IVF0022122.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0022122.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	calsequestrin-1-like
Location	chr04: 8927457 .. 8927834 (+)
Sequence length	378
RNA-Seq Expression	IVF0022122.1
Synteny	IVF0022122.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATGAGGATGATGATCCTATCAGCTGCGGCCACATTGAAGATAAAAATGTTCATTTCGGTTGCGACCACATTGAAGATGAAGATGATGATCCTTTCGACTACGATCATATTGAAGACGAAAATGAAGATGATGATCCTCTTCGTTGCGATCGCATTAAAGATGAAGATGATAATCCTCTCCGCTGCTGCATTGAAGACGATGATGAAGATGATGATCCTCTGGATTGCGGTGCATTGAAGACAAAGATGAAAATGATGATCCTCTTGGTTGCGGCTATATTGAAGATGAAGATGAACATGATCCTCTCGGTTGCGGTCGCATTGAAGACGAAGATGAAAATAATCCTCTCGACTGCAAAACATCAGAGATGA

mRNA sequence

ATGGAAGATGAGGATGATGATCCTATCAGCTGCGGCCACATTGAAGATAAAAATGTTCATTTCGGTTGCGACCACATTGAAGATGAAGATGATGATCCTTTCGACTACGATCATATTGAAGACGAAAATGAAGATGATGATCCTCTTCGTTGCGATCGCATTAAAGATGAAGATGATAATCCTCTCCGCTGCTGCATTGAAGACGATGATGAAGATGATGATCCTCTGGATTGCGGTGCATTGAAGACAAAGATGAAAATGATGATCCTCTTGGTTGCGGCTATATTGAAGATGAAGATGAACATGATCCTCTCGGTTGCGGTCGCATTGAAGACGAAGATGAAAATAATCCTCTCGACTGCAAAACATCAGAGATGA

Coding sequence (CDS)

ATGGAAGATGAGGATGATGATCCTATCAGCTGCGGCCACATTGAAGATAAAAATGTTCATTTCGGTTGCGACCACATTGAAGATGAAGATGATGATCCTTTCGACTACGATCATATTGAAGACGAAAATGAAGATGATGATCCTCTTCGTTGCGATCGCATTAAAGATGAAGATGATAATCCTCTCCGCTGCTGCATTGAAGACGATGATGAAGATGATGATCCTCTGGATTGCGGTGCATTGAAGACAAAGATGAAAATGATGATCCTCTTGGTTGCGGCTATATTGAAGATGAAGATGAACATGATCCTCTCGGTTGCGGTCGCATTGAAGACGAAGATGAAAATAATCCTCTCGACTGCAAAACATCAGAGATGA

Protein sequence

MEDEDDDPISCGHIEDKNVHFGCDHIEDEDDDPFDYDHIEDENEDDDPLRCDRIKDEDDNPLRCCIEDDDEDDDPLDCGALKTKMKMMILLVAAILKMKMNMILSVAVALKTKMKIILSTAKHQR

Homology

[Close]

BLAST of IVF0022122.1 vs. ExPASy TrEMBL
Match: A0A5D3BA49 (Calsequestrin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G00130 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.2e-59
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MEDEDDDPISCGHIEDKNVHFGCDHIEDEDDDPFDYDHIEDENEDDDPLRCDRIKDEDDN 60
           MEDEDDDPISCGHIEDKNVHFGCDHIEDEDDDPFDYDHIEDENEDDDPLRCDRIKDEDDN
Sbjct: 1   MEDEDDDPISCGHIEDKNVHFGCDHIEDEDDDPFDYDHIEDENEDDDPLRCDRIKDEDDN 60

Query: 61  PLRCCIEDDDEDDDPLDCGALKTKMKMMILLVAAILKMKMNMILSVAVALKTKMKIILST 120
           PLRCCIEDDDEDDDPLDCGALKTKMKMMILLVAAILKMKMNMILSVAVALKTKMKIILST
Sbjct: 61  PLRCCIEDDDEDDDPLDCGALKTKMKMMILLVAAILKMKMNMILSVAVALKTKMKIILST 120

Query: 121 AKHQR 126
           AKHQR
Sbjct: 121 AKHQR 125

[Close]

BLAST of IVF0022122.1 vs. ExPASy TrEMBL
Match: A0A1S4E042 (calsequestrin-1-like OS=Cucumis melo OX=3656 GN=LOC107991299 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.2e-59
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MEDEDDDPISCGHIEDKNVHFGCDHIEDEDDDPFDYDHIEDENEDDDPLRCDRIKDEDDN 60
           MEDEDDDPISCGHIEDKNVHFGCDHIEDEDDDPFDYDHIEDENEDDDPLRCDRIKDEDDN
Sbjct: 1   MEDEDDDPISCGHIEDKNVHFGCDHIEDEDDDPFDYDHIEDENEDDDPLRCDRIKDEDDN 60

Query: 61  PLRCCIEDDDEDDDPLDCGALKTKMKMMILLVAAILKMKMNMILSVAVALKTKMKIILST 120
           PLRCCIEDDDEDDDPLDCGALKTKMKMMILLVAAILKMKMNMILSVAVALKTKMKIILST
Sbjct: 61  PLRCCIEDDDEDDDPLDCGALKTKMKMMILLVAAILKMKMNMILSVAVALKTKMKIILST 120

Query: 121 AKHQR 126
           AKHQR
Sbjct: 121 AKHQR 125

[Close]

BLAST of IVF0022122.1 vs. ExPASy TrEMBL
Match: A0A5D3DSX1 (Prostatic spermine-binding protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00120 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.3e-13
Identity = 75/161 (46.58%), Postives = 89/161 (55.28%), Query Frame = 0


Query: 1   MEDEDDDPISCGHIEDKNVH--------------FGCDHIEDEDDDPFDYDHIED----- 60
           +E E+DDP+ CGHIED+N                  C+  +DEDDDP +  +IED     
Sbjct: 64  IEGENDDPLGCGHIEDENGDPLDCKCIKYEDDDPLDCECFKDEDDDPLNCRYIEDEDDED 123

Query: 61  ---------ENEDDDPLRCDRIKDEDDNPLRCC-IEDD---------DEDDDPLDCGALK 120
                    E+EDDDPL CD I+DED+N L C  I+DD         DEDDDP    ALK
Sbjct: 124 DDLISCVHIEDEDDDPLGCDHIEDEDNNSLDCSRIKDDDSIDYERIKDEDDDPSAVVALK 183

Query: 121 TKMKMMILLVAAILKMKMNMILSVAVALKTKMKIILSTAKH 124
            KMKMM+L VA  LKMKM MILS +V LK     ILST  H
Sbjct: 184 -KMKMMVLSVAIALKMKM-MILSTSVVLKKMKMKILSTVTH 222

[Close]

BLAST of IVF0022122.1 vs. ExPASy TrEMBL
Match: A0A5A7SX67 (Prostatic spermine-binding protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001230 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.1e-11
Identity = 56/108 (51.85%), Postives = 64/108 (59.26%), Query Frame = 0


Query: 3   DEDDDPISCGHIEDKNVHFGCD--HIEDED-DDPFDYDHIEDENEDDDPLRCDRIKDED- 62
           +++DDP  CG+IED+      D   IEDED DDP  YD IEDENED DP  C  I+DED 
Sbjct: 10  EDEDDPFGCGNIEDEGKDDTLDFLRIEDEDEDDPLGYDIIEDENEDHDPFGCGNIEDEDK 69

Query: 63  DNPLRC-------------CIEDDDEDDDPLDCGALKTKMKMMILLVA 94
           D+PL C             C   +DEDDDPL C  LK KM MMILL A
Sbjct: 70  DDPLDCGYIEDEDEDDPLDCNSIEDEDDDPLSCNTLKMKMMMMILLAA 117

[Close]

BLAST of IVF0022122.1 vs. ExPASy TrEMBL
Match: A0A1S3CK92 (prostatic spermine-binding protein-like OS=Cucumis melo OX=3656 GN=LOC103501754 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.1e-11
Identity = 60/124 (48.39%), Postives = 69/124 (55.65%), Query Frame = 0


Query: 2   EDED-DDPISCGHI--EDKNVHFGCDHIEDE---------------DDDPFDYDHIEDEN 61
           ED+D DDP+SC  I  ED++  FGC +IEDE               +DDP  YD IEDEN
Sbjct: 81  EDKDEDDPLSCSDIEYEDEDDPFGCGNIEDEGKDDTLDFLRIEDEDEDDPLGYDIIEDEN 140

Query: 62  EDDDPLRCDRIKDED-DNPLRC-------------CIEDDDEDDDPLDCGALKTKMKMMI 94
           ED DP  C  I+DED D+PL C             C   +DEDDDPL C  LK KM MMI
Sbjct: 141 EDHDPFGCGNIEDEDKDDPLDCGYIEDEDEDDPLDCNSIEDEDDDPLSCNTLKMKMMMMI 200

[Close]

BLAST of IVF0022122.1 vs. NCBI nr
Match: XP_016901598.1 (PREDICTED: calsequestrin-1-like [Cucumis melo] >KAA0063470.1 calsequestrin-1-like [Cucumis melo var. makuwa] >TYJ95756.1 calsequestrin-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 241 bits (614), Expect = 6.13e-80
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MEDEDDDPISCGHIEDKNVHFGCDHIEDEDDDPFDYDHIEDENEDDDPLRCDRIKDEDDN 60
           MEDEDDDPISCGHIEDKNVHFGCDHIEDEDDDPFDYDHIEDENEDDDPLRCDRIKDEDDN
Sbjct: 1   MEDEDDDPISCGHIEDKNVHFGCDHIEDEDDDPFDYDHIEDENEDDDPLRCDRIKDEDDN 60

Query: 61  PLRCCIEDDDEDDDPLDCGALKTKMKMMILLVAAILKMKMNMILSVAVALKTKMKIILST 120
           PLRCCIEDDDEDDDPLDCGALKTKMKMMILLVAAILKMKMNMILSVAVALKTKMKIILST
Sbjct: 61  PLRCCIEDDDEDDDPLDCGALKTKMKMMILLVAAILKMKMNMILSVAVALKTKMKIILST 120

Query: 121 AKHQR 125
           AKHQR
Sbjct: 121 AKHQR 125

[Close]

BLAST of IVF0022122.1 vs. NCBI nr
Match: KAA0047489.1 (prostatic spermine-binding protein-like [Cucumis melo var. makuwa] >TYK26455.1 prostatic spermine-binding protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 2.45e-18
Identity = 75/161 (46.58%), Postives = 89/161 (55.28%), Query Frame = 0


Query: 1   MEDEDDDPISCGHIEDKNVH--------------FGCDHIEDEDDDPFDYDHIEDEN--- 60
           +E E+DDP+ CGHIED+N                  C+  +DEDDDP +  +IEDE+   
Sbjct: 64  IEGENDDPLGCGHIEDENGDPLDCKCIKYEDDDPLDCECFKDEDDDPLNCRYIEDEDDED 123

Query: 61  -----------EDDDPLRCDRIKDEDDNPLRCC-IEDDD---------EDDDPLDCGALK 120
                      EDDDPL CD I+DED+N L C  I+DDD         EDDDP    ALK
Sbjct: 124 DDLISCVHIEDEDDDPLGCDHIEDEDNNSLDCSRIKDDDSIDYERIKDEDDDPSAVVALK 183

Query: 121 TKMKMMILLVAAILKMKMNMILSVAVALKTKMKIILSTAKH 123
            KMKMM+L VA  LKMKM MILS +V LK     ILST  H
Sbjct: 184 -KMKMMVLSVAIALKMKM-MILSTSVVLKKMKMKILSTVTH 222

[Close]

BLAST of IVF0022122.1 vs. NCBI nr
Match: KAA0035630.1 (prostatic spermine-binding protein-like [Cucumis melo var. makuwa] >TYK30912.1 prostatic spermine-binding protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 4.09e-16
Identity = 56/108 (51.85%), Postives = 64/108 (59.26%), Query Frame = 0


Query: 3   DEDDDPISCGHIEDKNVHFGCD--HIEDED-DDPFDYDHIEDENEDDDPLRCDRIKDED- 62
           +++DDP  CG+IED+      D   IEDED DDP  YD IEDENED DP  C  I+DED 
Sbjct: 10  EDEDDPFGCGNIEDEGKDDTLDFLRIEDEDEDDPLGYDIIEDENEDHDPFGCGNIEDEDK 69

Query: 63  DNPLRC-------------CIEDDDEDDDPLDCGALKTKMKMMILLVA 93
           D+PL C             C   +DEDDDPL C  LK KM MMILL A
Sbjct: 70  DDPLDCGYIEDEDEDDPLDCNSIEDEDDDPLSCNTLKMKMMMMILLAA 117

[Close]

BLAST of IVF0022122.1 vs. NCBI nr
Match: XP_008463661.1 (PREDICTED: prostatic spermine-binding protein-like [Cucumis melo])

HSP 1 Score: 79.3 bits (194), Expect = 2.89e-15
Identity = 56/108 (51.85%), Postives = 64/108 (59.26%), Query Frame = 0


Query: 3   DEDDDPISCGHIEDKNVHFGCD--HIEDED-DDPFDYDHIEDENEDDDPLRCDRIKDED- 62
           +++DDP  CG+IED+      D   IEDED DDP  YD IEDENED DP  C  I+DED 
Sbjct: 97  EDEDDPFGCGNIEDEGKDDTLDFLRIEDEDEDDPLGYDIIEDENEDHDPFGCGNIEDEDK 156

Query: 63  DNPLRC-------------CIEDDDEDDDPLDCGALKTKMKMMILLVA 93
           D+PL C             C   +DEDDDPL C  LK KM MMILL A
Sbjct: 157 DDPLDCGYIEDEDEDDPLDCNSIEDEDDDPLSCNTLKMKMMMMILLAA 204

[Close]

BLAST of IVF0022122.1 vs. NCBI nr
Match: KAA0033095.1 (calsequestrin-1-like [Cucumis melo var. makuwa] >TYK17137.1 calsequestrin-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 3.64e-12
Identity = 51/97 (52.58%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 25  HIEDEDDDPFDYDHIEDENEDDDPLRCDRIKDEDDNPLRCCIEDDDEDDDPLDCGALKTK 84
           HI+DED+DPF    IEDE+EDD PL C+RI+DED              D+P D   LK K
Sbjct: 21  HIKDEDEDPFSCGRIEDEDEDD-PLDCNRIEDED-------------KDNPFDTIVLKAK 80

Query: 85  MKMMILLVAAILKMKMNMILSVAVALKTKMKIILSTA 121
           MKM++ +V A LKMKMNM+L  A+ LKTKM++IL  A
Sbjct: 81  MKMILSVVVA-LKMKMNMVLLAAIELKTKMQMILLAA 102

The following BLAST results are available for this feature:

BLAST of IVF0022122.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0022122.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BA49	1.2e-59	100.00	Calsequestrin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110...	[more]
A0A1S4E042	1.2e-59	100.00	calsequestrin-1-like OS=Cucumis melo OX=3656 GN=LOC107991299 PE=4 SV=1	[more]
A0A5D3DSX1	1.3e-13	46.58	Prostatic spermine-binding protein-like OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7SX67	2.1e-11	51.85	Prostatic spermine-binding protein-like OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3CK92	2.1e-11	48.39	prostatic spermine-binding protein-like OS=Cucumis melo OX=3656 GN=LOC103501754 ...	[more]

BLAST of IVF0022122.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901598.1	6.13e-80	100.00	PREDICTED: calsequestrin-1-like [Cucumis melo] >KAA0063470.1 calsequestrin-1-lik...	[more]
KAA0047489.1	2.45e-18	46.58	prostatic spermine-binding protein-like [Cucumis melo var. makuwa] >TYK26455.1 p...	[more]
KAA0035630.1	4.09e-16	51.85	prostatic spermine-binding protein-like [Cucumis melo var. makuwa] >TYK30912.1 p...	[more]
XP_008463661.1	2.89e-15	51.85	PREDICTED: prostatic spermine-binding protein-like [Cucumis melo]	[more]
KAA0033095.1	3.64e-12	52.58	calsequestrin-1-like [Cucumis melo var. makuwa] >TYK17137.1 calsequestrin-1-like...	[more]

BLAST of IVF0022122.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..47

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0022122	IVF0022122	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0022122.1-exon	IVF0022122.1-exon-chr04:8927457..8927834	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0022122.1-cds	IVF0022122.1-cds-chr04:8927457..8927834	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0022122.1	IVF0022122.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane