Lag0017714.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017714.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	zinc finger A20 and AN1 domain-containing stress-associated protein 10-like
Location	chr5: 7533050 .. 7533493 (-)
Sequence length	444
RNA-Seq Expression	Lag0017714.1
Synteny	Lag0017714.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGCTTTTGGAAGCTCAAAGAATGAAAATGACGCACCACTCTACGCCAACAACTGTGGCTTCTACGGAAATCCGAAGAATCATAACTTGTGTTTGTTTGCTACGCCGCTTTCCTTAGAGAAACCGACGAAGATTCTCATGACGAGAGAGCTCAAACAATGTCGTTTGCTCAAAAAATCTGATCGGCACAGAACTCGCCGAAACTCACGATGCAGAACCAAATCTCGGAACGAGACGATCTCCGACGGCAGAGAGAGTTCCGAAACTTCTGAATTGGTAGCCGATTTGAATAATCTGGCGCCTAAAAGGAAAAATAGGTGCAAAATCTGCAAGAAGAAGGTAAGATTGTTGGGATTCAAGTGTCGGTGTGGAAGGAGAAGAAACCCAAAAACAAAATGGTGGCTGGGGTTTGGAGAATGGAGGCGACAAGATGGTGGCTAG

mRNA sequence

ATGGTTGCTTTTGGAAGCTCAAAGAATGAAAATGACGCACCACTCTACGCCAACAACTGTGGCTTCTACGGAAATCCGAAGAATCATAACTTGTGTTTGTTTGCTACGCCGCTTTCCTTAGAGAAACCGACGAAGATTCTCATGACGAGAGAGCTCAAACAATGTCGTTTGCTCAAAAAATCTGATCGGCACAGAACTCGCCGAAACTCACGATGCAGAACCAAATCTCGGAACGAGACGATCTCCGACGGCAGAGAGAGTTCCGAAACTTCTGAATTGGTAGCCGATTTGAATAATCTGGCGCCTAAAAGGAAAAATAGGTGCAAAATCTGCAAGAAGAAGGTAAGATTGTTGGGATTCAAGTGTCGGTGTGGAAGGAGAAGAAACCCAAAAACAAAATGGTGGCTGGGGTTTGGAGAATGGAGGCGACAAGATGGTGGCTAG

Coding sequence (CDS)

ATGGTTGCTTTTGGAAGCTCAAAGAATGAAAATGACGCACCACTCTACGCCAACAACTGTGGCTTCTACGGAAATCCGAAGAATCATAACTTGTGTTTGTTTGCTACGCCGCTTTCCTTAGAGAAACCGACGAAGATTCTCATGACGAGAGAGCTCAAACAATGTCGTTTGCTCAAAAAATCTGATCGGCACAGAACTCGCCGAAACTCACGATGCAGAACCAAATCTCGGAACGAGACGATCTCCGACGGCAGAGAGAGTTCCGAAACTTCTGAATTGGTAGCCGATTTGAATAATCTGGCGCCTAAAAGGAAAAATAGGTGCAAAATCTGCAAGAAGAAGGTAAGATTGTTGGGATTCAAGTGTCGGTGTGGAAGGAGAAGAAACCCAAAAACAAAATGGTGGCTGGGGTTTGGAGAATGGAGGCGACAAGATGGTGGCTAG

Protein sequence

MVAFGSSKNENDAPLYANNCGFYGNPKNHNLCLFATPLSLEKPTKILMTRELKQCRLLKKSDRHRTRRNSRCRTKSRNETISDGRESSETSELVADLNNLAPKRKNRCKICKKKVRLLGFKCRCGRRRNPKTKWWLGFGEWRRQDGG

Homology

[Close]

BLAST of Lag0017714.1 vs. NCBI nr
Match: KAG7014809.1 (Zinc finger A20 and AN1 domain-containing stress-associated protein 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105.5 bits (262), Expect = 3.9e-19
Identity = 63/125 (50.40%), Postives = 74/125 (59.20%), Query Frame = 0


Query: 1   MVAFGSSKNENDAPLYANNCGFYGNPKNHNLCLFATPLSLEKPTKILMTRELKQCRLLKK 60
           M  FGSSKN+NDAPL ANNCGFYG+PKN NLC F     L++  +     E    R+ ++
Sbjct: 1   MAGFGSSKNDNDAPLCANNCGFYGSPKNRNLCSFCYAAFLKETGENSERLENSNHRIREE 60

Query: 61  SDRHRTRRNSRCRTKSRNETISDGRESSETSELVADLNNLAPKRKNRCKICKKKVRLLGF 120
               R RR                 +SSETSE VADLNN A K K RCKICKKK+ +LGF
Sbjct: 61  EPNLRKRR------------FPWAGQSSETSEPVADLNNPANKTKIRCKICKKKIGMLGF 113

Query: 121 KCRCG 126
            CRCG
Sbjct: 121 NCRCG 113

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BLAST of Lag0017714.1 vs. NCBI nr
Match: KAG6576775.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 103.6 bits (257), Expect = 1.5e-18
Identity = 62/125 (49.60%), Postives = 73/125 (58.40%), Query Frame = 0


Query: 1   MVAFGSSKNENDAPLYANNCGFYGNPKNHNLCLFATPLSLEKPTKILMTRELKQCRLLKK 60
           M  FGSS N+NDAPL ANNCGFYG+PKN NLC F     L++  +     E    R+ ++
Sbjct: 862 MAGFGSSNNDNDAPLCANNCGFYGSPKNRNLCSFCYAAFLKETGENSERLENSNHRIREE 921

Query: 61  SDRHRTRRNSRCRTKSRNETISDGRESSETSELVADLNNLAPKRKNRCKICKKKVRLLGF 120
               R RR                 +SSETSE VADLNN A K K RCKICKKK+ +LGF
Sbjct: 922 EPNLRKRR------------FPWAGQSSETSEPVADLNNPANKTKIRCKICKKKIGMLGF 974

Query: 121 KCRCG 126
            CRCG
Sbjct: 982 NCRCG 974

[Close]

BLAST of Lag0017714.1 vs. NCBI nr
Match: XP_023542516.1 (zinc finger A20 and AN1 domain-containing stress-associated protein 6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 84.3 bits (207), Expect = 9.3e-13
Identity = 51/125 (40.80%), Postives = 69/125 (55.20%), Query Frame = 0


Query: 1   MVAFGSSKNENDAPLYANNCGFYGNPKNHNLCLFATPLSLEKPTKILMTRELKQCRLLKK 60
           M  FGSS+N ND+PL ANNCGF+GNPK  NLC       L++    + T         K 
Sbjct: 1   MAGFGSSENSNDSPLCANNCGFFGNPKTRNLCSICYAAFLKENLISIPT---------KP 60

Query: 61  SDRHRTRRNSRCRTKSRNETISDGRESSETSELVADLNNLAPKRKNRCKICKKKVRLLGF 120
            +  + R++S    KS  E+I      +  +   ++ ++ AP RKNRC +C KKV LLGF
Sbjct: 61  DEVAQRRQDSDDSLKSDLESIEVSESETAMNPSCSETDSKAPARKNRCGLCNKKVGLLGF 116

Query: 121 KCRCG 126
            CRCG
Sbjct: 121 SCRCG 116

[Close]

BLAST of Lag0017714.1 vs. NCBI nr
Match: KAG6574126.1 (Zinc finger A20 and AN1 domain-containing stress-associated protein 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 83.6 bits (205), Expect = 1.6e-12
Identity = 51/125 (40.80%), Postives = 68/125 (54.40%), Query Frame = 0


Query: 1   MVAFGSSKNENDAPLYANNCGFYGNPKNHNLCLFATPLSLEKPTKILMTRELKQCRLLKK 60
           M  FGSS+N ND+PL ANNCGF+GNPK  NLC       L++    + T         K 
Sbjct: 1   MAGFGSSENSNDSPLCANNCGFFGNPKTRNLCSICYAAFLKENLISIPT---------KP 60

Query: 61  SDRHRTRRNSRCRTKSRNETISDGRESSETSELVADLNNLAPKRKNRCKICKKKVRLLGF 120
            +  + R++S    KS  E+I      +  +    + ++ AP RKNRC +C KKV LLGF
Sbjct: 61  DEVAQRRQDSDDSLKSDLESIEVSESETAMNPSCPETDSKAPARKNRCGLCNKKVGLLGF 116

Query: 121 KCRCG 126
            CRCG
Sbjct: 121 SCRCG 116

[Close]

BLAST of Lag0017714.1 vs. NCBI nr
Match: KAG7013187.1 (Zinc finger A20 and AN1 domain-containing stress-associated protein 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 83.6 bits (205), Expect = 1.6e-12
Identity = 51/125 (40.80%), Postives = 68/125 (54.40%), Query Frame = 0


Query: 1   MVAFGSSKNENDAPLYANNCGFYGNPKNHNLCLFATPLSLEKPTKILMTRELKQCRLLKK 60
           M  FGSS+N ND+PL ANNCGF+GNPK  NLC       L++    + T         K 
Sbjct: 1   MAGFGSSENSNDSPLCANNCGFFGNPKTRNLCSICYAAFLKENLISIPT---------KP 60

Query: 61  SDRHRTRRNSRCRTKSRNETISDGRESSETSELVADLNNLAPKRKNRCKICKKKVRLLGF 120
            +  + R++S    KS  E+I      +  +    + ++ AP RKNRC +C KKV LLGF
Sbjct: 61  DEVAQRRQDSDDSLKSDLESIEVSESETAMNPSCPETDSKAPARKNRCGLCNKKVGLLGF 116

Query: 121 KCRCG 126
            CRCG
Sbjct: 121 SCRCG 116

The following BLAST results are available for this feature:

BLAST of Lag0017714.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014809.1	3.9e-19	50.40	Zinc finger A20 and AN1 domain-containing stress-associated protein 10, partial ...	[more]
KAG6576775.1	1.5e-18	49.60	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
XP_023542516.1	9.3e-13	40.80	zinc finger A20 and AN1 domain-containing stress-associated protein 6-like [Cucu...	[more]
KAG6574126.1	1.6e-12	40.80	Zinc finger A20 and AN1 domain-containing stress-associated protein 6, partial [...	[more]
KAG7013187.1	1.6e-12	40.80	Zinc finger A20 and AN1 domain-containing stress-associated protein 6, partial [...	[more]

BLAST of Lag0017714.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035896	AN1-like Zinc finger	GENE3D	4.10.1110.10		coord: 78..127 e-value: 2.1E-7 score: 32.8
IPR035896	AN1-like Zinc finger	SUPERFAMILY	118310	AN1-like Zinc finger	coord: 99..126
IPR002653	Zinc finger, A20-type	PFAM	PF01754	zf-A20	coord: 17..32 e-value: 1.1E-4 score: 22.0
None	No IPR available	GENE3D	1.20.5.4770		coord: 5..33 e-value: 6.1E-7 score: 31.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..89
None	No IPR available	PANTHER	PTHR10634:SF116	ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 10	coord: 11..126
None	No IPR available	PANTHER	PTHR10634	AN1-TYPE ZINC FINGER PROTEIN	coord: 11..126

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0017714	Lag0017714	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0017714.1.exon1	Lag0017714.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0017714.1	cds.Lag0017714.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0017714.1	Lag0017714.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding