IVF0022702.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0022702.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag-pol polyprotein
Location	chr10: 24941318 .. 24941835 (-)
Sequence length	456
RNA-Seq Expression	IVF0022702.1
Synteny	IVF0022702.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCCATTAATGTTATTGTGGATGATCATAGCAAAATGTCCAATAGTAGTTTTGATGAAGAAGATGGACTTTTCTGGGTTAGGAAATCCCAAATACCAAACCTTCTGTTTTAGCATATTCCTCTTTAATTGAAGATAGCTCGTCTTATCGACCTAGTGAAGATAGTGTAACTATTCCAACAGTTATCACCTTAGCTGATCATCTTGAAATCAGCTCTAGTGAATGTTCAATATTTGACTACCAACAGACAACAGAGCACTCTTCTCAAAATGATAATACTGATGTAACTAACTCTACTGAGTCCTCCATGCAGAAATTGGTACCCTCCACTCACATAGCTAAGAATCATCCTTCTAATGCCATTATTGGGGATGTTTGAAGTGGTATTATCGCGCGAAAGAAGGAAAGAAGAGATTATGCAAAAATGGTTGCAAATATGTGTTATACCTCCACCATGGAACCCACTACTGTCACTACTGCTCTCACTGATGAACACTGGATCTTGATAATGTAG

mRNA sequence

ATGGAATCCATTAATGTTATTGTGGATGATCATAGCAAAATGTCCAATAGTAGTTTTGATGAAGAAGATGGACTTTTCTGGGTTAGGAAATCCCAAATACCAAACCTTCTCTCGTCTTATCGACCTAGTGAAGATAGTGTAACTATTCCAACAGTTATCACCTTAGCTGATCATCTTGAAATCAGCTCTAGTGAATGTTCAATATTTGACTACCAACAGACAACAGAGCACTCTTCTCAAAATGATAATACTGATGTAACTAACTCTACTGAGTCCTCCATGCAGAAATTGGTACCCTCCACTCACATAGCTAAGAATCATCCTTCTAATGCCATTATTGGGGATGAAAGAAGAGATTATGCAAAAATGGTTGCAAATATGTGTTATACCTCCACCATGGAACCCACTACTGTCACTACTGCTCTCACTGATGAACACTGGATCTTGATAATGTAG

Coding sequence (CDS)

ATGGAATCCATTAATGTTATTGTGGATGATCATAGCAAAATGTCCAATAGTAGTTTTGATGAAGAAGATGGACTTTTCTGGGTTAGGAAATCCCAAATACCAAACCTTCTCTCGTCTTATCGACCTAGTGAAGATAGTGTAACTATTCCAACAGTTATCACCTTAGCTGATCATCTTGAAATCAGCTCTAGTGAATGTTCAATATTTGACTACCAACAGACAACAGAGCACTCTTCTCAAAATGATAATACTGATGTAACTAACTCTACTGAGTCCTCCATGCAGAAATTGGTACCCTCCACTCACATAGCTAAGAATCATCCTTCTAATGCCATTATTGGGGATGAAAGAAGAGATTATGCAAAAATGGTTGCAAATATGTGTTATACCTCCACCATGGAACCCACTACTGTCACTACTGCTCTCACTGATGAACACTGGATCTTGATAATGTAG

Protein sequence

MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQIPNLLSSYRPSEDSVTIPTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNHPSNAIIGDERRDYAKMVANMCYTSTMEPTTVTTALTDEHWILIM

Homology

[Close]

BLAST of IVF0022702.1 vs. ExPASy TrEMBL
Match: A0A5A7UDN6 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2277G00230 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 8.1e-50
Identity = 112/126 (88.89%), Postives = 114/126 (90.48%), Query Frame = 0


Query: 1   MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQ--IPNLL---------SSYRPSEDSVTI 60
           MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQ   P++L         SSYRPSEDSVTI
Sbjct: 107 MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQNTKPSVLAYSSLIEDSSSYRPSEDSVTI 166

Query: 61  PTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNHPS 116
           PTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNHPS
Sbjct: 167 PTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNHPS 226

[Close]

BLAST of IVF0022702.1 vs. ExPASy TrEMBL
Match: A0A5A7VAZ1 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76G00160 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 9.9e-40
Identity = 99/167 (59.28%), Postives = 113/167 (67.66%), Query Frame = 0


Query: 1   MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQ-----------IPNLLSSYRPSEDSVTI 60
           ME INV +DDH + S S  DEEDGLFWV KSQ           +    SS R S+D+V +
Sbjct: 1   MEFINVNMDDHIQTSKSHVDEEDGLFWVNKSQATRPTIFENSSLTKETSSIRISKDNVLV 60

Query: 61  PTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNHPS 120
               T   HLE SSSECSIFDYQQT EHSSQND+ D+ NST+SSMQKL+PSTH+AKNHP 
Sbjct: 61  LAAATPVGHLENSSSECSIFDYQQTLEHSSQNDHQDLINSTKSSMQKLMPSTHVAKNHPL 120

Query: 121 NAIIGDER----------RDYAKMVANMCYTSTMEPTTVTTALTDEH 147
           NAIIGD R          R Y KMVAN+CYTSTME  T+T ALTD+H
Sbjct: 121 NAIIGDVRSGITTRKKKQRCYVKMVANVCYTSTMELATITDALTDDH 167

[Close]

BLAST of IVF0022702.1 vs. ExPASy TrEMBL
Match: A0A5D3C707 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G00800 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.7e-37
Identity = 97/161 (60.25%), Postives = 110/161 (68.32%), Query Frame = 0


Query: 1   MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQIPNLLSSYRPSEDSVTIPTVITLADHLE 60
           MESINVIVDD+S+ + S  DEEDG FW  KSQ   L          +++  VI     LE
Sbjct: 209 MESINVIVDDYSQTTKSRLDEEDGFFWADKSQAIRL--------TRLSLQLVI-----LE 268

Query: 61  ISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNHPSNAIIGD----- 120
           IS SECSI DYQQT  HSSQND TDV NSTESSMQ L+ ST++AKNHP NAIIGD     
Sbjct: 269 ISLSECSISDYQQTPAHSSQNDPTDVNNSTESSMQNLMSSTYVAKNHPPNAIIGDARSDI 328

Query: 121 -----ERRDYAKMVANMCYTSTMEPTTVTTALTDEHWILIM 152
                E+ DYAKMVAN+C+TSTMEPTTVT AL D+ WIL M
Sbjct: 329 TTQKKEQSDYAKMVANVCFTSTMEPTTVTDALKDDQWILAM 356

[Close]

BLAST of IVF0022702.1 vs. ExPASy TrEMBL
Match: A0A5A7SVT6 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold597G00080 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 7.9e-29
Identity = 83/174 (47.70%), Postives = 106/174 (60.92%), Query Frame = 0


Query: 1   MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQIPNLL-------------SSYRPSEDSV 60
           MES+NVI+DDH K++N S DEEDG  W   SQ                  SS   + +S+
Sbjct: 103 MESVNVIIDDHEKIANGSIDEEDGDIWALYSQKTKTSGSEQSSLTNDKDNSSSHSNVNSM 162

Query: 61  TIPTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNH 120
            +    T  DHL  S+SE S+ + QQT ++S       + ++  SSMQK+V  THIAKNH
Sbjct: 163 AVLIEPTSVDHLVDSTSEASVSNCQQTNDYS-----VKLPDTAGSSMQKIVQPTHIAKNH 222

Query: 121 PSNAIIGD----------ERRDYAKMVANMCYTSTMEPTTVTTALTDEHWILIM 152
           PS++IIGD          ER+ Y+KMVAN+CYTST+EPTTVT ALTDEHWIL M
Sbjct: 223 PSSSIIGDVHSSITTQKKERKYYSKMVANVCYTSTIEPTTVTAALTDEHWILAM 271

[Close]

BLAST of IVF0022702.1 vs. ExPASy TrEMBL
Match: A0A5A7SQH0 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00180 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.5e-27
Identity = 83/174 (47.70%), Postives = 104/174 (59.77%), Query Frame = 0


Query: 1   MESINVIVDDHSKMSNSSFDEEDGLFW--------VRKSQIPNLL-----SSYRPSEDSV 60
           MESINVI+DDH K S  + +EED LFW          +S+  +L+     SS   + D +
Sbjct: 4   MESINVIIDDHGKTSKRNPNEEDKLFWGIYSQKIRTTRSKHSSLIENNGNSSSHSNIDGM 63

Query: 61  TIPTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNH 120
           T P      DH +  +SE S    QQT E  +Q     + ++  SS+QKL+P  HIAKNH
Sbjct: 64  TTPVEAISVDHFKACTSEASTSTSQQTNEFPTQ-----LPDAAGSSIQKLMPLIHIAKNH 123

Query: 121 PSNAIIGD----------ERRDYAKMVANMCYTSTMEPTTVTTALTDEHWILIM 152
           PSN+IIGD          E RDYAKMVAN+CYTST+EPT VT ALTDEHW+L M
Sbjct: 124 PSNSIIGDVQSGVTTRKKEMRDYAKMVANVCYTSTVEPTIVTGALTDEHWLLAM 172

[Close]

BLAST of IVF0022702.1 vs. NCBI nr
Match: KAA0054113.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK29403.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 203 bits (516), Expect = 4.94e-63
Identity = 112/126 (88.89%), Postives = 114/126 (90.48%), Query Frame = 0


Query: 1   MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQI--PNLL---------SSYRPSEDSVTI 60
           MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQ   P++L         SSYRPSEDSVTI
Sbjct: 107 MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQNTKPSVLAYSSLIEDSSSYRPSEDSVTI 166

Query: 61  PTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNHPS 115
           PTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNHPS
Sbjct: 167 PTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNHPS 226

[Close]

BLAST of IVF0022702.1 vs. NCBI nr
Match: KAA0065472.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK08714.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 169 bits (429), Expect = 1.01e-50
Identity = 100/167 (59.88%), Postives = 114/167 (68.26%), Query Frame = 0


Query: 1   MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQI--PNLL---------SSYRPSEDSVTI 60
           ME INV +DDH + S S  DEEDGLFWV KSQ   P +          SS R S+D+V +
Sbjct: 1   MEFINVNMDDHIQTSKSHVDEEDGLFWVNKSQATRPTIFENSSLTKETSSIRISKDNVLV 60

Query: 61  PTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNHPS 120
               T   HLE SSSECSIFDYQQT EHSSQND+ D+ NST+SSMQKL+PSTH+AKNHP 
Sbjct: 61  LAAATPVGHLENSSSECSIFDYQQTLEHSSQNDHQDLINSTKSSMQKLMPSTHVAKNHPL 120

Query: 121 NAIIGDER----------RDYAKMVANMCYTSTMEPTTVTTALTDEH 146
           NAIIGD R          R Y KMVAN+CYTSTME  T+T ALTD+H
Sbjct: 121 NAIIGDVRSGITTRKKKQRCYVKMVANVCYTSTMELATITDALTDDH 167

[Close]

BLAST of IVF0022702.1 vs. NCBI nr
Match: KAA0049939.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK07671.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 162 bits (410), Expect = 1.86e-45
Identity = 97/161 (60.25%), Postives = 110/161 (68.32%), Query Frame = 0


Query: 1   MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQIPNLLSSYRPSEDSVTIPTVITLADHLE 60
           MESINVIVDD+S+ + S  DEEDG FW  KSQ   L          +++  VI     LE
Sbjct: 209 MESINVIVDDYSQTTKSRLDEEDGFFWADKSQAIRLTR--------LSLQLVI-----LE 268

Query: 61  ISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNHPSNAIIGD----- 120
           IS SECSI DYQQT  HSSQND TDV NSTESSMQ L+ ST++AKNHP NAIIGD     
Sbjct: 269 ISLSECSISDYQQTPAHSSQNDPTDVNNSTESSMQNLMSSTYVAKNHPPNAIIGDARSDI 328

Query: 121 -----ERRDYAKMVANMCYTSTMEPTTVTTALTDEHWILIM 151
                E+ DYAKMVAN+C+TSTMEPTTVT AL D+ WIL M
Sbjct: 329 TTQKKEQSDYAKMVANVCFTSTMEPTTVTDALKDDQWILAM 356

[Close]

BLAST of IVF0022702.1 vs. NCBI nr
Match: KAA0032633.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK23515.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 130 bits (327), Expect = 3.92e-35
Identity = 83/174 (47.70%), Postives = 104/174 (59.77%), Query Frame = 0


Query: 1   MESINVIVDDHSKMSNSSFDEEDGLFW--------VRKSQIPNLL-----SSYRPSEDSV 60
           MESINVI+DDH K S  + +EED LFW          +S+  +L+     SS   + D +
Sbjct: 4   MESINVIIDDHGKTSKRNPNEEDKLFWGIYSQKIRTTRSKHSSLIENNGNSSSHSNIDGM 63

Query: 61  TIPTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNH 120
           T P      DH +  +SE S    QQT E  +Q     + ++  SS+QKL+P  HIAKNH
Sbjct: 64  TTPVEAISVDHFKACTSEASTSTSQQTNEFPTQ-----LPDAAGSSIQKLMPLIHIAKNH 123

Query: 121 PSNAIIGD----------ERRDYAKMVANMCYTSTMEPTTVTTALTDEHWILIM 151
           PSN+IIGD          E RDYAKMVAN+CYTST+EPT VT ALTDEHW+L M
Sbjct: 124 PSNSIIGDVQSGVTTRKKEMRDYAKMVANVCYTSTVEPTIVTGALTDEHWLLAM 172

[Close]

BLAST of IVF0022702.1 vs. NCBI nr
Match: KAA0035372.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 134 bits (338), Expect = 2.85e-33
Identity = 83/174 (47.70%), Postives = 107/174 (61.49%), Query Frame = 0


Query: 1   MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQIPNLLSSYRPS-------------EDSV 60
           MES+NVI+DDH K++N S DEEDG  W   SQ      S + S              +S+
Sbjct: 103 MESVNVIIDDHEKIANGSIDEEDGDIWALYSQKTKTSGSEQSSLTNDKDNSSSHSNVNSM 162

Query: 61  TIPTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNH 120
            +    T  DHL  S+SE S+ + QQT ++S +     + ++  SSMQK+V  THIAKNH
Sbjct: 163 AVLIEPTSVDHLVDSTSEASVSNCQQTNDYSVK-----LPDTAGSSMQKIVQPTHIAKNH 222

Query: 121 PSNAIIGD----------ERRDYAKMVANMCYTSTMEPTTVTTALTDEHWILIM 151
           PS++IIGD          ER+ Y+KMVAN+CYTST+EPTTVT ALTDEHWIL M
Sbjct: 223 PSSSIIGDVHSSITTQKKERKYYSKMVANVCYTSTIEPTTVTAALTDEHWILAM 271

The following BLAST results are available for this feature:

BLAST of IVF0022702.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0022702.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UDN6	8.1e-50	88.89	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2277...	[more]
A0A5A7VAZ1	9.9e-40	59.28	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3C707	2.7e-37	60.25	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G...	[more]
A0A5A7SVT6	7.9e-29	47.70	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold597G...	[more]
A0A5A7SQH0	1.5e-27	47.70	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of IVF0022702.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054113.1	4.94e-63	88.89	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK29403.1 gag-pol polyprotein [...	[more]
KAA0065472.1	1.01e-50	59.88	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK08714.1 putative m...	[more]
KAA0049939.1	1.86e-45	60.25	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK07671.1 gag-pol polyprotein [...	[more]
KAA0032633.1	3.92e-35	47.70	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK23515.1 putative m...	[more]
KAA0035372.1	2.85e-33	47.70	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0022702.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..93

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0022702	IVF0022702	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0022702.1-exon	IVF0022702.1-exon-chr10:24941318..24941428	exon
IVF0022702.1-exon	IVF0022702.1-exon-chr10:24941459..24941693	exon
IVF0022702.1-exon	IVF0022702.1-exon-chr10:24941726..24941835	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0022702.1-cds	IVF0022702.1-cds-chr10:24941318..24941428	CDS
IVF0022702.1-cds	IVF0022702.1-cds-chr10:24941459..24941693	CDS
IVF0022702.1-cds	IVF0022702.1-cds-chr10:24941726..24941835	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0022702.1	IVF0022702.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding