Lag0001382 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001382
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	cytochrome P450 78A5-like
Location	chr4: 30575896 .. 30576333 (-)
RNA-Seq Expression	Lag0001382
Synteny	Lag0001382

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATCCCACTAGGGCCGCTGCTGTCGTGGGCGAGGCTGGCGGTGGCAGACGTGCACGTCAAGGGGAGGTTGATTCCGGCAAGGACGATGGCGATTGTGAACTGTGGGCAATAACGCACGACAAGAGGGTATGGGCAGAGGCTGATAAGTTCGAGCCAAATCGATTCATGGAAGAGGAAGTGAGTGTGATGGGAAGCGATTTGAGAGGTCGATTGTGGAACGAATGGAGGTCGATAGTGGCGTACGACGACAAATCTGGAACGAAGGGAGGTCGATCTGGAACGAACGGCGACAGATCTGGAACGAAGGGAGGTCGATCGTGGCAGACGACGACAGAGGTAATGCGTGGGTCACGACGACAGCGAACTGAGAGGTCGCTCGTGGTGGTTTGCGACGTGCGTGGAAAGGCCCGAGGACAACGTGATTCGCTGGAGTGA

mRNA sequence

ATGCATCCCACTAGGGCCGCTGCTGTCGTGGGCGAGGCTGGCGGTGGCAGACGTGCACGTCAAGGGGAGGTTGATTCCGGCAAGGACGATGGCGATTGTGAACTGTGGGCAATAACGCACGACAAGAGGGTATGGGCAGAGGCTGATAAGTTCGAGCCAAATCGATTCATGGAAGAGGAAGTGAGTGTGATGGGAAGCGATTTGAGAGGTCGATTGTGGAACGAATGGAGGTCGATAGTGGCGTACGACGACAAATCTGGAACGAAGGGAGGTCGATCTGGAACGAACGGCGACAGATCTGGAACGAAGGGAGGTCGATCGTGGCAGACGACGACAGAGGTAATGCGTGGGTCACGACGACAGCGAACTGAGAGGTCGCTCGTGGTGGTTTGCGACGTGCGTGGAAAGGCCCGAGGACAACGTGATTCGCTGGAGTGA

Coding sequence (CDS)

ATGCATCCCACTAGGGCCGCTGCTGTCGTGGGCGAGGCTGGCGGTGGCAGACGTGCACGTCAAGGGGAGGTTGATTCCGGCAAGGACGATGGCGATTGTGAACTGTGGGCAATAACGCACGACAAGAGGGTATGGGCAGAGGCTGATAAGTTCGAGCCAAATCGATTCATGGAAGAGGAAGTGAGTGTGATGGGAAGCGATTTGAGAGGTCGATTGTGGAACGAATGGAGGTCGATAGTGGCGTACGACGACAAATCTGGAACGAAGGGAGGTCGATCTGGAACGAACGGCGACAGATCTGGAACGAAGGGAGGTCGATCGTGGCAGACGACGACAGAGGTAATGCGTGGGTCACGACGACAGCGAACTGAGAGGTCGCTCGTGGTGGTTTGCGACGTGCGTGGAAAGGCCCGAGGACAACGTGATTCGCTGGAGTGA

Protein sequence

MHPTRAAAVVGEAGGGRRARQGEVDSGKDDGDCELWAITHDKRVWAEADKFEPNRFMEEEVSVMGSDLRGRLWNEWRSIVAYDDKSGTKGGRSGTNGDRSGTKGGRSWQTTTEVMRGSRRQRTERSLVVVCDVRGKARGQRDSLE

Homology

[Close]

BLAST of Lag0001382 vs. NCBI nr
Match: XP_023002708.1 (cytochrome P450 78A5-like [Cucurbita maxima])

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-08
Identity = 29/35 (82.86%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 35  LWAITHDKRVWAEADKFEPNRFMEEEVSVMGSDLR 70
           +WAITH+++VW+EA+KFEPNRFMEEEVSVMGSDLR
Sbjct: 490 MWAITHNEKVWSEAEKFEPNRFMEEEVSVMGSDLR 524

[Close]

BLAST of Lag0001382 vs. NCBI nr
Match: XP_023537799.1 (cytochrome P450 78A5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 69.3 bits (168), Expect = 3.1e-08
Identity = 29/35 (82.86%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 35  LWAITHDKRVWAEADKFEPNRFMEEEVSVMGSDLR 70
           +WAITH+++VW EA+KFEPNRFMEEEVSVMGSDLR
Sbjct: 490 MWAITHNEKVWLEAEKFEPNRFMEEEVSVMGSDLR 524

[Close]

BLAST of Lag0001382 vs. NCBI nr
Match: XP_008445440.1 (PREDICTED: cytochrome P450 78A5 [Cucumis melo] >KAA0064774.1 cytochrome P450 78A5 [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 4.0e-08
Identity = 28/35 (80.00%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 35  LWAITHDKRVWAEADKFEPNRFMEEEVSVMGSDLR 70
           +WAITHD++VW +A+KF+PNRFMEEEVSVMGSDLR
Sbjct: 423 MWAITHDEKVWKDAEKFDPNRFMEEEVSVMGSDLR 457

[Close]

BLAST of Lag0001382 vs. NCBI nr
Match: XP_004144260.1 (cytochrome P450 78A5 [Cucumis sativus] >KGN47658.1 hypothetical protein Csa_018290 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 5.2e-08
Identity = 27/35 (77.14%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 35  LWAITHDKRVWAEADKFEPNRFMEEEVSVMGSDLR 70
           +WAITHD++VW +A+KF+PNRFMEEE+SVMGSDLR
Sbjct: 423 MWAITHDEKVWKDAEKFDPNRFMEEEISVMGSDLR 457

[Close]

BLAST of Lag0001382 vs. NCBI nr
Match: XP_022131979.1 (cytochrome P450 78A5 [Momordica charantia])

HSP 1 Score: 68.6 bits (166), Expect = 5.2e-08
Identity = 29/35 (82.86%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 35  LWAITHDKRVWAEADKFEPNRFMEEEVSVMGSDLR 70
           +WAITHD+RVWAE +KF+PNRFM EEVSVMGSDLR
Sbjct: 283 MWAITHDERVWAEPEKFDPNRFMGEEVSVMGSDLR 317

[Close]

BLAST of Lag0001382 vs. ExPASy Swiss-Prot
Match: Q9LMX7 (Cytochrome P450 78A5 OS=Arabidopsis thaliana OX=3702 GN=CYP78A5 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.6e-06
Identity = 18/35 (51.43%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 35  LWAITHDKRVWAEADKFEPNRFMEEEVSVMGSDLR 70
           +W+ITH+ ++W + + F P RF+ E+VS+MGSDLR
Sbjct: 414 MWSITHNAKIWTDPEAFMPERFISEDVSIMGSDLR 448

[Close]

BLAST of Lag0001382 vs. ExPASy Swiss-Prot
Match: P48420 (Cytochrome P450 78A1 OS=Zea mays OX=4577 GN=CYP78A1 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 6.2e-04
Identity = 21/39 (53.85%), Postives = 24/39 (61.54%), Query Frame = 0


Query: 35  LWAITHDKRVWAEADKFEPNRFMEEE----VSVMGSDLR 70
           +WAITHD  VWA+ D F P RF+  E    V V G DLR
Sbjct: 441 MWAITHDAAVWADPDAFAPERFLPSEGGADVDVRGVDLR 479

The following BLAST results are available for this feature:

BLAST of Lag0001382 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023002708.1	1.8e-08	82.86	cytochrome P450 78A5-like [Cucurbita maxima]	[more]
XP_023537799.1	3.1e-08	82.86	cytochrome P450 78A5-like [Cucurbita pepo subsp. pepo]	[more]
XP_008445440.1	4.0e-08	80.00	PREDICTED: cytochrome P450 78A5 [Cucumis melo] >KAA0064774.1 cytochrome P450 78A...	[more]
XP_004144260.1	5.2e-08	77.14	cytochrome P450 78A5 [Cucumis sativus] >KGN47658.1 hypothetical protein Csa_0182...	[more]
XP_022131979.1	5.2e-08	82.86	cytochrome P450 78A5 [Momordica charantia]	[more]

BLAST of Lag0001382 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LMX7	6.6e-06	51.43	Cytochrome P450 78A5 OS=Arabidopsis thaliana OX=3702 GN=CYP78A5 PE=2 SV=1	[more]
P48420	6.2e-04	53.85	Cytochrome P450 78A1 OS=Zea mays OX=4577 GN=CYP78A1 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
IPR036396	Cytochrome P450 superfamily	SUPERFAMILY	48264	Cytochrome P450	coord: 35..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001382.1	Lag0001382.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048437	floral organ development
biological_process	GO:0008284	positive regulation of cell population proliferation
biological_process	GO:0046622	positive regulation of organ growth
biological_process	GO:0040009	regulation of growth rate
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen