Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTGTTGTCTGTTACATAATCTTATCAAAAGAGAAATGACTAACAATGAAATAATCGATGATTTGGATGAGGGTGATTCAACATACGCAACAACTGGAGGTGACGAGATTAATTACATTGAGGCTTCAAACGAATGGAGTGAATTGAGGGATCAATTGGCTCATACGATGTTCAGTGATTGGGAGTTACGTGACCAATAG
mRNA sequence
ATGGCGTGTTGTCTGTTACATAATCTTATCAAAAGAGAAATGACTAACAATGAAATAATCGATGATTTGGATGAGGGTGATTCAACATACGCAACAACTGGAGGTGACGAGATTAATTACATTGAGGCTTCAAACGAATGGAGTGAATTGAGGGATCAATTGGCTCATACGATGTTCAGTGATTGGGAGTTACGTGACCAATAG
Coding sequence (CDS)
ATGGCGTGTTGTCTGTTACATAATCTTATCAAAAGAGAAATGACTAACAATGAAATAATCGATGATTTGGATGAGGGTGATTCAACATACGCAACAACTGGAGGTGACGAGATTAATTACATTGAGGCTTCAAACGAATGGAGTGAATTGAGGGATCAATTGGCTCATACGATGTTCAGTGATTGGGAGTTACGTGACCAATAG
Protein sequence
MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFSDWELRDQ
Homology
BLAST of IVF0022026 vs. ExPASy TrEMBL
Match:
A0A5D3CDG6 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002070 PE=3 SV=1)
HSP 1 Score: 142.1 bits (357), Expect = 8.3e-31
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0
Query: 1 MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 60
MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS
Sbjct: 182 MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 241
Query: 61 DWELRDQ 68
DWELRDQ
Sbjct: 242 DWELRDQ 248
BLAST of IVF0022026 vs. ExPASy TrEMBL
Match:
A0A5A7U0J9 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G002560 PE=3 SV=1)
HSP 1 Score: 142.1 bits (357), Expect = 8.3e-31
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0
Query: 1 MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 60
MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS
Sbjct: 182 MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 241
Query: 61 DWELRDQ 68
DWELRDQ
Sbjct: 242 DWELRDQ 248
BLAST of IVF0022026 vs. ExPASy TrEMBL
Match:
A0A1S3B4J8 (uncharacterized protein LOC103485952 OS=Cucumis melo OX=3656 GN=LOC103485952 PE=3 SV=1)
HSP 1 Score: 142.1 bits (357), Expect = 8.3e-31
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0
Query: 1 MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 60
MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS
Sbjct: 182 MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 241
Query: 61 DWELRDQ 68
DWELRDQ
Sbjct: 242 DWELRDQ 248
BLAST of IVF0022026 vs. ExPASy TrEMBL
Match:
A0A5A7TJS2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00710 PE=4 SV=1)
HSP 1 Score: 134.4 bits (337), Expect = 1.7e-28
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 0
Query: 1 MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 60
MACCLLHNLI REMTN+EIIDDLDEGDSTYATTGGDEINYIE SNEWSELRDQLA+TMFS
Sbjct: 105 MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFS 164
Query: 61 DWELRDQ 68
DWELRDQ
Sbjct: 165 DWELRDQ 171
BLAST of IVF0022026 vs. ExPASy TrEMBL
Match:
A0A5D3D8J6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold307G00030 PE=4 SV=1)
HSP 1 Score: 134.4 bits (337), Expect = 1.7e-28
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 0
Query: 1 MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 60
MACCLLHNLI REMTN+EIIDDLDEGDSTYATTGGDEINYIE SNEWSELRDQLA+TMFS
Sbjct: 105 MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFS 164
Query: 61 DWELRDQ 68
DWELRDQ
Sbjct: 165 DWELRDQ 171
BLAST of IVF0022026 vs. NCBI nr
Match:
XP_008441953.1 (PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo] >KAA0047737.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])
HSP 1 Score: 143 bits (361), Expect = 7.39e-41
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0
Query: 1 MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 60
MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS
Sbjct: 182 MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 241
Query: 61 DWELRDQ 67
DWELRDQ
Sbjct: 242 DWELRDQ 248
BLAST of IVF0022026 vs. NCBI nr
Match:
TYK08389.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])
HSP 1 Score: 143 bits (361), Expect = 7.39e-41
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0
Query: 1 MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 60
MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS
Sbjct: 182 MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 241
Query: 61 DWELRDQ 67
DWELRDQ
Sbjct: 242 DWELRDQ 248
BLAST of IVF0022026 vs. NCBI nr
Match:
KAA0043564.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 135 bits (341), Expect = 9.38e-37
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 0
Query: 1 MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 60
MACCLLHNLI REMTN+EIIDDLDEGDSTYATTGGDEINYIE SNEWSELRDQLA+TMFS
Sbjct: 105 MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFS 164
Query: 61 DWELRDQ 67
DWELRDQ
Sbjct: 165 DWELRDQ 171
BLAST of IVF0022026 vs. NCBI nr
Match:
KAA0063753.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK05505.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])
HSP 1 Score: 132 bits (331), Expect = 2.34e-36
Identity = 62/67 (92.54%), Postives = 63/67 (94.03%), Query Frame = 0
Query: 1 MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 60
MACCLLHNLI REMTN+EIIDDLDE DSTYATTGGDEINYIEASNEWSE RDQLAHTMFS
Sbjct: 180 MACCLLHNLINREMTNSEIIDDLDEADSTYATTGGDEINYIEASNEWSEWRDQLAHTMFS 239
Query: 61 DWELRDQ 67
DWEL DQ
Sbjct: 240 DWELCDQ 246
BLAST of IVF0022026 vs. NCBI nr
Match:
TYK19779.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 135 bits (341), Expect = 1.42e-35
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 0
Query: 1 MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 60
MACCLLHNLI REMTN+EIIDDLDEGDSTYATTGGDEINYIE SNEWSELRDQLA+TMFS
Sbjct: 105 MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFS 164
Query: 61 DWELRDQ 67
DWELRDQ
Sbjct: 165 DWELRDQ 171
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3CDG6 | 8.3e-31 | 100.00 | Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... | [more] |
| A0A5A7U0J9 | 8.3e-31 | 100.00 | Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... | [more] |
| A0A1S3B4J8 | 8.3e-31 | 100.00 | uncharacterized protein LOC103485952 OS=Cucumis melo OX=3656 GN=LOC103485952 PE=... | [more] |
| A0A5A7TJS2 | 1.7e-28 | 94.03 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5D3D8J6 | 1.7e-28 | 94.03 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_008441953.1 | 7.39e-41 | 100.00 | PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo] >KAA0047737.1 put... | [more] |
| TYK08389.1 | 7.39e-41 | 100.00 | putative nuclease HARBI1 [Cucumis melo var. makuwa] | [more] |
| KAA0043564.1 | 9.38e-37 | 94.03 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0063753.1 | 2.34e-36 | 92.54 | putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK05505.1 putative nucleas... | [more] |
| TYK19779.1 | 1.42e-35 | 94.03 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
