Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGAGCTCAAGGACTTTCGGTAATCTTCCCAAGAAAACGGGCGCGAGAAAGCCCCAGATTCAGTTTTCTCATGCTGGGGTAAAAAGCGGTCACCCAACGGTTTCTTCCCTTTTGCTTCGTATTATTTGTCTTTTGATGTTCGGGGCTCCTAACCCGACGAATTCAACGCACACTCCTGACATGCTCTCTCACACGTTGTCCTATGGTATAGGTCGTGAAGCCAGCTCGTTGGAGGAAGAACTATGGTGCGACCCTAAACGATCCAAAAGTTGGCTAATGCTTCAAACGAGTGGCGGACGCTCGTCCGATGTCAGAAACCACTGGAAATGCACTTGTAACGAAAGAAACAAGCTGATGTCGAGGACTTCTGGTGTTCGTCCCAGGAAAACGCAAGCGAGAATACCCCACACTTAG
mRNA sequence
ATGCTGAGCTCAAGGACTTTCGGTAATCTTCCCAAGAAAACGGGCGCGAGAAAGCCCCAGATTCAGTTTTCTCATGCTGGGGTAAAAAGCGGTCACCCAACGGTTTCTTCCCTTTTGCTTCGTATTATTTGTCTTTTGATGTTCGGGGCTCCTAACCCGACGAATTCAACGCACACTCCTGACATGCTCTCTCACACGTTGTCCTATGGTATAGGTCGTGAAGCCAGCTCGTTGGAGGAAGAACTATGGTGCGACCCTAAACGATCCAAAAGTTGGCTAATGCTTCAAACGAGTGGCGGACGCTCGTCCGATGTCAGAAACCACTGGAAATGCACTTGTAACGAAAGAAACAAGCTGATGTCGAGGACTTCTGGTGTTCGTCCCAGGAAAACGCAAGCGAGAATACCCCACACTTAG
Coding sequence (CDS)
ATGCTGAGCTCAAGGACTTTCGGTAATCTTCCCAAGAAAACGGGCGCGAGAAAGCCCCAGATTCAGTTTTCTCATGCTGGGGTAAAAAGCGGTCACCCAACGGTTTCTTCCCTTTTGCTTCGTATTATTTGTCTTTTGATGTTCGGGGCTCCTAACCCGACGAATTCAACGCACACTCCTGACATGCTCTCTCACACGTTGTCCTATGGTATAGGTCGTGAAGCCAGCTCGTTGGAGGAAGAACTATGGTGCGACCCTAAACGATCCAAAAGTTGGCTAATGCTTCAAACGAGTGGCGGACGCTCGTCCGATGTCAGAAACCACTGGAAATGCACTTGTAACGAAAGAAACAAGCTGATGTCGAGGACTTCTGGTGTTCGTCCCAGGAAAACGCAAGCGAGAATACCCCACACTTAG
Protein sequence
MLSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSLLLRIICLLMFGAPNPTNSTHTPDMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKLMSRTSGVRPRKTQARIPHT
Homology
BLAST of IVF0020670 vs. ExPASy TrEMBL
Match:
A0A5D3DIF8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00100 PE=4 SV=1)
HSP 1 Score: 288.9 bits (738), Expect = 1.1e-74
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0
Query: 1 MLSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSLLLRIICLLMFGAPNPTNSTHTP 60
MLSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSLLLRIICLLMFGAPNPTNSTHTP
Sbjct: 639 MLSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSLLLRIICLLMFGAPNPTNSTHTP 698
Query: 61 DMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKLM 120
DMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKLM
Sbjct: 699 DMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKLM 758
Query: 121 SRTSGVRPRKTQARIPHT 139
SRTSGVRPRKTQARIPHT
Sbjct: 759 SRTSGVRPRKTQARIPHT 776
BLAST of IVF0020670 vs. ExPASy TrEMBL
Match:
A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)
HSP 1 Score: 147.1 bits (370), Expect = 5.3e-32
Identity = 81/138 (58.70%), Postives = 93/138 (67.39%), Query Frame = 0
Query: 2 LSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSL-LLRIICLLMFGAPNPTNSTHTP 61
L+SRT G PKKT AR P+ QFS +G KS PTVSSL + +I L +F A P STHT
Sbjct: 1522 LNSRTSGASPKKTRARMPRSQFSRSGAKSDTPTVSSLCFVLVINLSIFEARTPRTSTHTT 1581
Query: 62 DMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKLM 121
ML S GIG+EASSLE ELWC+PKRSK W ML TS RSS +RNH KCT E N L
Sbjct: 1582 GMLPDMFSRGIGQEASSLEGELWCNPKRSKRWTMLPTSVERSSGIRNHLKCTRCEGNGLS 1641
Query: 122 SRTSGVRPRKTQARIPHT 139
SRT P+KT+AR+P T
Sbjct: 1642 SRTLSAHPKKTRARMPRT 1659
BLAST of IVF0020670 vs. ExPASy TrEMBL
Match:
A0A5D3DFP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00220 PE=4 SV=1)
HSP 1 Score: 136.0 bits (341), Expect = 1.2e-28
Identity = 86/185 (46.49%), Postives = 91/185 (49.19%), Query Frame = 0
Query: 2 LSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSLLLRII-CLLMFGAPNPTNSTHTP 61
LSSRT G PKKT AR PQ QFS G KS PTVS+L ++ L +FGAP P STHTP
Sbjct: 282 LSSRTSGARPKKTRARMPQTQFSRPGPKSDPPTVSTLCSVLVRSLSIFGAPTPRTSTHTP 341
Query: 62 DMLSHTLSY--------------------------------------------------- 121
ML T S
Sbjct: 342 GMLPDTFSERECPRLSFLVLGKLWSPDGFFPLLRIGHKSVDLRGSTPRTSTHTSGMLPDT 401
Query: 122 ---GIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKLMSRTSGV 132
GIGREASSLE EL CDPK SK W ML T G RSS RNHWKCTC+E N L SRTSG
Sbjct: 402 FSGGIGREASSLEGELLCDPKPSKRWPMLPTGGERSSGFRNHWKCTCSEGNGLSSRTSGA 461
BLAST of IVF0020670 vs. ExPASy TrEMBL
Match:
A0A5A7VGB1 (Mitochondrial intermembrane space import and assembly protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G001130 PE=4 SV=1)
HSP 1 Score: 117.1 bits (292), Expect = 5.9e-23
Identity = 57/79 (72.15%), Postives = 60/79 (75.95%), Query Frame = 0
Query: 60 PDMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKL 119
P ML T S GIGREASSLE ELWCDPKRSK W L TSG RSS VRNHWKCTC+E N L
Sbjct: 177 PGMLPDTFSGGIGREASSLEGELWCDPKRSKRWPKLPTSGERSSGVRNHWKCTCSEGNGL 236
Query: 120 MSRTSGVRPRKTQARIPHT 139
SRTSG RP+KT A +P T
Sbjct: 237 SSRTSGARPKKTPAGMPRT 255
BLAST of IVF0020670 vs. ExPASy TrEMBL
Match:
A0A5A7V368 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1799G00060 PE=4 SV=1)
HSP 1 Score: 115.9 bits (289), Expect = 1.3e-22
Identity = 59/97 (60.82%), Postives = 66/97 (68.04%), Query Frame = 0
Query: 42 IICLLMFGAPNPTNSTHTPDMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGGR 101
+I L +F A STHT ML H + GIGREASSLE ELW DPKR K W ML TSG R
Sbjct: 26 VISLSIFEARTLRTSTHTSGMLPHMFTQGIGREASSLEGELWFDPKRFKRWPMLATSGER 85
Query: 102 SSDVRNHWKCTCNERNKLMSRTSGVRPRKTQARIPHT 139
S VRNHWKCTC+ N+L SRTSGV P KT+ R+ T
Sbjct: 86 LSGVRNHWKCTCSGANRLSSRTSGVCPMKTRPRMSRT 122
BLAST of IVF0020670 vs. NCBI nr
Match:
TYK23424.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 287 bits (735), Expect = 4.17e-90
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0
Query: 1 MLSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSLLLRIICLLMFGAPNPTNSTHTP 60
MLSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSLLLRIICLLMFGAPNPTNSTHTP
Sbjct: 639 MLSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSLLLRIICLLMFGAPNPTNSTHTP 698
Query: 61 DMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKLM 120
DMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKLM
Sbjct: 699 DMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKLM 758
Query: 121 SRTSGVRPRKTQARIPHT 138
SRTSGVRPRKTQARIPHT
Sbjct: 759 SRTSGVRPRKTQARIPHT 776
BLAST of IVF0020670 vs. NCBI nr
Match:
KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 145 bits (367), Expect = 2.45e-37
Identity = 81/138 (58.70%), Postives = 93/138 (67.39%), Query Frame = 0
Query: 2 LSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSL-LLRIICLLMFGAPNPTNSTHTP 61
L+SRT G PKKT AR P+ QFS +G KS PTVSSL + +I L +F A P STHT
Sbjct: 1522 LNSRTSGASPKKTRARMPRSQFSRSGAKSDTPTVSSLCFVLVINLSIFEARTPRTSTHTT 1581
Query: 62 DMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKLM 121
ML S GIG+EASSLE ELWC+PKRSK W ML TS RSS +RNH KCT E N L
Sbjct: 1582 GMLPDMFSRGIGQEASSLEGELWCNPKRSKRWTMLPTSVERSSGIRNHLKCTRCEGNGLS 1641
Query: 122 SRTSGVRPRKTQARIPHT 138
SRT P+KT+AR+P T
Sbjct: 1642 SRTLSAHPKKTRARMPRT 1659
BLAST of IVF0020670 vs. NCBI nr
Match:
TYK22521.1 (uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa])
HSP 1 Score: 134 bits (338), Expect = 1.20e-33
Identity = 86/185 (46.49%), Postives = 91/185 (49.19%), Query Frame = 0
Query: 2 LSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSLLLRII-CLLMFGAPNPTNSTHTP 61
LSSRT G PKKT AR PQ QFS G KS PTVS+L ++ L +FGAP P STHTP
Sbjct: 282 LSSRTSGARPKKTRARMPQTQFSRPGPKSDPPTVSTLCSVLVRSLSIFGAPTPRTSTHTP 341
Query: 62 DMLSHTLSY--------------------------------------------------- 121
ML T S
Sbjct: 342 GMLPDTFSERECPRLSFLVLGKLWSPDGFFPLLRIGHKSVDLRGSTPRTSTHTSGMLPDT 401
Query: 122 ---GIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKLMSRTSGV 131
GIGREASSLE EL CDPK SK W ML T G RSS RNHWKCTC+E N L SRTSG
Sbjct: 402 FSGGIGREASSLEGELLCDPKPSKRWPMLPTGGERSSGFRNHWKCTCSEGNGLSSRTSGA 461
BLAST of IVF0020670 vs. NCBI nr
Match:
KAA0061317.1 (hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa] >TYK14265.1 hypothetical protein E5676_scaffold1799G00060 [Cucumis melo var. makuwa])
HSP 1 Score: 115 bits (287), Expect = 1.50e-28
Identity = 59/97 (60.82%), Postives = 66/97 (68.04%), Query Frame = 0
Query: 42 IICLLMFGAPNPTNSTHTPDMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGGR 101
+I L +F A STHT ML H + GIGREASSLE ELW DPKR K W ML TSG R
Sbjct: 26 VISLSIFEARTLRTSTHTSGMLPHMFTQGIGREASSLEGELWFDPKRFKRWPMLATSGER 85
Query: 102 SSDVRNHWKCTCNERNKLMSRTSGVRPRKTQARIPHT 138
S VRNHWKCTC+ N+L SRTSGV P KT+ R+ T
Sbjct: 86 LSGVRNHWKCTCSGANRLSSRTSGVCPMKTRPRMSRT 122
BLAST of IVF0020670 vs. NCBI nr
Match:
KAA0066117.1 (mitochondrial intermembrane space import and assembly protein 40 [Cucumis melo var. makuwa])
HSP 1 Score: 116 bits (290), Expect = 2.05e-28
Identity = 61/96 (63.54%), Postives = 65/96 (67.71%), Query Frame = 0
Query: 43 ICLLMFGAPNPTNSTHTPDMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGGRS 102
+CL M AP ML T S GIGREASSLE ELWCDPKRSK W L TSG RS
Sbjct: 169 LCLRMEAAPG---------MLPDTFSGGIGREASSLEGELWCDPKRSKRWPKLPTSGERS 228
Query: 103 SDVRNHWKCTCNERNKLMSRTSGVRPRKTQARIPHT 138
S VRNHWKCTC+E N L SRTSG RP+KT A +P T
Sbjct: 229 SGVRNHWKCTCSEGNGLSSRTSGARPKKTPAGMPRT 255
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3DIF8 | 1.1e-74 | 100.00 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G0010... | [more] |
| A0A5A7V5J2 | 5.3e-32 | 58.70 | Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak... | [more] |
| A0A5D3DFP2 | 1.2e-28 | 46.49 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7VGB1 | 5.9e-23 | 72.15 | Mitochondrial intermembrane space import and assembly protein 40 OS=Cucumis melo... | [more] |
| A0A5A7V368 | 1.3e-22 | 60.82 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| TYK23424.1 | 4.17e-90 | 100.00 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
| KAA0062888.1 | 2.45e-37 | 58.70 | non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw... | [more] |
| TYK22521.1 | 1.20e-33 | 46.49 | uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa] | [more] |
| KAA0061317.1 | 1.50e-28 | 60.82 | hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa] >TYK142... | [more] |
| KAA0066117.1 | 2.05e-28 | 63.54 | mitochondrial intermembrane space import and assembly protein 40 [Cucumis melo v... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
