Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCTTAAGTTCTAAGGATGAAGGTGTTGTGGGGGTAGACTCTTTAATGCTAGATTGTTTAGTTGATGATGTTAAAATATCTTTTGACTCATATCGGTCTCTTGGGTTTGAAGTAGTACTTGGTGGTGGACAAGATGCTTCAGCAGTAATAACTGATCATCGGGTCGGAAAGTTTGAAGCTAAATTCTATCACAAGGTGTAGTGTTCTTCCTAATGACCTTATAATTGAAGTTGAGTTAATTTAGTTTTTTGACATTTTTGTTTTGTGTAATAGATCCTTCAAGTAGATATTGGAGGTGTAAACGACCATTTTTTACCCATTAATGCTCTGGCTTTCAATCCTGATGGCAAGAGGTATGTTTATGGTTTATTGCATTGTTTGCATATGAAAAAAAGCAAACAACACAATCAAAGAAACCATAGTATTGGATGGTGATTGAGATTCTTCATAGATATGGTTTTGTTGTAGTTTTTCAATTAGAGGTGAGTTGGATTATGAAGGTAATTACGATGATTAA
mRNA sequence
ATGCCCTTAAGTTCTAAGGATGAAGGTGTTGTGGGGGTAGACTCTTTAATGCTAGATTGTTTAGTTGATGATGTTAAAATATCTTTTGACTCATATCGGTCTCTTGGGTTTGAAGTAGTACTTGGTGGTGGACAAGATGCTTCAGCAGTAATAACTGATCATCGGGTCGGAAAGTTTGAAGCTAAATTCTATCACAAGATCCTTCAAGTAGATATTGGAGGTGTAAACGACCATTTTTTACCCATTAATGCTCTGGCTTTCAATCCTGATGGCAAGAGTTTTTCAATTAGAGGTGAGTTGGATTATGAAGGTAATTACGATGATTAA
Coding sequence (CDS)
ATGCCCTTAAGTTCTAAGGATGAAGGTGTTGTGGGGGTAGACTCTTTAATGCTAGATTGTTTAGTTGATGATGTTAAAATATCTTTTGACTCATATCGGTCTCTTGGGTTTGAAGTAGTACTTGGTGGTGGACAAGATGCTTCAGCAGTAATAACTGATCATCGGGTCGGAAAGTTTGAAGCTAAATTCTATCACAAGATCCTTCAAGTAGATATTGGAGGTGTAAACGACCATTTTTTACCCATTAATGCTCTGGCTTTCAATCCTGATGGCAAGAGTTTTTCAATTAGAGGTGAGTTGGATTATGAAGGTAATTACGATGATTAA
Protein sequence
MPLSSKDEGVVGVDSLMLDCLVDDVKISFDSYRSLGFEVVLGGGQDASAVITDHRVGKFEAKFYHKILQVDIGGVNDHFLPINALAFNPDGKSFSIRGELDYEGNYDD
Homology
BLAST of Lag0005423 vs. NCBI nr
Match:
KZV44849.1 (eukaryotic translation initiation factor 3 subunit I [Dorcoceras hygrometricum])
HSP 1 Score: 105.1 bits (261), Expect = 3.7e-19
Identity = 53/65 (81.54%), Postives = 54/65 (83.08%), Query Frame = 0
Query: 39 VVLGGGQDASAV-ITDHRVGKFEAKFYHKILQVDIGGVNDHFLPINALAFNPDGKSFSIR 98
VVLGGGQDASAV TDHR GKFEAKFYHKILQ +IGGV HF PINALAFNPDGKSFS
Sbjct: 247 VVLGGGQDASAVTTTDHRAGKFEAKFYHKILQEEIGGVKGHFGPINALAFNPDGKSFSSG 306
Query: 99 GELDY 103
GE Y
Sbjct: 307 GEDGY 311
BLAST of Lag0005423 vs. NCBI nr
Match:
KZV57115.1 (eukaryotic translation initiation factor 3 subunit I [Dorcoceras hygrometricum])
HSP 1 Score: 105.1 bits (261), Expect = 3.7e-19
Identity = 53/65 (81.54%), Postives = 54/65 (83.08%), Query Frame = 0
Query: 39 VVLGGGQDASAV-ITDHRVGKFEAKFYHKILQVDIGGVNDHFLPINALAFNPDGKSFSIR 98
VVLGGGQDASAV TDHR GKFEAKFYHKILQ +IGGV HF PINALAFNPDGKSFS
Sbjct: 247 VVLGGGQDASAVTTTDHRAGKFEAKFYHKILQEEIGGVKGHFGPINALAFNPDGKSFSSG 306
Query: 99 GELDY 103
GE Y
Sbjct: 307 GEDGY 311
BLAST of Lag0005423 vs. NCBI nr
Match:
CAF2143618.1 (unnamed protein product [Brassica napus])
HSP 1 Score: 104.4 bits (259), Expect = 6.4e-19
Identity = 57/87 (65.52%), Postives = 61/87 (70.11%), Query Frame = 0
Query: 17 MLDCLVDDVKISFDSYRSLGFEVVLGGGQDASAV-ITDHRVGKFEAKFYHKILQVDIGGV 76
+L V V ++ S L VVLGGGQDASAV TDHR GKFEAKFY KILQ +IGGV
Sbjct: 513 LLKTYVSGVPVNAVSMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGV 572
Query: 77 NDHFLPINALAFNPDGKSFSIRGELDY 103
HF PINALAFNPDGKSFS GE Y
Sbjct: 573 KGHFGPINALAFNPDGKSFSSGGEDGY 599
BLAST of Lag0005423 vs. NCBI nr
Match:
KAF2597520.1 (hypothetical protein F2Q68_00011701 [Brassica cretica])
HSP 1 Score: 104.4 bits (259), Expect = 6.4e-19
Identity = 57/87 (65.52%), Postives = 61/87 (70.11%), Query Frame = 0
Query: 17 MLDCLVDDVKISFDSYRSLGFEVVLGGGQDASAV-ITDHRVGKFEAKFYHKILQVDIGGV 76
+L V V ++ S L VVLGGGQDASAV TDHR GKFEAKFY KILQ +IGGV
Sbjct: 229 LLKTYVSGVPVNAVSMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGV 288
Query: 77 NDHFLPINALAFNPDGKSFSIRGELDY 103
HF PINALAFNPDGKSFS GE Y
Sbjct: 289 KGHFGPINALAFNPDGKSFSSGGEDGY 315
BLAST of Lag0005423 vs. NCBI nr
Match:
CAG7895406.1 (unnamed protein product [Brassica rapa])
HSP 1 Score: 104.4 bits (259), Expect = 6.4e-19
Identity = 57/87 (65.52%), Postives = 61/87 (70.11%), Query Frame = 0
Query: 17 MLDCLVDDVKISFDSYRSLGFEVVLGGGQDASAV-ITDHRVGKFEAKFYHKILQVDIGGV 76
+L V V ++ S L VVLGGGQDASAV TDHR GKFEAKFY KILQ +IGGV
Sbjct: 512 LLKTYVSGVPVNAVSMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGV 571
Query: 77 NDHFLPINALAFNPDGKSFSIRGELDY 103
HF PINALAFNPDGKSFS GE Y
Sbjct: 572 KGHFGPINALAFNPDGKSFSSGGEDGY 598
BLAST of Lag0005423 vs. ExPASy Swiss-Prot
Match:
Q38884 (Eukaryotic translation initiation factor 3 subunit I OS=Arabidopsis thaliana OX=3702 GN=TIF3I1 PE=2 SV=2)
HSP 1 Score: 101.7 bits (252), Expect = 5.4e-21
Identity = 52/65 (80.00%), Postives = 53/65 (81.54%), Query Frame = 0
Query: 39 VVLGGGQDASAV-ITDHRVGKFEAKFYHKILQVDIGGVNDHFLPINALAFNPDGKSFSIR 98
VVLGGGQDASAV TDHR GKFEAKFY KILQ +IGGV HF PINALAFNPDGKSFS
Sbjct: 249 VVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGKSFSSG 308
Query: 99 GELDY 103
GE Y
Sbjct: 309 GEDGY 313
BLAST of Lag0005423 vs. ExPASy Swiss-Prot
Match:
Q759L2 (Eukaryotic translation initiation factor 3 subunit I OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=TIF34 PE=3 SV=1)
HSP 1 Score: 77.8 bits (190), Expect = 8.4e-14
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 0
Query: 39 VVLGGGQDASAV-ITDHRVGKFEAKFYHKILQVDIGGVNDHFLPINALAFNPDGKSFSIR 98
V+LGGGQDA V T R GKFEAKFYHK+ QV+IG V+DHF P+N +A +P G S++
Sbjct: 250 VILGGGQDARDVTTTSAREGKFEAKFYHKLFQVEIGRVDDHFGPVNYIAVSPQGTSYASG 309
Query: 99 GE 100
GE
Sbjct: 310 GE 311
BLAST of Lag0005423 vs. ExPASy Swiss-Prot
Match:
A7RM20 (Eukaryotic translation initiation factor 3 subunit I OS=Nematostella vectensis OX=45351 GN=v1g239264 PE=3 SV=1)
HSP 1 Score: 75.9 bits (185), Expect = 3.2e-13
Identity = 39/77 (50.65%), Postives = 53/77 (68.83%), Query Frame = 0
Query: 39 VVLGGGQDASAV-ITDHRVGKFEAKFYHKILQVDIGGVNDHFLPINALAFNPDGKSFSIR 98
VV+GGGQ+A V T RVGKF+A+F+H + + +IG V HF PIN+LAF+PDG+S+S
Sbjct: 240 VVVGGGQEAMEVTTTSTRVGKFDARFFHVVFEEEIGRVKGHFGPINSLAFHPDGRSYSSG 299
Query: 99 GELDY------EGNYDD 109
GE Y + +YDD
Sbjct: 300 GEDGYVRIHSFDPSYDD 316
BLAST of Lag0005423 vs. ExPASy Swiss-Prot
Match:
Q66J51 (Eukaryotic translation initiation factor 3 subunit I OS=Xenopus laevis OX=8355 GN=eif3i PE=2 SV=1)
HSP 1 Score: 75.5 bits (184), Expect = 4.2e-13
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 0
Query: 39 VVLGGGQDASAV-ITDHRVGKFEAKFYHKILQVDIGGVNDHFLPINALAFNPDGKSFSIR 98
VVLGGGQ+A V T R+GKFEA+F+H + + G V HF PIN+LAF+PDGKS+S
Sbjct: 244 VVLGGGQEAMDVTTTSTRIGKFEARFFHVAFEEEFGRVKGHFGPINSLAFHPDGKSYSSG 303
Query: 99 GELDY 103
GE Y
Sbjct: 304 GEDGY 308
BLAST of Lag0005423 vs. ExPASy Swiss-Prot
Match:
Q5EBE8 (Eukaryotic translation initiation factor 3 subunit I OS=Xenopus tropicalis OX=8364 GN=eif3i PE=2 SV=1)
HSP 1 Score: 75.5 bits (184), Expect = 4.2e-13
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 0
Query: 39 VVLGGGQDASAV-ITDHRVGKFEAKFYHKILQVDIGGVNDHFLPINALAFNPDGKSFSIR 98
VVLGGGQ+A V T R+GKFEA+F+H + + G V HF PIN+LAF+PDGKS+S
Sbjct: 244 VVLGGGQEAMDVTTTSTRIGKFEARFFHVAFEEEFGRVKGHFGPINSLAFHPDGKSYSSG 303
Query: 99 GELDY 103
GE Y
Sbjct: 304 GEDGY 308
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KZV44849.1 | 3.7e-19 | 81.54 | eukaryotic translation initiation factor 3 subunit I [Dorcoceras hygrometricum] | [more] |
KZV57115.1 | 3.7e-19 | 81.54 | eukaryotic translation initiation factor 3 subunit I [Dorcoceras hygrometricum] | [more] |
CAF2143618.1 | 6.4e-19 | 65.52 | unnamed protein product [Brassica napus] | [more] |
KAF2597520.1 | 6.4e-19 | 65.52 | hypothetical protein F2Q68_00011701 [Brassica cretica] | [more] |
CAG7895406.1 | 6.4e-19 | 65.52 | unnamed protein product [Brassica rapa] | [more] |
Match Name | E-value | Identity | Description | |
Q38884 | 5.4e-21 | 80.00 | Eukaryotic translation initiation factor 3 subunit I OS=Arabidopsis thaliana OX=... | [more] |
Q759L2 | 8.4e-14 | 59.68 | Eukaryotic translation initiation factor 3 subunit I OS=Ashbya gossypii (strain ... | [more] |
A7RM20 | 3.2e-13 | 50.65 | Eukaryotic translation initiation factor 3 subunit I OS=Nematostella vectensis O... | [more] |
Q66J51 | 4.2e-13 | 56.92 | Eukaryotic translation initiation factor 3 subunit I OS=Xenopus laevis OX=8355 G... | [more] |
Q5EBE8 | 4.2e-13 | 56.92 | Eukaryotic translation initiation factor 3 subunit I OS=Xenopus tropicalis OX=83... | [more] |