAAGAAGGTAAGATTGTTGGGATTCAAGTGTCGGTGTGGAAGGAGAAGAAACCCAAAAACAAAATGGTGGCTGGGGTTTGGAGAATGGAGGCGACAAGATGGTGGCTAG
ATGGTTGCTTTTGGAAGCTCAAAGAATGAAAATGACGCACCACTCTACGCCAACAACTGTGGCTTCTACGGAAATCCGAAGAATCATAACTTGTGTTTGTTTGCTACGCCGCTTTCCTTAGAGAAACCGACGAAGATTCTCATGACGAGAGAGCTCAAACAATGTCGTTTGCTCAAAAAATCTGATCGGCACAGAACTCGCCGAAACTCACGATGCAGAACCAAATCTCGGAACGAGACGATCTCCGACGGCAGAGAGAGTTCCGAAACTTCTGAATTGGTAGCCGATTTGAATAATCTGGCGCCTAAAAGGAAAAATAGGTGCAAAATCTGCAAGAAGAAGGTAAGATTGTTGGGATTCAAGTGTCGGTGTGGAAGGAGAAGAAACCCAAAAACAAAATGGTGGCTGGGGTTTGGAGAATGGAGGCGACAAGATGGTGGCTAG
ATGGTTGCTTTTGGAAGCTCAAAGAATGAAAATGACGCACCACTCTACGCCAACAACTGTGGCTTCTACGGAAATCCGAAGAATCATAACTTGTGTTTGTTTGCTACGCCGCTTTCCTTAGAGAAACCGACGAAGATTCTCATGACGAGAGAGCTCAAACAATGTCGTTTGCTCAAAAAATCTGATCGGCACAGAACTCGCCGAAACTCACGATGCAGAACCAAATCTCGGAACGAGACGATCTCCGACGGCAGAGAGAGTTCCGAAACTTCTGAATTGGTAGCCGATTTGAATAATCTGGCGCCTAAAAGGAAAAATAGGTGCAAAATCTGCAAGAAGAAGGTAAGATTGTTGGGATTCAAGTGTCGGTGTGGAAGGAGAAGAAACCCAAAAACAAAATGGTGGCTGGGGTTTGGAGAATGGAGGCGACAAGATGGTGGCTAG
MVAFGSSKNENDAPLYANNCGFYGNPKNHNLCLFATPLSLEKPTKILMTRELKQCRLLKKSDRHRTRRNSRCRTKSRNETISDGRESSETSELVADLNNLAPKRKNRCKICKKKVRLLGFKCRCGRRRNPKTKWWLGFGEWRRQDGG
Homology
BLAST of Lag0017714 vs. NCBI nr
Match:
KAG7014809.1 (Zinc finger A20 and AN1 domain-containing stress-associated protein 10, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 105.5 bits (262), Expect = 3.9e-19
Identity = 63/125 (50.40%), Postives = 74/125 (59.20%), Query Frame = 0
BLAST of Lag0017714 vs. NCBI nr
Match:
KAG6576775.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 103.6 bits (257), Expect = 1.5e-18
Identity = 62/125 (49.60%), Postives = 73/125 (58.40%), Query Frame = 0
BLAST of Lag0017714 vs. NCBI nr
Match:
XP_023542516.1 (zinc finger A20 and AN1 domain-containing stress-associated protein 6-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 84.3 bits (207), Expect = 9.3e-13
Identity = 51/125 (40.80%), Postives = 69/125 (55.20%), Query Frame = 0
BLAST of Lag0017714 vs. NCBI nr
Match:
KAG6574126.1 (Zinc finger A20 and AN1 domain-containing stress-associated protein 6, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 83.6 bits (205), Expect = 1.6e-12
Identity = 51/125 (40.80%), Postives = 68/125 (54.40%), Query Frame = 0
BLAST of Lag0017714 vs. NCBI nr
Match:
KAG7013187.1 (Zinc finger A20 and AN1 domain-containing stress-associated protein 6, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 83.6 bits (205), Expect = 1.6e-12
Identity = 51/125 (40.80%), Postives = 68/125 (54.40%), Query Frame = 0
The following BLAST results are available for this feature:
Match Name E-value Identity Description
KAG7014809.1 3.9e-19 50.40 Zinc finger A20 and AN1 domain-containing stress-associated protein 10, partial ... [more] KAG6576775.1 1.5e-18 49.60 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more] XP_023542516.1 9.3e-13 40.80 zinc finger A20 and AN1 domain-containing stress-associated protein 6-like [Cucu... [more] KAG6574126.1 1.6e-12 40.80 Zinc finger A20 and AN1 domain-containing stress-associated protein 6, partial [... [more] KAG7013187.1 1.6e-12 40.80 Zinc finger A20 and AN1 domain-containing stress-associated protein 6, partial [... [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
A T G G T T G C T T T T G G A A G C T C A A A G A A T G A A A A T G A C G C A C C A C T C T A C G C C A A C A A C T G T G G C T T C T A C G G A A A T C C G A A G A A T C A T A A C T T G T G T T T G T T T G C T A C G C C G C T T T C C T T A G A G A A A C C G A C G A A G A T T C T C A T G A C G A G A G A G C T C A A A C A A T G T C G T T T G C T C A A A A A A T C T G A T C G G C A C A G A A C T C G C C G A A A C T C A C G A T G C A G A A C C A A A T C T C G G A A C G A G A C G A T C T C C G A C G G C A G A G A G A G T T C C G A A A C T T C T G A A T T G G T A G C C G A T T T G A A T A A T C T G G C G C C T A A A A G G A A A A A T A G G T G C A A A A T C T G C A A G A A G A A G G T A A G A T T G T T G G G A T T C A A G T G T C G G T G T G G A A G G A G A A G A A A C C C A A A A A C A A A A T G G T G G C T G G G G T T T G G A G A A T G G A G G C G A C A A G A T G G T G G C T A G 50 100 150 200 250 300 350 400 Expect = 2.1E-7 / Score = 32.8 Score = Expect = 1.1E-4 / Score = 22.0 Expect = 6.1E-7 / Score = 31.0 Score = Score = Score = Score = Sequence G3DSA:4.10.1110.10 SSF118310 PF01754 G3DSA:1.20.5.4770 mobidb-lite mobidb-lite PTHR10634:SF116 PTHR10634
IPR Term IPR Description Source Source Term Source Description Alignment
IPR035896 AN1-like Zinc finger GENE3D 4.10.1110.10 coord: 78..127 IPR035896 AN1-like Zinc finger SUPERFAMILY 118310 AN1-like Zinc finger coord: 99..126 IPR002653 Zinc finger, A20-type PFAM PF01754 zf-A20 coord: 17..32 None No IPR available GENE3D 1.20.5.4770 coord: 5..33 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 61..89 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 73..89 None No IPR available PANTHER PTHR10634:SF116 ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 10 coord: 11..126 None No IPR available PANTHER PTHR10634 AN1-TYPE ZINC FINGER PROTEIN coord: 11..126
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category
Term Accession
Term Name
molecular_function
GO:0003677 DNA binding
molecular_function
GO:0008270 zinc ion binding
