Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATGAGGATGATGATCCTATCAGCTGCGGCCACATTGAAGATAAAAATGTTCATTTCGGTTGCGACCACATTGAAGATGAAGATGATGATCCTTTCGACTACGATCATATTGAAGACGAAAATGAAGATGATGATCCTCTTCGTTGCGATCGCATTAAAGATGAAGATGATAATCCTCTCCGCTGCTGCATTGAAGACGATGATGAAGATGATGATCCTCTGGATTGCGGTGCATTGAAGACAAAGATGAAAATGATGATCCTCTTGGTTGCGGCTATATTGAAGATGAAGATGAACATGATCCTCTCGGTTGCGGTCGCATTGAAGACGAAGATGAAAATAATCCTCTCGACTGCAAAACATCAGAGATGA
mRNA sequence
ATGGAAGATGAGGATGATGATCCTATCAGCTGCGGCCACATTGAAGATAAAAATGTTCATTTCGGTTGCGACCACATTGAAGATGAAGATGATGATCCTTTCGACTACGATCATATTGAAGACGAAAATGAAGATGATGATCCTCTTCGTTGCGATCGCATTAAAGATGAAGATGATAATCCTCTCCGCTGCTGCATTGAAGACGATGATGAAGATGATGATCCTCTGGATTGCGGTGCATTGAAGACAAAGATGAAAATGATGATCCTCTTGGTTGCGGCTATATTGAAGATGAAGATGAACATGATCCTCTCGGTTGCGGTCGCATTGAAGACGAAGATGAAAATAATCCTCTCGACTGCAAAACATCAGAGATGA
Coding sequence (CDS)
ATGGAAGATGAGGATGATGATCCTATCAGCTGCGGCCACATTGAAGATAAAAATGTTCATTTCGGTTGCGACCACATTGAAGATGAAGATGATGATCCTTTCGACTACGATCATATTGAAGACGAAAATGAAGATGATGATCCTCTTCGTTGCGATCGCATTAAAGATGAAGATGATAATCCTCTCCGCTGCTGCATTGAAGACGATGATGAAGATGATGATCCTCTGGATTGCGGTGCATTGAAGACAAAGATGAAAATGATGATCCTCTTGGTTGCGGCTATATTGAAGATGAAGATGAACATGATCCTCTCGGTTGCGGTCGCATTGAAGACGAAGATGAAAATAATCCTCTCGACTGCAAAACATCAGAGATGA
Protein sequence
MEDEDDDPISCGHIEDKNVHFGCDHIEDEDDDPFDYDHIEDENEDDDPLRCDRIKDEDDNPLRCCIEDDDEDDDPLDCGALKTKMKMMILLVAAILKMKMNMILSVAVALKTKMKIILSTAKHQR
Homology
BLAST of IVF0022122 vs. ExPASy TrEMBL
Match:
A0A5D3BA49 (Calsequestrin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G00130 PE=4 SV=1)
HSP 1 Score: 238.8 bits (608), Expect = 1.2e-59
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0
Query: 1 MEDEDDDPISCGHIEDKNVHFGCDHIEDEDDDPFDYDHIEDENEDDDPLRCDRIKDEDDN 60
MEDEDDDPISCGHIEDKNVHFGCDHIEDEDDDPFDYDHIEDENEDDDPLRCDRIKDEDDN
Sbjct: 1 MEDEDDDPISCGHIEDKNVHFGCDHIEDEDDDPFDYDHIEDENEDDDPLRCDRIKDEDDN 60
Query: 61 PLRCCIEDDDEDDDPLDCGALKTKMKMMILLVAAILKMKMNMILSVAVALKTKMKIILST 120
PLRCCIEDDDEDDDPLDCGALKTKMKMMILLVAAILKMKMNMILSVAVALKTKMKIILST
Sbjct: 61 PLRCCIEDDDEDDDPLDCGALKTKMKMMILLVAAILKMKMNMILSVAVALKTKMKIILST 120
Query: 121 AKHQR 126
AKHQR
Sbjct: 121 AKHQR 125
BLAST of IVF0022122 vs. ExPASy TrEMBL
Match:
A0A1S4E042 (calsequestrin-1-like OS=Cucumis melo OX=3656 GN=LOC107991299 PE=4 SV=1)
HSP 1 Score: 238.8 bits (608), Expect = 1.2e-59
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0
Query: 1 MEDEDDDPISCGHIEDKNVHFGCDHIEDEDDDPFDYDHIEDENEDDDPLRCDRIKDEDDN 60
MEDEDDDPISCGHIEDKNVHFGCDHIEDEDDDPFDYDHIEDENEDDDPLRCDRIKDEDDN
Sbjct: 1 MEDEDDDPISCGHIEDKNVHFGCDHIEDEDDDPFDYDHIEDENEDDDPLRCDRIKDEDDN 60
Query: 61 PLRCCIEDDDEDDDPLDCGALKTKMKMMILLVAAILKMKMNMILSVAVALKTKMKIILST 120
PLRCCIEDDDEDDDPLDCGALKTKMKMMILLVAAILKMKMNMILSVAVALKTKMKIILST
Sbjct: 61 PLRCCIEDDDEDDDPLDCGALKTKMKMMILLVAAILKMKMNMILSVAVALKTKMKIILST 120
Query: 121 AKHQR 126
AKHQR
Sbjct: 121 AKHQR 125
BLAST of IVF0022122 vs. ExPASy TrEMBL
Match:
A0A5D3DSX1 (Prostatic spermine-binding protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00120 PE=4 SV=1)
HSP 1 Score: 85.9 bits (211), Expect = 1.3e-13
Identity = 75/161 (46.58%), Postives = 89/161 (55.28%), Query Frame = 0
Query: 1 MEDEDDDPISCGHIEDKNVH--------------FGCDHIEDEDDDPFDYDHIED----- 60
+E E+DDP+ CGHIED+N C+ +DEDDDP + +IED
Sbjct: 64 IEGENDDPLGCGHIEDENGDPLDCKCIKYEDDDPLDCECFKDEDDDPLNCRYIEDEDDED 123
Query: 61 ---------ENEDDDPLRCDRIKDEDDNPLRCC-IEDD---------DEDDDPLDCGALK 120
E+EDDDPL CD I+DED+N L C I+DD DEDDDP ALK
Sbjct: 124 DDLISCVHIEDEDDDPLGCDHIEDEDNNSLDCSRIKDDDSIDYERIKDEDDDPSAVVALK 183
Query: 121 TKMKMMILLVAAILKMKMNMILSVAVALKTKMKIILSTAKH 124
KMKMM+L VA LKMKM MILS +V LK ILST H
Sbjct: 184 -KMKMMVLSVAIALKMKM-MILSTSVVLKKMKMKILSTVTH 222
BLAST of IVF0022122 vs. ExPASy TrEMBL
Match:
A0A5A7SX67 (Prostatic spermine-binding protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001230 PE=4 SV=1)
HSP 1 Score: 78.6 bits (192), Expect = 2.1e-11
Identity = 56/108 (51.85%), Postives = 64/108 (59.26%), Query Frame = 0
Query: 3 DEDDDPISCGHIEDKNVHFGCD--HIEDED-DDPFDYDHIEDENEDDDPLRCDRIKDED- 62
+++DDP CG+IED+ D IEDED DDP YD IEDENED DP C I+DED
Sbjct: 10 EDEDDPFGCGNIEDEGKDDTLDFLRIEDEDEDDPLGYDIIEDENEDHDPFGCGNIEDEDK 69
Query: 63 DNPLRC-------------CIEDDDEDDDPLDCGALKTKMKMMILLVA 94
D+PL C C +DEDDDPL C LK KM MMILL A
Sbjct: 70 DDPLDCGYIEDEDEDDPLDCNSIEDEDDDPLSCNTLKMKMMMMILLAA 117
BLAST of IVF0022122 vs. ExPASy TrEMBL
Match:
A0A1S3CK92 (prostatic spermine-binding protein-like OS=Cucumis melo OX=3656 GN=LOC103501754 PE=4 SV=1)
HSP 1 Score: 78.6 bits (192), Expect = 2.1e-11
Identity = 60/124 (48.39%), Postives = 69/124 (55.65%), Query Frame = 0
Query: 2 EDED-DDPISCGHI--EDKNVHFGCDHIEDE---------------DDDPFDYDHIEDEN 61
ED+D DDP+SC I ED++ FGC +IEDE +DDP YD IEDEN
Sbjct: 81 EDKDEDDPLSCSDIEYEDEDDPFGCGNIEDEGKDDTLDFLRIEDEDEDDPLGYDIIEDEN 140
Query: 62 EDDDPLRCDRIKDED-DNPLRC-------------CIEDDDEDDDPLDCGALKTKMKMMI 94
ED DP C I+DED D+PL C C +DEDDDPL C LK KM MMI
Sbjct: 141 EDHDPFGCGNIEDEDKDDPLDCGYIEDEDEDDPLDCNSIEDEDDDPLSCNTLKMKMMMMI 200
BLAST of IVF0022122 vs. NCBI nr
Match:
XP_016901598.1 (PREDICTED: calsequestrin-1-like [Cucumis melo] >KAA0063470.1 calsequestrin-1-like [Cucumis melo var. makuwa] >TYJ95756.1 calsequestrin-1-like [Cucumis melo var. makuwa])
HSP 1 Score: 241 bits (614), Expect = 6.13e-80
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0
Query: 1 MEDEDDDPISCGHIEDKNVHFGCDHIEDEDDDPFDYDHIEDENEDDDPLRCDRIKDEDDN 60
MEDEDDDPISCGHIEDKNVHFGCDHIEDEDDDPFDYDHIEDENEDDDPLRCDRIKDEDDN
Sbjct: 1 MEDEDDDPISCGHIEDKNVHFGCDHIEDEDDDPFDYDHIEDENEDDDPLRCDRIKDEDDN 60
Query: 61 PLRCCIEDDDEDDDPLDCGALKTKMKMMILLVAAILKMKMNMILSVAVALKTKMKIILST 120
PLRCCIEDDDEDDDPLDCGALKTKMKMMILLVAAILKMKMNMILSVAVALKTKMKIILST
Sbjct: 61 PLRCCIEDDDEDDDPLDCGALKTKMKMMILLVAAILKMKMNMILSVAVALKTKMKIILST 120
Query: 121 AKHQR 125
AKHQR
Sbjct: 121 AKHQR 125
BLAST of IVF0022122 vs. NCBI nr
Match:
KAA0047489.1 (prostatic spermine-binding protein-like [Cucumis melo var. makuwa] >TYK26455.1 prostatic spermine-binding protein-like [Cucumis melo var. makuwa])
HSP 1 Score: 88.2 bits (217), Expect = 2.45e-18
Identity = 75/161 (46.58%), Postives = 89/161 (55.28%), Query Frame = 0
Query: 1 MEDEDDDPISCGHIEDKNVH--------------FGCDHIEDEDDDPFDYDHIEDEN--- 60
+E E+DDP+ CGHIED+N C+ +DEDDDP + +IEDE+
Sbjct: 64 IEGENDDPLGCGHIEDENGDPLDCKCIKYEDDDPLDCECFKDEDDDPLNCRYIEDEDDED 123
Query: 61 -----------EDDDPLRCDRIKDEDDNPLRCC-IEDDD---------EDDDPLDCGALK 120
EDDDPL CD I+DED+N L C I+DDD EDDDP ALK
Sbjct: 124 DDLISCVHIEDEDDDPLGCDHIEDEDNNSLDCSRIKDDDSIDYERIKDEDDDPSAVVALK 183
Query: 121 TKMKMMILLVAAILKMKMNMILSVAVALKTKMKIILSTAKH 123
KMKMM+L VA LKMKM MILS +V LK ILST H
Sbjct: 184 -KMKMMVLSVAIALKMKM-MILSTSVVLKKMKMKILSTVTH 222
BLAST of IVF0022122 vs. NCBI nr
Match:
KAA0035630.1 (prostatic spermine-binding protein-like [Cucumis melo var. makuwa] >TYK30912.1 prostatic spermine-binding protein-like [Cucumis melo var. makuwa])
HSP 1 Score: 79.3 bits (194), Expect = 4.09e-16
Identity = 56/108 (51.85%), Postives = 64/108 (59.26%), Query Frame = 0
Query: 3 DEDDDPISCGHIEDKNVHFGCD--HIEDED-DDPFDYDHIEDENEDDDPLRCDRIKDED- 62
+++DDP CG+IED+ D IEDED DDP YD IEDENED DP C I+DED
Sbjct: 10 EDEDDPFGCGNIEDEGKDDTLDFLRIEDEDEDDPLGYDIIEDENEDHDPFGCGNIEDEDK 69
Query: 63 DNPLRC-------------CIEDDDEDDDPLDCGALKTKMKMMILLVA 93
D+PL C C +DEDDDPL C LK KM MMILL A
Sbjct: 70 DDPLDCGYIEDEDEDDPLDCNSIEDEDDDPLSCNTLKMKMMMMILLAA 117
BLAST of IVF0022122 vs. NCBI nr
Match:
XP_008463661.1 (PREDICTED: prostatic spermine-binding protein-like [Cucumis melo])
HSP 1 Score: 79.3 bits (194), Expect = 2.89e-15
Identity = 56/108 (51.85%), Postives = 64/108 (59.26%), Query Frame = 0
Query: 3 DEDDDPISCGHIEDKNVHFGCD--HIEDED-DDPFDYDHIEDENEDDDPLRCDRIKDED- 62
+++DDP CG+IED+ D IEDED DDP YD IEDENED DP C I+DED
Sbjct: 97 EDEDDPFGCGNIEDEGKDDTLDFLRIEDEDEDDPLGYDIIEDENEDHDPFGCGNIEDEDK 156
Query: 63 DNPLRC-------------CIEDDDEDDDPLDCGALKTKMKMMILLVA 93
D+PL C C +DEDDDPL C LK KM MMILL A
Sbjct: 157 DDPLDCGYIEDEDEDDPLDCNSIEDEDDDPLSCNTLKMKMMMMILLAA 204
BLAST of IVF0022122 vs. NCBI nr
Match:
KAA0033095.1 (calsequestrin-1-like [Cucumis melo var. makuwa] >TYK17137.1 calsequestrin-1-like [Cucumis melo var. makuwa])
HSP 1 Score: 68.9 bits (167), Expect = 3.64e-12
Identity = 51/97 (52.58%), Postives = 64/97 (65.98%), Query Frame = 0
Query: 25 HIEDEDDDPFDYDHIEDENEDDDPLRCDRIKDEDDNPLRCCIEDDDEDDDPLDCGALKTK 84
HI+DED+DPF IEDE+EDD PL C+RI+DED D+P D LK K
Sbjct: 21 HIKDEDEDPFSCGRIEDEDEDD-PLDCNRIEDED-------------KDNPFDTIVLKAK 80
Query: 85 MKMMILLVAAILKMKMNMILSVAVALKTKMKIILSTA 121
MKM++ +V A LKMKMNM+L A+ LKTKM++IL A
Sbjct: 81 MKMILSVVVA-LKMKMNMVLLAAIELKTKMQMILLAA 102
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3BA49 | 1.2e-59 | 100.00 | Calsequestrin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110... | [more] |
A0A1S4E042 | 1.2e-59 | 100.00 | calsequestrin-1-like OS=Cucumis melo OX=3656 GN=LOC107991299 PE=4 SV=1 | [more] |
A0A5D3DSX1 | 1.3e-13 | 46.58 | Prostatic spermine-binding protein-like OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |
A0A5A7SX67 | 2.1e-11 | 51.85 | Prostatic spermine-binding protein-like OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |
A0A1S3CK92 | 2.1e-11 | 48.39 | prostatic spermine-binding protein-like OS=Cucumis melo OX=3656 GN=LOC103501754 ... | [more] |
Match Name | E-value | Identity | Description | |
XP_016901598.1 | 6.13e-80 | 100.00 | PREDICTED: calsequestrin-1-like [Cucumis melo] >KAA0063470.1 calsequestrin-1-lik... | [more] |
KAA0047489.1 | 2.45e-18 | 46.58 | prostatic spermine-binding protein-like [Cucumis melo var. makuwa] >TYK26455.1 p... | [more] |
KAA0035630.1 | 4.09e-16 | 51.85 | prostatic spermine-binding protein-like [Cucumis melo var. makuwa] >TYK30912.1 p... | [more] |
XP_008463661.1 | 2.89e-15 | 51.85 | PREDICTED: prostatic spermine-binding protein-like [Cucumis melo] | [more] |
KAA0033095.1 | 3.64e-12 | 52.58 | calsequestrin-1-like [Cucumis melo var. makuwa] >TYK17137.1 calsequestrin-1-like... | [more] |
Match Name | E-value | Identity | Description | |