IVF0022026.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0022026.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr05: 17601248 .. 17601451 (+)
Sequence length	204
RNA-Seq Expression	IVF0022026.1
Synteny	IVF0022026.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTGTTGTCTGTTACATAATCTTATCAAAAGAGAAATGACTAACAATGAAATAATCGATGATTTGGATGAGGGTGATTCAACATACGCAACAACTGGAGGTGACGAGATTAATTACATTGAGGCTTCAAACGAATGGAGTGAATTGAGGGATCAATTGGCTCATACGATGTTCAGTGATTGGGAGTTACGTGACCAATAG

mRNA sequence

ATGGCGTGTTGTCTGTTACATAATCTTATCAAAAGAGAAATGACTAACAATGAAATAATCGATGATTTGGATGAGGGTGATTCAACATACGCAACAACTGGAGGTGACGAGATTAATTACATTGAGGCTTCAAACGAATGGAGTGAATTGAGGGATCAATTGGCTCATACGATGTTCAGTGATTGGGAGTTACGTGACCAATAG

Coding sequence (CDS)

ATGGCGTGTTGTCTGTTACATAATCTTATCAAAAGAGAAATGACTAACAATGAAATAATCGATGATTTGGATGAGGGTGATTCAACATACGCAACAACTGGAGGTGACGAGATTAATTACATTGAGGCTTCAAACGAATGGAGTGAATTGAGGGATCAATTGGCTCATACGATGTTCAGTGATTGGGAGTTACGTGACCAATAG

Protein sequence

MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFSDWELRDQ

Homology

[Close]

BLAST of IVF0022026.1 vs. ExPASy TrEMBL
Match: A0A5D3CDG6 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002070 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 8.3e-31
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1   MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 60
           MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS
Sbjct: 182 MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 241

Query: 61  DWELRDQ 68
           DWELRDQ
Sbjct: 242 DWELRDQ 248

[Close]

BLAST of IVF0022026.1 vs. ExPASy TrEMBL
Match: A0A5A7U0J9 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G002560 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 8.3e-31
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1   MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 60
           MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS
Sbjct: 182 MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 241

Query: 61  DWELRDQ 68
           DWELRDQ
Sbjct: 242 DWELRDQ 248

[Close]

BLAST of IVF0022026.1 vs. ExPASy TrEMBL
Match: A0A1S3B4J8 (uncharacterized protein LOC103485952 OS=Cucumis melo OX=3656 GN=LOC103485952 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 8.3e-31
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1   MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 60
           MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS
Sbjct: 182 MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 241

Query: 61  DWELRDQ 68
           DWELRDQ
Sbjct: 242 DWELRDQ 248

[Close]

BLAST of IVF0022026.1 vs. ExPASy TrEMBL
Match: A0A5A7TJS2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00710 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.7e-28
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1   MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 60
           MACCLLHNLI REMTN+EIIDDLDEGDSTYATTGGDEINYIE SNEWSELRDQLA+TMFS
Sbjct: 105 MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFS 164

Query: 61  DWELRDQ 68
           DWELRDQ
Sbjct: 165 DWELRDQ 171

[Close]

BLAST of IVF0022026.1 vs. ExPASy TrEMBL
Match: A0A5D3D8J6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold307G00030 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.7e-28
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1   MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 60
           MACCLLHNLI REMTN+EIIDDLDEGDSTYATTGGDEINYIE SNEWSELRDQLA+TMFS
Sbjct: 105 MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFS 164

Query: 61  DWELRDQ 68
           DWELRDQ
Sbjct: 165 DWELRDQ 171

[Close]

BLAST of IVF0022026.1 vs. NCBI nr
Match: XP_008441953.1 (PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo] >KAA0047737.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 143 bits (361), Expect = 7.39e-41
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1   MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 60
           MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS
Sbjct: 182 MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 241

Query: 61  DWELRDQ 67
           DWELRDQ
Sbjct: 242 DWELRDQ 248

[Close]

BLAST of IVF0022026.1 vs. NCBI nr
Match: TYK08389.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 143 bits (361), Expect = 7.39e-41
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1   MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 60
           MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS
Sbjct: 182 MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 241

Query: 61  DWELRDQ 67
           DWELRDQ
Sbjct: 242 DWELRDQ 248

[Close]

BLAST of IVF0022026.1 vs. NCBI nr
Match: KAA0043564.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 135 bits (341), Expect = 9.38e-37
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1   MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 60
           MACCLLHNLI REMTN+EIIDDLDEGDSTYATTGGDEINYIE SNEWSELRDQLA+TMFS
Sbjct: 105 MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFS 164

Query: 61  DWELRDQ 67
           DWELRDQ
Sbjct: 165 DWELRDQ 171

[Close]

BLAST of IVF0022026.1 vs. NCBI nr
Match: KAA0063753.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK05505.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 132 bits (331), Expect = 2.34e-36
Identity = 62/67 (92.54%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1   MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 60
           MACCLLHNLI REMTN+EIIDDLDE DSTYATTGGDEINYIEASNEWSE RDQLAHTMFS
Sbjct: 180 MACCLLHNLINREMTNSEIIDDLDEADSTYATTGGDEINYIEASNEWSEWRDQLAHTMFS 239

Query: 61  DWELRDQ 67
           DWEL DQ
Sbjct: 240 DWELCDQ 246

[Close]

BLAST of IVF0022026.1 vs. NCBI nr
Match: TYK19779.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 135 bits (341), Expect = 1.42e-35
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1   MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 60
           MACCLLHNLI REMTN+EIIDDLDEGDSTYATTGGDEINYIE SNEWSELRDQLA+TMFS
Sbjct: 105 MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFS 164

Query: 61  DWELRDQ 67
           DWELRDQ
Sbjct: 165 DWELRDQ 171

The following BLAST results are available for this feature:

BLAST of IVF0022026.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0022026.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CDG6	8.3e-31	100.00	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7U0J9	8.3e-31	100.00	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A1S3B4J8	8.3e-31	100.00	uncharacterized protein LOC103485952 OS=Cucumis melo OX=3656 GN=LOC103485952 PE=...	[more]
A0A5A7TJS2	1.7e-28	94.03	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3D8J6	1.7e-28	94.03	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0022026.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441953.1	7.39e-41	100.00	PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo] >KAA0047737.1 put...	[more]
TYK08389.1	7.39e-41	100.00	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
KAA0043564.1	9.38e-37	94.03	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0063753.1	2.34e-36	92.54	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK05505.1 putative nucleas...	[more]
TYK19779.1	1.42e-35	94.03	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0022026.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0022026	IVF0022026	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0022026.1-exon	IVF0022026.1-exon-chr05:17601248..17601451	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0022026.1-cds	IVF0022026.1-cds-chr05:17601248..17601451	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0022026.1	IVF0022026.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding