Lag0006098 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0006098
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionNADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial
Locationchr6: 37276944 .. 37277889 (-)
RNA-Seq ExpressionLag0006098
SyntenyLag0006098
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCCCCCGCCGTTCAGCCCCGTTTTCTTCGCCGCGCAGCCTCTCACGCCCCCCGTTTTCTTCTTCGTGCAGGTAACACGAGAAGACGCACGCCCCCCGTTTTCTTCTTCGCCTAGGCAACAGGAGTTGTCTCTCCACGCGTCATGCGACCAACCACTGCAAACGTCATCGCCACGCGAATTCCAGCCCTCCAACGAAGCGTTTCGGCTTTTTTTTTTTTTTTTGTTAAGTTTAGCCTCGACCCACTTGATTTCTTCATTTTTCAGCTTATGCCCATGTATTTTGATTTATGTCAGGTTGTAATTTACTCACTTGCTAGAACTGCATCTCAGCAAGGATGAGGGAAGGTTGGCAAGTGGAAAATAAATTTTATGCCAACAAAAAAGTATGAATTGTTCTTTTCTTTCTTCGTTCTCTGAGTTTGTTTTTCTAAAAAATCGGAGTTGCTCCATAAGTTAACAGAATTTTTAACTCAGTTCTAGCAGATTCCTAGGTGCTAGAGTGAAATATTGTGCACAATATGTTATATTGGACAAACTTCAAGTGCACAAAAGTGAATGACTTGTTCTCTTACTCTCAACAATTAGAGTTTTTCCCCTTAATATCTTTTTCTCTTTTTGGACTTTTGTTTCTCTGATCAGGCATCTTATGTGGTGGATTGATTTCTTTCTTTATTGCCCGCGTGTAATATTTCATTTATTTTCATAAAAGTTTGATTTTTCATTTAAAACTGAAAAACATACAAACAGAGGGGTAAAGAGTTTTTTAATGCTTATCGACATGTTTGTAGGTGGGAAAATCCATTGATGGGGTGGACTTCTACTGGGGACCCTTATGCCAATGTAGGGGATTCTACACTGTCTTTTGATAGTGAAGAAGCTGCAAAGGCATTTGCTGAGAAACATGGATGGGAATATGTGGTAATGCTTCGTTCAACCATTTAG

mRNA sequence

ATGCCCCCCCGCCGTTCAGCCCCGTTTTCTTCGCCGCGCAGCCTCTCACGCCCCCCGTTTTCTTCTTCGTGCAGGTGGGAAAATCCATTGATGGGGTGGACTTCTACTGGGGACCCTTATGCCAATGTAGGGGATTCTACACTGTCTTTTGATAGTGAAGAAGCTGCAAAGGCATTTGCTGAGAAACATGGATGGGAATATGTGGTAATGCTTCGTTCAACCATTTAG

Coding sequence (CDS)

ATGCCCCCCCGCCGTTCAGCCCCGTTTTCTTCGCCGCGCAGCCTCTCACGCCCCCCGTTTTCTTCTTCGTGCAGGTGGGAAAATCCATTGATGGGGTGGACTTCTACTGGGGACCCTTATGCCAATGTAGGGGATTCTACACTGTCTTTTGATAGTGAAGAAGCTGCAAAGGCATTTGCTGAGAAACATGGATGGGAATATGTGGTAATGCTTCGTTCAACCATTTAG

Protein sequence

MPPRRSAPFSSPRSLSRPPFSSSCRWENPLMGWTSTGDPYANVGDSTLSFDSEEAAKAFAEKHGWEYVVMLRSTI
Homology
BLAST of Lag0006098 vs. NCBI nr
Match: XP_038881462.1 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial [Benincasa hispida])

HSP 1 Score: 103.6 bits (257), Expect = 7.6e-19
Identity = 47/55 (85.45%), Postives = 49/55 (89.09%), Query Frame = 0

Query: 20  FSSSCRWENPLMGWTSTGDPYANVGDSTLSFDSEEAAKAFAEKHGWEYVVMLRST 75
           F S+ +WENPLMGWTSTGDPYANVGDS LSFDSEEAAKAFAEKHGWEYVV  R T
Sbjct: 78  FMSTQKWENPLMGWTSTGDPYANVGDSALSFDSEEAAKAFAEKHGWEYVVQKRHT 132

BLAST of Lag0006098 vs. NCBI nr
Match: XP_022962977.1 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial-like [Cucurbita moschata] >XP_022962978.1 NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial-like [Cucurbita moschata] >XP_023003205.1 NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial-like [Cucurbita maxima] >XP_023517797.1 NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial-like [Cucurbita pepo subsp. pepo] >KAG6594972.1 NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 103.2 bits (256), Expect = 9.9e-19
Identity = 47/55 (85.45%), Postives = 49/55 (89.09%), Query Frame = 0

Query: 20  FSSSCRWENPLMGWTSTGDPYANVGDSTLSFDSEEAAKAFAEKHGWEYVVMLRST 75
           F S+ +WENPLMGWTSTGDPYANVGDS LSFDSEEAAKAFAEKHGWEYVV  R T
Sbjct: 78  FMSTQKWENPLMGWTSTGDPYANVGDSALSFDSEEAAKAFAEKHGWEYVVKKRHT 132

BLAST of Lag0006098 vs. NCBI nr
Match: KAG7026931.1 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 103.2 bits (256), Expect = 9.9e-19
Identity = 47/55 (85.45%), Postives = 49/55 (89.09%), Query Frame = 0

Query: 20  FSSSCRWENPLMGWTSTGDPYANVGDSTLSFDSEEAAKAFAEKHGWEYVVMLRST 75
           F S+ +WENPLMGWTSTGDPYANVGDS LSFDSEEAAKAFAEKHGWEYVV  R T
Sbjct: 78  FMSTQKWENPLMGWTSTGDPYANVGDSALSFDSEEAAKAFAEKHGWEYVVKKRHT 132

BLAST of Lag0006098 vs. NCBI nr
Match: XP_008440406.1 (PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial [Cucumis melo] >KAA0036408.1 NADH dehydrogenase (ubiquinone) iron-sulfur protein 4 [Cucumis melo var. makuwa] >TYK12804.1 NADH dehydrogenase (ubiquinone) iron-sulfur protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 102.8 bits (255), Expect = 1.3e-18
Identity = 47/55 (85.45%), Postives = 49/55 (89.09%), Query Frame = 0

Query: 20  FSSSCRWENPLMGWTSTGDPYANVGDSTLSFDSEEAAKAFAEKHGWEYVVMLRST 75
           F S+ +WENPLMGWTSTGDPYANVGDS LSFDSEEAAKAFAEKHGWEYVV  R T
Sbjct: 78  FVSTQKWENPLMGWTSTGDPYANVGDSALSFDSEEAAKAFAEKHGWEYVVKKRHT 132

BLAST of Lag0006098 vs. NCBI nr
Match: XP_004141860.1 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial [Cucumis sativus] >KGN48618.1 hypothetical protein Csa_004287 [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 1.3e-18
Identity = 47/55 (85.45%), Postives = 49/55 (89.09%), Query Frame = 0

Query: 20  FSSSCRWENPLMGWTSTGDPYANVGDSTLSFDSEEAAKAFAEKHGWEYVVMLRST 75
           F S+ +WENPLMGWTSTGDPYANVGDS LSFDSEEAAKAFAEKHGWEYVV  R T
Sbjct: 78  FVSTQKWENPLMGWTSTGDPYANVGDSALSFDSEEAAKAFAEKHGWEYVVKKRHT 132

BLAST of Lag0006098 vs. ExPASy Swiss-Prot
Match: Q9FJW4 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=FRO1 PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.3e-18
Identity = 46/74 (62.16%), Postives = 55/74 (74.32%), Query Frame = 0

Query: 3   PRRSAPFSSPRSLS--RPPFSSSCRWENPLMGWTSTGDPYANVGDSTLSFDSEEAAKAFA 62
           P R+A  S    L   +  F S+ +WENPLMGWTSTGDPYANVGDS L+FDSEEAAK+FA
Sbjct: 59  PARTATQSGSGKLGKWKINFVSTLKWENPLMGWTSTGDPYANVGDSALAFDSEEAAKSFA 118

Query: 63  EKHGWEYVVMLRST 75
           E+HGW+Y V   +T
Sbjct: 119 ERHGWDYKVKKPNT 132

BLAST of Lag0006098 vs. ExPASy Swiss-Prot
Match: Q5XIF3 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Rattus norvegicus OX=10116 GN=Ndufs4 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-09
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 0

Query: 20  FSSSCRWENPLMGWTSTGDPYANVGDSTLSFDSEEAAKAFAEKHGWEYVV 70
           F +  RWENPLMGW ST DP +N+    L+F ++E A AFAEKHGW Y V
Sbjct: 101 FDTRERWENPLMGWASTADPLSNM---VLTFSAKEDAVAFAEKHGWSYDV 147

BLAST of Lag0006098 vs. ExPASy Swiss-Prot
Match: Q02375 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Bos taurus OX=9913 GN=NDUFS4 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 9.6e-09
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 0

Query: 20  FSSSCRWENPLMGWTSTGDPYANVGDSTLSFDSEEAAKAFAEKHGWEYVV 70
           F +  RWENPLMGW ST DP +N+    L+F ++E A AFAEK+GW Y V
Sbjct: 101 FDTRERWENPLMGWASTADPLSNL---VLTFSTKEDAVAFAEKNGWSYDV 147

BLAST of Lag0006098 vs. ExPASy Swiss-Prot
Match: Q9CXZ1 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Mus musculus OX=10090 GN=Ndufs4 PE=1 SV=3)

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-08
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 0

Query: 20  FSSSCRWENPLMGWTSTGDPYANVGDSTLSFDSEEAAKAFAEKHGWEYVV 70
           F +  RWENPLMGW ST DP +N+    L+F ++E A AFAEK+GW Y V
Sbjct: 101 FDTRERWENPLMGWASTADPLSNM---VLTFSAKEDAIAFAEKNGWSYDV 147

BLAST of Lag0006098 vs. ExPASy Swiss-Prot
Match: Q66XS7 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Gekko japonicus OX=146911 GN=NDUFS4 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.1e-08
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 0

Query: 20  FSSSCRWENPLMGWTSTGDPYANVGDSTLSFDSEEAAKAFAEKHGWEYVV 70
           F +  RWENPLMGW+ST DP +N+    L+F ++E A AFAEK+GW + V
Sbjct: 101 FDTRERWENPLMGWSSTADPLSNL---VLTFSTKEDAVAFAEKNGWSFDV 147

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038881462.17.6e-1985.45NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial [Benincasa ... [more]
XP_022962977.19.9e-1985.45NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial-like [Cucur... [more]
KAG7026931.19.9e-1985.45NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial [Cucurbita ... [more]
XP_008440406.11.3e-1885.45PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial ... [more]
XP_004141860.11.3e-1885.45NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial [Cucumis sa... [more]
Match NameE-valueIdentityDescription
Q9FJW42.3e-1862.16NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Arabidop... [more]
Q5XIF31.5e-0958.00NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Rattus n... [more]
Q023759.6e-0956.00NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Bos taur... [more]
Q9CXZ11.3e-0856.00NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Mus musc... [more]
Q66XS72.1e-0854.00NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Gekko ja... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006885NADH dehydrogenase ubiquinone Fe-S protein 4, mitochondrialPFAMPF04800ETC_C1_NDUFA4coord: 23..70
e-value: 1.4E-16
score: 60.5
IPR006885NADH dehydrogenase ubiquinone Fe-S protein 4, mitochondrialPANTHERPTHR12219NADH-UBIQUINONE OXIDOREDUCTASEcoord: 20..70
IPR038532NADH dehydrogenase ubiquinone Fe-S protein 4-like superfamilyGENE3D3.30.160.190atu1810 like domaincoord: 15..70
e-value: 1.6E-20
score: 74.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availablePANTHERPTHR12219:SF25NADH DEHYDROGENASE UBIQUINONE FE-S PROTEIN-RELATEDcoord: 20..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0006098.1Lag0006098.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022900 electron transport chain
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0070469 respirasome
molecular_function GO:0016651 oxidoreductase activity, acting on NAD(P)H