![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
Lag0015990.1 (mRNA) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTAAGATAGGTTTTAGCTCAGCTTGGATAAAGAAGATTGGCATGTGTGTGGAATCTGTATCCTTTTCGATCCTTATTAATGGTAGTTGTTATGAATCTTTTAAGCCCTCACGAGGGCTTAGACAGGGCGATCCGTTATCTCCTTATTTATTTCTCATGTGTGATGAGGGACTATCTAGCCTCCTAAAAAAGGCCGATATATCTCAAAATATTTCAGGTCTTAGAATTGCAAAAACGGCACCACCTATCTCGCACCTCTTTTTTGCAGATGATAGTTTACTTTTTCTCAAAGCGCGAAAGGAGGAATTCGATGAGATGCAACGAATCGTGAAAGTATATGAAGCAGCCACAGGACAGATCGTTAATTTTGATAAATCGGAGATAGCTTTTGGGGCCGGAGTGGCAAATGAAGCAAAAGGCTTTTTAGCCAACATTTTAAAAGTCAAGATAGTCCAAGACCATGGAAAGTATCTTGGATGTCCGTCTTCCCTATCCAGAAATAAGAAAGCTTCTCTGAACTACATAACATCTAAAGTTCAGAATGTGTTGTAG ATGGCTAAGATAGGTTTTAGCTCAGCTTGGATAAAGAAGATTGGCATGTGTGTGGAATCTGTATCCTTTTCGATCCTTATTAATGGTAGTTGTTATGAATCTTTTAAGCCCTCACGAGGGCTTAGACAGGGCGATCCGTTATCTCCTTATTTATTTCTCATGTGTGATGAGGGACTATCTAGCCTCCTAAAAAAGGCCGATATATCTCAAAATATTTCAGGTCTTAGAATTGCAAAAACGGCACCACCTATCTCGCACCTCTTTTTTGCAGATGATAGTTTACTTTTTCTCAAAGCGCGAAAGGAGGAATTCGATGAGATGCAACGAATCGTGAAAGTATATGAAGCAGCCACAGGACAGATCGTTAATTTTGATAAATCGGAGATAGCTTTTGGGGCCGGAGTGGCAAATGAAGCAAAAGGCTTTTTAGCCAACATTTTAAAAGTCAAGATAGTCCAAGACCATGGAAAGTATCTTGGATGTCCGTCTTCCCTATCCAGAAATAAGAAAGCTTCTCTGAACTACATAACATCTAAAGTTCAGAATGTGTTGTAG ATGGCTAAGATAGGTTTTAGCTCAGCTTGGATAAAGAAGATTGGCATGTGTGTGGAATCTGTATCCTTTTCGATCCTTATTAATGGTAGTTGTTATGAATCTTTTAAGCCCTCACGAGGGCTTAGACAGGGCGATCCGTTATCTCCTTATTTATTTCTCATGTGTGATGAGGGACTATCTAGCCTCCTAAAAAAGGCCGATATATCTCAAAATATTTCAGGTCTTAGAATTGCAAAAACGGCACCACCTATCTCGCACCTCTTTTTTGCAGATGATAGTTTACTTTTTCTCAAAGCGCGAAAGGAGGAATTCGATGAGATGCAACGAATCGTGAAAGTATATGAAGCAGCCACAGGACAGATCGTTAATTTTGATAAATCGGAGATAGCTTTTGGGGCCGGAGTGGCAAATGAAGCAAAAGGCTTTTTAGCCAACATTTTAAAAGTCAAGATAGTCCAAGACCATGGAAAGTATCTTGGATGTCCGTCTTCCCTATCCAGAAATAAGAAAGCTTCTCTGAACTACATAACATCTAAAGTTCAGAATGTGTTGTAG MAKIGFSSAWIKKIGMCVESVSFSILINGSCYESFKPSRGLRQGDPLSPYLFLMCDEGLSSLLKKADISQNISGLRIAKTAPPISHLFFADDSLLFLKARKEEFDEMQRIVKVYEAATGQIVNFDKSEIAFGAGVANEAKGFLANILKVKIVQDHGKYLGCPSSLSRNKKASLNYITSKVQNVL Homology
BLAST of Lag0015990.1 vs. NCBI nr
Match: XP_019170410.1 (PREDICTED: uncharacterized protein LOC109165884 [Ipomoea nil]) HSP 1 Score: 188.3 bits (477), Expect = 5.7e-44 Identity = 89/178 (50.00%), Postives = 123/178 (69.10%), Query Frame = 0
BLAST of Lag0015990.1 vs. NCBI nr
Match: XP_019198168.1 (PREDICTED: uncharacterized protein LOC109191994 [Ipomoea nil]) HSP 1 Score: 187.6 bits (475), Expect = 9.8e-44 Identity = 92/181 (50.83%), Postives = 124/181 (68.51%), Query Frame = 0
BLAST of Lag0015990.1 vs. NCBI nr
Match: XP_019169907.1 (PREDICTED: uncharacterized protein LOC109165547 [Ipomoea nil]) HSP 1 Score: 186.0 bits (471), Expect = 2.8e-43 Identity = 91/181 (50.28%), Postives = 124/181 (68.51%), Query Frame = 0
BLAST of Lag0015990.1 vs. NCBI nr
Match: XP_019184158.1 (PREDICTED: uncharacterized protein LOC109179042 [Ipomoea nil]) HSP 1 Score: 186.0 bits (471), Expect = 2.8e-43 Identity = 93/181 (51.38%), Postives = 119/181 (65.75%), Query Frame = 0
BLAST of Lag0015990.1 vs. NCBI nr
Match: XP_019175839.1 (PREDICTED: uncharacterized protein LOC109171159 [Ipomoea nil]) HSP 1 Score: 186.0 bits (471), Expect = 2.8e-43 Identity = 88/178 (49.44%), Postives = 122/178 (68.54%), Query Frame = 0
BLAST of Lag0015990.1 vs. ExPASy Swiss-Prot
Match: P92555 (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 GN=AtMg01250 PE=4 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 2.9e-14 Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = 0
BLAST of Lag0015990.1 vs. ExPASy Swiss-Prot
Match: P11369 (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2) HSP 1 Score: 59.3 bits (142), Expect = 5.3e-08 Identity = 44/160 (27.50%), Postives = 75/160 (46.88%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
|