Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCCATTAATGTTATTGTGGATGATCATAGCAAAATGTCCAATAGTAGTTTTGATGAAGAAGATGGACTTTTCTGGGTTAGGAAATCCCAAATACCAAACCTTCTGTTTTAGCATATTCCTCTTTAATTGAAGATAGCTCGTCTTATCGACCTAGTGAAGATAGTGTAACTATTCCAACAGTTATCACCTTAGCTGATCATCTTGAAATCAGCTCTAGTGAATGTTCAATATTTGACTACCAACAGACAACAGAGCACTCTTCTCAAAATGATAATACTGATGTAACTAACTCTACTGAGTCCTCCATGCAGAAATTGGTACCCTCCACTCACATAGCTAAGAATCATCCTTCTAATGCCATTATTGGGGATGTTTGAAGTGGTATTATCGCGCGAAAGAAGGAAAGAAGAGATTATGCAAAAATGGTTGCAAATATGTGTTATACCTCCACCATGGAACCCACTACTGTCACTACTGCTCTCACTGATGAACACTGGATCTTGATAATGTAG
mRNA sequence
ATGGAATCCATTAATGTTATTGTGGATGATCATAGCAAAATGTCCAATAGTAGTTTTGATGAAGAAGATGGACTTTTCTGGGTTAGGAAATCCCAAATACCAAACCTTCTCTCGTCTTATCGACCTAGTGAAGATAGTGTAACTATTCCAACAGTTATCACCTTAGCTGATCATCTTGAAATCAGCTCTAGTGAATGTTCAATATTTGACTACCAACAGACAACAGAGCACTCTTCTCAAAATGATAATACTGATGTAACTAACTCTACTGAGTCCTCCATGCAGAAATTGGTACCCTCCACTCACATAGCTAAGAATCATCCTTCTAATGCCATTATTGGGGATGAAAGAAGAGATTATGCAAAAATGGTTGCAAATATGTGTTATACCTCCACCATGGAACCCACTACTGTCACTACTGCTCTCACTGATGAACACTGGATCTTGATAATGTAG
Coding sequence (CDS)
ATGGAATCCATTAATGTTATTGTGGATGATCATAGCAAAATGTCCAATAGTAGTTTTGATGAAGAAGATGGACTTTTCTGGGTTAGGAAATCCCAAATACCAAACCTTCTCTCGTCTTATCGACCTAGTGAAGATAGTGTAACTATTCCAACAGTTATCACCTTAGCTGATCATCTTGAAATCAGCTCTAGTGAATGTTCAATATTTGACTACCAACAGACAACAGAGCACTCTTCTCAAAATGATAATACTGATGTAACTAACTCTACTGAGTCCTCCATGCAGAAATTGGTACCCTCCACTCACATAGCTAAGAATCATCCTTCTAATGCCATTATTGGGGATGAAAGAAGAGATTATGCAAAAATGGTTGCAAATATGTGTTATACCTCCACCATGGAACCCACTACTGTCACTACTGCTCTCACTGATGAACACTGGATCTTGATAATGTAG
Protein sequence
MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQIPNLLSSYRPSEDSVTIPTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNHPSNAIIGDERRDYAKMVANMCYTSTMEPTTVTTALTDEHWILIM
Homology
BLAST of IVF0022702 vs. ExPASy TrEMBL
Match:
A0A5A7UDN6 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2277G00230 PE=4 SV=1)
HSP 1 Score: 206.5 bits (524), Expect = 8.1e-50
Identity = 112/126 (88.89%), Postives = 114/126 (90.48%), Query Frame = 0
Query: 1 MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQ--IPNLL---------SSYRPSEDSVTI 60
MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQ P++L SSYRPSEDSVTI
Sbjct: 107 MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQNTKPSVLAYSSLIEDSSSYRPSEDSVTI 166
Query: 61 PTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNHPS 116
PTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNHPS
Sbjct: 167 PTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNHPS 226
BLAST of IVF0022702 vs. ExPASy TrEMBL
Match:
A0A5A7VAZ1 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76G00160 PE=4 SV=1)
HSP 1 Score: 172.9 bits (437), Expect = 9.9e-40
Identity = 99/167 (59.28%), Postives = 113/167 (67.66%), Query Frame = 0
Query: 1 MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQ-----------IPNLLSSYRPSEDSVTI 60
ME INV +DDH + S S DEEDGLFWV KSQ + SS R S+D+V +
Sbjct: 1 MEFINVNMDDHIQTSKSHVDEEDGLFWVNKSQATRPTIFENSSLTKETSSIRISKDNVLV 60
Query: 61 PTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNHPS 120
T HLE SSSECSIFDYQQT EHSSQND+ D+ NST+SSMQKL+PSTH+AKNHP
Sbjct: 61 LAAATPVGHLENSSSECSIFDYQQTLEHSSQNDHQDLINSTKSSMQKLMPSTHVAKNHPL 120
Query: 121 NAIIGDER----------RDYAKMVANMCYTSTMEPTTVTTALTDEH 147
NAIIGD R R Y KMVAN+CYTSTME T+T ALTD+H
Sbjct: 121 NAIIGDVRSGITTRKKKQRCYVKMVANVCYTSTMELATITDALTDDH 167
BLAST of IVF0022702 vs. ExPASy TrEMBL
Match:
A0A5D3C707 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G00800 PE=4 SV=1)
HSP 1 Score: 164.9 bits (416), Expect = 2.7e-37
Identity = 97/161 (60.25%), Postives = 110/161 (68.32%), Query Frame = 0
Query: 1 MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQIPNLLSSYRPSEDSVTIPTVITLADHLE 60
MESINVIVDD+S+ + S DEEDG FW KSQ L +++ VI LE
Sbjct: 209 MESINVIVDDYSQTTKSRLDEEDGFFWADKSQAIRL--------TRLSLQLVI-----LE 268
Query: 61 ISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNHPSNAIIGD----- 120
IS SECSI DYQQT HSSQND TDV NSTESSMQ L+ ST++AKNHP NAIIGD
Sbjct: 269 ISLSECSISDYQQTPAHSSQNDPTDVNNSTESSMQNLMSSTYVAKNHPPNAIIGDARSDI 328
Query: 121 -----ERRDYAKMVANMCYTSTMEPTTVTTALTDEHWILIM 152
E+ DYAKMVAN+C+TSTMEPTTVT AL D+ WIL M
Sbjct: 329 TTQKKEQSDYAKMVANVCFTSTMEPTTVTDALKDDQWILAM 356
BLAST of IVF0022702 vs. ExPASy TrEMBL
Match:
A0A5A7SVT6 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold597G00080 PE=4 SV=1)
HSP 1 Score: 136.7 bits (343), Expect = 7.9e-29
Identity = 83/174 (47.70%), Postives = 106/174 (60.92%), Query Frame = 0
Query: 1 MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQIPNLL-------------SSYRPSEDSV 60
MES+NVI+DDH K++N S DEEDG W SQ SS + +S+
Sbjct: 103 MESVNVIIDDHEKIANGSIDEEDGDIWALYSQKTKTSGSEQSSLTNDKDNSSSHSNVNSM 162
Query: 61 TIPTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNH 120
+ T DHL S+SE S+ + QQT ++S + ++ SSMQK+V THIAKNH
Sbjct: 163 AVLIEPTSVDHLVDSTSEASVSNCQQTNDYS-----VKLPDTAGSSMQKIVQPTHIAKNH 222
Query: 121 PSNAIIGD----------ERRDYAKMVANMCYTSTMEPTTVTTALTDEHWILIM 152
PS++IIGD ER+ Y+KMVAN+CYTST+EPTTVT ALTDEHWIL M
Sbjct: 223 PSSSIIGDVHSSITTQKKERKYYSKMVANVCYTSTIEPTTVTAALTDEHWILAM 271
BLAST of IVF0022702 vs. ExPASy TrEMBL
Match:
A0A5A7SQH0 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00180 PE=4 SV=1)
HSP 1 Score: 132.5 bits (332), Expect = 1.5e-27
Identity = 83/174 (47.70%), Postives = 104/174 (59.77%), Query Frame = 0
Query: 1 MESINVIVDDHSKMSNSSFDEEDGLFW--------VRKSQIPNLL-----SSYRPSEDSV 60
MESINVI+DDH K S + +EED LFW +S+ +L+ SS + D +
Sbjct: 4 MESINVIIDDHGKTSKRNPNEEDKLFWGIYSQKIRTTRSKHSSLIENNGNSSSHSNIDGM 63
Query: 61 TIPTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNH 120
T P DH + +SE S QQT E +Q + ++ SS+QKL+P HIAKNH
Sbjct: 64 TTPVEAISVDHFKACTSEASTSTSQQTNEFPTQ-----LPDAAGSSIQKLMPLIHIAKNH 123
Query: 121 PSNAIIGD----------ERRDYAKMVANMCYTSTMEPTTVTTALTDEHWILIM 152
PSN+IIGD E RDYAKMVAN+CYTST+EPT VT ALTDEHW+L M
Sbjct: 124 PSNSIIGDVQSGVTTRKKEMRDYAKMVANVCYTSTVEPTIVTGALTDEHWLLAM 172
BLAST of IVF0022702 vs. NCBI nr
Match:
KAA0054113.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK29403.1 gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 203 bits (516), Expect = 4.94e-63
Identity = 112/126 (88.89%), Postives = 114/126 (90.48%), Query Frame = 0
Query: 1 MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQI--PNLL---------SSYRPSEDSVTI 60
MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQ P++L SSYRPSEDSVTI
Sbjct: 107 MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQNTKPSVLAYSSLIEDSSSYRPSEDSVTI 166
Query: 61 PTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNHPS 115
PTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNHPS
Sbjct: 167 PTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNHPS 226
BLAST of IVF0022702 vs. NCBI nr
Match:
KAA0065472.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK08714.1 putative mitochondrial protein [Cucumis melo var. makuwa])
HSP 1 Score: 169 bits (429), Expect = 1.01e-50
Identity = 100/167 (59.88%), Postives = 114/167 (68.26%), Query Frame = 0
Query: 1 MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQI--PNLL---------SSYRPSEDSVTI 60
ME INV +DDH + S S DEEDGLFWV KSQ P + SS R S+D+V +
Sbjct: 1 MEFINVNMDDHIQTSKSHVDEEDGLFWVNKSQATRPTIFENSSLTKETSSIRISKDNVLV 60
Query: 61 PTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNHPS 120
T HLE SSSECSIFDYQQT EHSSQND+ D+ NST+SSMQKL+PSTH+AKNHP
Sbjct: 61 LAAATPVGHLENSSSECSIFDYQQTLEHSSQNDHQDLINSTKSSMQKLMPSTHVAKNHPL 120
Query: 121 NAIIGDER----------RDYAKMVANMCYTSTMEPTTVTTALTDEH 146
NAIIGD R R Y KMVAN+CYTSTME T+T ALTD+H
Sbjct: 121 NAIIGDVRSGITTRKKKQRCYVKMVANVCYTSTMELATITDALTDDH 167
BLAST of IVF0022702 vs. NCBI nr
Match:
KAA0049939.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK07671.1 gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 162 bits (410), Expect = 1.86e-45
Identity = 97/161 (60.25%), Postives = 110/161 (68.32%), Query Frame = 0
Query: 1 MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQIPNLLSSYRPSEDSVTIPTVITLADHLE 60
MESINVIVDD+S+ + S DEEDG FW KSQ L +++ VI LE
Sbjct: 209 MESINVIVDDYSQTTKSRLDEEDGFFWADKSQAIRLTR--------LSLQLVI-----LE 268
Query: 61 ISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNHPSNAIIGD----- 120
IS SECSI DYQQT HSSQND TDV NSTESSMQ L+ ST++AKNHP NAIIGD
Sbjct: 269 ISLSECSISDYQQTPAHSSQNDPTDVNNSTESSMQNLMSSTYVAKNHPPNAIIGDARSDI 328
Query: 121 -----ERRDYAKMVANMCYTSTMEPTTVTTALTDEHWILIM 151
E+ DYAKMVAN+C+TSTMEPTTVT AL D+ WIL M
Sbjct: 329 TTQKKEQSDYAKMVANVCFTSTMEPTTVTDALKDDQWILAM 356
BLAST of IVF0022702 vs. NCBI nr
Match:
KAA0032633.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK23515.1 putative mitochondrial protein [Cucumis melo var. makuwa])
HSP 1 Score: 130 bits (327), Expect = 3.92e-35
Identity = 83/174 (47.70%), Postives = 104/174 (59.77%), Query Frame = 0
Query: 1 MESINVIVDDHSKMSNSSFDEEDGLFW--------VRKSQIPNLL-----SSYRPSEDSV 60
MESINVI+DDH K S + +EED LFW +S+ +L+ SS + D +
Sbjct: 4 MESINVIIDDHGKTSKRNPNEEDKLFWGIYSQKIRTTRSKHSSLIENNGNSSSHSNIDGM 63
Query: 61 TIPTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNH 120
T P DH + +SE S QQT E +Q + ++ SS+QKL+P HIAKNH
Sbjct: 64 TTPVEAISVDHFKACTSEASTSTSQQTNEFPTQ-----LPDAAGSSIQKLMPLIHIAKNH 123
Query: 121 PSNAIIGD----------ERRDYAKMVANMCYTSTMEPTTVTTALTDEHWILIM 151
PSN+IIGD E RDYAKMVAN+CYTST+EPT VT ALTDEHW+L M
Sbjct: 124 PSNSIIGDVQSGVTTRKKEMRDYAKMVANVCYTSTVEPTIVTGALTDEHWLLAM 172
BLAST of IVF0022702 vs. NCBI nr
Match:
KAA0035372.1 (gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 134 bits (338), Expect = 2.85e-33
Identity = 83/174 (47.70%), Postives = 107/174 (61.49%), Query Frame = 0
Query: 1 MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQIPNLLSSYRPS-------------EDSV 60
MES+NVI+DDH K++N S DEEDG W SQ S + S +S+
Sbjct: 103 MESVNVIIDDHEKIANGSIDEEDGDIWALYSQKTKTSGSEQSSLTNDKDNSSSHSNVNSM 162
Query: 61 TIPTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNH 120
+ T DHL S+SE S+ + QQT ++S + + ++ SSMQK+V THIAKNH
Sbjct: 163 AVLIEPTSVDHLVDSTSEASVSNCQQTNDYSVK-----LPDTAGSSMQKIVQPTHIAKNH 222
Query: 121 PSNAIIGD----------ERRDYAKMVANMCYTSTMEPTTVTTALTDEHWILIM 151
PS++IIGD ER+ Y+KMVAN+CYTST+EPTTVT ALTDEHWIL M
Sbjct: 223 PSSSIIGDVHSSITTQKKERKYYSKMVANVCYTSTIEPTTVTAALTDEHWILAM 271
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7UDN6 | 8.1e-50 | 88.89 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2277... | [more] |
| A0A5A7VAZ1 | 9.9e-40 | 59.28 | Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... | [more] |
| A0A5D3C707 | 2.7e-37 | 60.25 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G... | [more] |
| A0A5A7SVT6 | 7.9e-29 | 47.70 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold597G... | [more] |
| A0A5A7SQH0 | 1.5e-27 | 47.70 | Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0054113.1 | 4.94e-63 | 88.89 | gag-pol polyprotein [Cucumis melo var. makuwa] >TYK29403.1 gag-pol polyprotein [... | [more] |
| KAA0065472.1 | 1.01e-50 | 59.88 | putative mitochondrial protein [Cucumis melo var. makuwa] >TYK08714.1 putative m... | [more] |
| KAA0049939.1 | 1.86e-45 | 60.25 | gag-pol polyprotein [Cucumis melo var. makuwa] >TYK07671.1 gag-pol polyprotein [... | [more] |
| KAA0032633.1 | 3.92e-35 | 47.70 | putative mitochondrial protein [Cucumis melo var. makuwa] >TYK23515.1 putative m... | [more] |
| KAA0035372.1 | 2.85e-33 | 47.70 | gag-pol polyprotein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
