Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAAGATAGGTTTTAGCTCAGCTTGGATAAAGAAGATTGGCATGTGTGTGGAATCTGTATCCTTTTCGATCCTTATTAATGGTAGTTGTTATGAATCTTTTAAGCCCTCACGAGGGCTTAGACAGGGCGATCCGTTATCTCCTTATTTATTTCTCATGTGTGATGAGGGACTATCTAGCCTCCTAAAAAAGGCCGATATATCTCAAAATATTTCAGGTCTTAGAATTGCAAAAACGGCACCACCTATCTCGCACCTCTTTTTTGCAGATGATAGTTTACTTTTTCTCAAAGCGCGAAAGGAGGAATTCGATGAGATGCAACGAATCGTGAAAGTATATGAAGCAGCCACAGGACAGATCGTTAATTTTGATAAATCGGAGATAGCTTTTGGGGCCGGAGTGGCAAATGAAGCAAAAGGCTTTTTAGCCAACATTTTAAAAGTCAAGATAGTCCAAGACCATGGAAAGTATCTTGGATGTCCGTCTTCCCTATCCAGAAATAAGAAAGCTTCTCTGAACTACATAACATCTAAAGTTCAGAATGTGTTGTAG
mRNA sequence
ATGGCTAAGATAGGTTTTAGCTCAGCTTGGATAAAGAAGATTGGCATGTGTGTGGAATCTGTATCCTTTTCGATCCTTATTAATGGTAGTTGTTATGAATCTTTTAAGCCCTCACGAGGGCTTAGACAGGGCGATCCGTTATCTCCTTATTTATTTCTCATGTGTGATGAGGGACTATCTAGCCTCCTAAAAAAGGCCGATATATCTCAAAATATTTCAGGTCTTAGAATTGCAAAAACGGCACCACCTATCTCGCACCTCTTTTTTGCAGATGATAGTTTACTTTTTCTCAAAGCGCGAAAGGAGGAATTCGATGAGATGCAACGAATCGTGAAAGTATATGAAGCAGCCACAGGACAGATCGTTAATTTTGATAAATCGGAGATAGCTTTTGGGGCCGGAGTGGCAAATGAAGCAAAAGGCTTTTTAGCCAACATTTTAAAAGTCAAGATAGTCCAAGACCATGGAAAGTATCTTGGATGTCCGTCTTCCCTATCCAGAAATAAGAAAGCTTCTCTGAACTACATAACATCTAAAGTTCAGAATGTGTTGTAG
Coding sequence (CDS)
ATGGCTAAGATAGGTTTTAGCTCAGCTTGGATAAAGAAGATTGGCATGTGTGTGGAATCTGTATCCTTTTCGATCCTTATTAATGGTAGTTGTTATGAATCTTTTAAGCCCTCACGAGGGCTTAGACAGGGCGATCCGTTATCTCCTTATTTATTTCTCATGTGTGATGAGGGACTATCTAGCCTCCTAAAAAAGGCCGATATATCTCAAAATATTTCAGGTCTTAGAATTGCAAAAACGGCACCACCTATCTCGCACCTCTTTTTTGCAGATGATAGTTTACTTTTTCTCAAAGCGCGAAAGGAGGAATTCGATGAGATGCAACGAATCGTGAAAGTATATGAAGCAGCCACAGGACAGATCGTTAATTTTGATAAATCGGAGATAGCTTTTGGGGCCGGAGTGGCAAATGAAGCAAAAGGCTTTTTAGCCAACATTTTAAAAGTCAAGATAGTCCAAGACCATGGAAAGTATCTTGGATGTCCGTCTTCCCTATCCAGAAATAAGAAAGCTTCTCTGAACTACATAACATCTAAAGTTCAGAATGTGTTGTAG
Protein sequence
MAKIGFSSAWIKKIGMCVESVSFSILINGSCYESFKPSRGLRQGDPLSPYLFLMCDEGLSSLLKKADISQNISGLRIAKTAPPISHLFFADDSLLFLKARKEEFDEMQRIVKVYEAATGQIVNFDKSEIAFGAGVANEAKGFLANILKVKIVQDHGKYLGCPSSLSRNKKASLNYITSKVQNVL
Homology
BLAST of Lag0015990 vs. NCBI nr
Match:
XP_019170410.1 (PREDICTED: uncharacterized protein LOC109165884 [Ipomoea nil])
HSP 1 Score: 188.3 bits (477), Expect = 5.7e-44
Identity = 89/178 (50.00%), Postives = 123/178 (69.10%), Query Frame = 0
Query: 4 IGFSSAWIKKIGMCVESVSFSILINGSCYESFKPSRGLRQGDPLSPYLFLMCDEGLSSLL 63
+GF W+K + MCV +VS+S+LINGS E P+RGLRQGDPLSPYLF++C EGLS LL
Sbjct: 358 LGFDDRWVKFLMMCVSTVSYSVLINGSKSEQITPTRGLRQGDPLSPYLFIICAEGLSILL 417
Query: 64 KKADISQNISGLRIAKTAPPISHLFFADDSLLFLKARKEEFDEMQRIVKVYEAATGQIVN 123
K+A++ +I G R+A+ AP I+HLFFADDSLLF KA +E ++R + YE +GQ VN
Sbjct: 418 KQAEVKGDIHGCRVARGAPSITHLFFADDSLLFFKANNQEAGAIKRCLTTYETMSGQAVN 477
Query: 124 FDKSEIAFGAGVANEAKGFLANILKVKIVQDHGKYLGCPSSLSRNKKASLNYITSKVQ 182
+ KS I F + E + + +IL V Q+ GKYLG PS + RN++ + +YI K++
Sbjct: 478 YHKSNICFSKNTSEEVREEIVDILGVVRAQNFGKYLGLPSFVGRNRRQAFSYIEDKIK 535
BLAST of Lag0015990 vs. NCBI nr
Match:
XP_019198168.1 (PREDICTED: uncharacterized protein LOC109191994 [Ipomoea nil])
HSP 1 Score: 187.6 bits (475), Expect = 9.8e-44
Identity = 92/181 (50.83%), Postives = 124/181 (68.51%), Query Frame = 0
Query: 1 MAKIGFSSAWIKKIGMCVESVSFSILINGSCYESFKPSRGLRQGDPLSPYLFLMCDEGLS 60
M +GF W++ I CV +VS+++L+NGS E P+RGLRQGDPLSPYLF++C EGLS
Sbjct: 526 MLALGFDVGWVQLIMNCVSTVSYNLLVNGSRSEPILPTRGLRQGDPLSPYLFIICAEGLS 585
Query: 61 SLLKKADISQNISGLRIAKTAPPISHLFFADDSLLFLKARKEEFDEMQRIVKVYEAATGQ 120
LL++A I G R+A+ APPISHLFFADDSLLF KA +E E++R + VYE +GQ
Sbjct: 586 LLLQQAHNRGLIHGCRVARGAPPISHLFFADDSLLFFKANVQEASEIKRCLSVYEDLSGQ 645
Query: 121 IVNFDKSEIAFGAGVANEAKGFLANILKVKIVQDHGKYLGCPSSLSRNKKASLNYITSKV 180
+VN+ KS I + +N +K +A +L V + GKYLG PS + RNKKA+ YI K+
Sbjct: 646 VVNYHKSSICYSRNTSNASKEVVAQVLGVGQAPNFGKYLGLPSFVGRNKKAAFAYIEDKI 705
Query: 181 Q 182
+
Sbjct: 706 R 706
BLAST of Lag0015990 vs. NCBI nr
Match:
XP_019169907.1 (PREDICTED: uncharacterized protein LOC109165547 [Ipomoea nil])
HSP 1 Score: 186.0 bits (471), Expect = 2.8e-43
Identity = 91/181 (50.28%), Postives = 124/181 (68.51%), Query Frame = 0
Query: 1 MAKIGFSSAWIKKIGMCVESVSFSILINGSCYESFKPSRGLRQGDPLSPYLFLMCDEGLS 60
M +GF W++ I CV +VS+++L+NGS E P+RGLRQGDPLSPYLF++C EGLS
Sbjct: 301 MLALGFDVGWVQLIMNCVSTVSYNLLVNGSRSEPILPTRGLRQGDPLSPYLFIICAEGLS 360
Query: 61 SLLKKADISQNISGLRIAKTAPPISHLFFADDSLLFLKARKEEFDEMQRIVKVYEAATGQ 120
LL++A I G R+A+ APPISHLFFADDSLLF KA +E E++R + VYE +G+
Sbjct: 361 LLLQQAHNRGLIHGCRVARGAPPISHLFFADDSLLFFKANVQEASEIKRCLSVYEDLSGK 420
Query: 121 IVNFDKSEIAFGAGVANEAKGFLANILKVKIVQDHGKYLGCPSSLSRNKKASLNYITSKV 180
+VN+ KS I + +N +K +A +L V + GKYLG PS + RNKKA+ YI K+
Sbjct: 421 VVNYHKSSICYSRNTSNASKEVVAQVLGVGQAPNFGKYLGLPSFVGRNKKAAFAYIEDKI 480
Query: 181 Q 182
+
Sbjct: 481 R 481
BLAST of Lag0015990 vs. NCBI nr
Match:
XP_019184158.1 (PREDICTED: uncharacterized protein LOC109179042 [Ipomoea nil])
HSP 1 Score: 186.0 bits (471), Expect = 2.8e-43
Identity = 93/181 (51.38%), Postives = 119/181 (65.75%), Query Frame = 0
Query: 1 MAKIGFSSAWIKKIGMCVESVSFSILINGSCYESFKPSRGLRQGDPLSPYLFLMCDEGLS 60
+ ++GF W++ + +CV SV + +LING E P+RGLRQGDPLSPYLF++C EGLS
Sbjct: 77 LRRLGFDDRWVQLVMLCVRSVRYKVLINGRPSEEIVPTRGLRQGDPLSPYLFIICAEGLS 136
Query: 61 SLLKKADISQNISGLRIAKTAPPISHLFFADDSLLFLKARKEEFDEMQRIVKVYEAATGQ 120
LL+ + I G R+A+ AP ISHLFFADDSLLF KA +E E++R + VYEA +GQ
Sbjct: 137 LLLQDSQTRGLIHGCRVARGAPSISHLFFADDSLLFFKANLQETMEVKRCLGVYEAYSGQ 196
Query: 121 IVNFDKSEIAFGAGVANEAKGFLANILKVKIVQDHGKYLGCPSSLSRNKKASLNYITSKV 180
VNF+KS I+F NE K LA L V D GKYLG PS + RNKK YI K+
Sbjct: 197 AVNFNKSSISFSRNTRNEVKDLLAGALGVAQADDFGKYLGLPSVIGRNKKLVFAYIEQKM 256
Query: 181 Q 182
+
Sbjct: 257 K 257
BLAST of Lag0015990 vs. NCBI nr
Match:
XP_019175839.1 (PREDICTED: uncharacterized protein LOC109171159 [Ipomoea nil])
HSP 1 Score: 186.0 bits (471), Expect = 2.8e-43
Identity = 88/178 (49.44%), Postives = 122/178 (68.54%), Query Frame = 0
Query: 4 IGFSSAWIKKIGMCVESVSFSILINGSCYESFKPSRGLRQGDPLSPYLFLMCDEGLSSLL 63
+GF W+K + MCV +VS+S+LINGS E P+RGLRQGDPLSPYLF++C EGLS LL
Sbjct: 509 LGFDGRWVKLLMMCVSTVSYSVLINGSKTEQITPTRGLRQGDPLSPYLFIICAEGLSILL 568
Query: 64 KKADISQNISGLRIAKTAPPISHLFFADDSLLFLKARKEEFDEMQRIVKVYEAATGQIVN 123
K+A++ +I G R+A+ AP I+HLFFA DSLLF KA +E ++R + YE +GQ VN
Sbjct: 569 KQAEVKGDIHGCRVARAAPSITHLFFAGDSLLFFKANNQEAGAIKRCLTTYETMSGQAVN 628
Query: 124 FDKSEIAFGAGVANEAKGFLANILKVKIVQDHGKYLGCPSSLSRNKKASLNYITSKVQ 182
+ KS I F + E + +A+IL V Q+ GKYLG P + RN++ + +YI K++
Sbjct: 629 YHKSNICFSKNTSEEVREEIADILGVVQAQNFGKYLGLPFFVGRNRRQAFSYIEDKIK 686
BLAST of Lag0015990 vs. ExPASy Swiss-Prot
Match:
P92555 (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 GN=AtMg01250 PE=4 SV=1)
HSP 1 Score: 80.1 bits (196), Expect = 2.9e-14
Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = 0
Query: 26 LINGSCYESFKPSRGLRQGDPLSPYLFLMCDEGLSSLLKKADISQNISGLRIAKTAPPIS 85
+ING+ PSRGLRQGDPLSPYLF++C E LS L ++A + G+R++ +P I+
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRIN 72
Query: 86 HLFFADDS 94
HL FADD+
Sbjct: 73 HLLFADDT 80
BLAST of Lag0015990 vs. ExPASy Swiss-Prot
Match:
P11369 (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2)
HSP 1 Score: 59.3 bits (142), Expect = 5.3e-08
Identity = 44/160 (27.50%), Postives = 75/160 (46.88%), Query Frame = 0
Query: 1 MAKIGFSSAWIKKIGMCVESVSFSILINGSCYESFKPSRGLRQGDPLSPYLFLMCDEGLS 60
+ + G ++ I +I +NG E+ G RQG PLSPYLF + E L+
Sbjct: 624 LERSGIQGPYLNMIKAIYSKPVANIKVNGEKLEAIPLKSGTRQGCPLSPYLFNIVLEVLA 683
Query: 61 SLLKKADISQNISGLRIAKTAPPISHLFFADDSLLFLKARKEEFDEMQRIVKVYEAATGQ 120
+++ + I G++I K IS L ADD ++++ K E+ ++ + G
Sbjct: 684 RAIRQ---QKEIKGIQIGKEEVKISLL--ADDMIVYISDPKNSTRELLNLINSFGEVVGY 743
Query: 121 IVNFDKSEIAFGAGVANEAKGFLANILKVKIVQDHGKYLG 161
+N +KS +AF +A+ + IV ++ KYLG
Sbjct: 744 KINSNKS-MAFLYTKNKQAEKEIRETTPFSIVTNNIKYLG 777
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_019170410.1 | 5.7e-44 | 50.00 | PREDICTED: uncharacterized protein LOC109165884 [Ipomoea nil] | [more] |
XP_019198168.1 | 9.8e-44 | 50.83 | PREDICTED: uncharacterized protein LOC109191994 [Ipomoea nil] | [more] |
XP_019169907.1 | 2.8e-43 | 50.28 | PREDICTED: uncharacterized protein LOC109165547 [Ipomoea nil] | [more] |
XP_019184158.1 | 2.8e-43 | 51.38 | PREDICTED: uncharacterized protein LOC109179042 [Ipomoea nil] | [more] |
XP_019175839.1 | 2.8e-43 | 49.44 | PREDICTED: uncharacterized protein LOC109171159 [Ipomoea nil] | [more] |
Match Name | E-value | Identity | Description | |
P92555 | 2.9e-14 | 51.47 | Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 ... | [more] |
P11369 | 5.3e-08 | 27.50 | LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE... | [more] |