IVF0020670.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0020670.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag/pol protein
Location	chr04: 21888075 .. 21888491 (-)
Sequence length	417
RNA-Seq Expression	IVF0020670.1
Synteny	IVF0020670.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGAGCTCAAGGACTTTCGGTAATCTTCCCAAGAAAACGGGCGCGAGAAAGCCCCAGATTCAGTTTTCTCATGCTGGGGTAAAAAGCGGTCACCCAACGGTTTCTTCCCTTTTGCTTCGTATTATTTGTCTTTTGATGTTCGGGGCTCCTAACCCGACGAATTCAACGCACACTCCTGACATGCTCTCTCACACGTTGTCCTATGGTATAGGTCGTGAAGCCAGCTCGTTGGAGGAAGAACTATGGTGCGACCCTAAACGATCCAAAAGTTGGCTAATGCTTCAAACGAGTGGCGGACGCTCGTCCGATGTCAGAAACCACTGGAAATGCACTTGTAACGAAAGAAACAAGCTGATGTCGAGGACTTCTGGTGTTCGTCCCAGGAAAACGCAAGCGAGAATACCCCACACTTAG

mRNA sequence

ATGCTGAGCTCAAGGACTTTCGGTAATCTTCCCAAGAAAACGGGCGCGAGAAAGCCCCAGATTCAGTTTTCTCATGCTGGGGTAAAAAGCGGTCACCCAACGGTTTCTTCCCTTTTGCTTCGTATTATTTGTCTTTTGATGTTCGGGGCTCCTAACCCGACGAATTCAACGCACACTCCTGACATGCTCTCTCACACGTTGTCCTATGGTATAGGTCGTGAAGCCAGCTCGTTGGAGGAAGAACTATGGTGCGACCCTAAACGATCCAAAAGTTGGCTAATGCTTCAAACGAGTGGCGGACGCTCGTCCGATGTCAGAAACCACTGGAAATGCACTTGTAACGAAAGAAACAAGCTGATGTCGAGGACTTCTGGTGTTCGTCCCAGGAAAACGCAAGCGAGAATACCCCACACTTAG

Coding sequence (CDS)

ATGCTGAGCTCAAGGACTTTCGGTAATCTTCCCAAGAAAACGGGCGCGAGAAAGCCCCAGATTCAGTTTTCTCATGCTGGGGTAAAAAGCGGTCACCCAACGGTTTCTTCCCTTTTGCTTCGTATTATTTGTCTTTTGATGTTCGGGGCTCCTAACCCGACGAATTCAACGCACACTCCTGACATGCTCTCTCACACGTTGTCCTATGGTATAGGTCGTGAAGCCAGCTCGTTGGAGGAAGAACTATGGTGCGACCCTAAACGATCCAAAAGTTGGCTAATGCTTCAAACGAGTGGCGGACGCTCGTCCGATGTCAGAAACCACTGGAAATGCACTTGTAACGAAAGAAACAAGCTGATGTCGAGGACTTCTGGTGTTCGTCCCAGGAAAACGCAAGCGAGAATACCCCACACTTAG

Protein sequence

MLSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSLLLRIICLLMFGAPNPTNSTHTPDMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKLMSRTSGVRPRKTQARIPHT

Homology

[Close]

BLAST of IVF0020670.1 vs. ExPASy TrEMBL
Match: A0A5D3DIF8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00100 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.1e-74
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MLSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSLLLRIICLLMFGAPNPTNSTHTP 60
           MLSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSLLLRIICLLMFGAPNPTNSTHTP
Sbjct: 639 MLSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSLLLRIICLLMFGAPNPTNSTHTP 698

Query: 61  DMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKLM 120
           DMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKLM
Sbjct: 699 DMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKLM 758

Query: 121 SRTSGVRPRKTQARIPHT 139
           SRTSGVRPRKTQARIPHT
Sbjct: 759 SRTSGVRPRKTQARIPHT 776

[Close]

BLAST of IVF0020670.1 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 5.3e-32
Identity = 81/138 (58.70%), Postives = 93/138 (67.39%), Query Frame = 0


Query: 2    LSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSL-LLRIICLLMFGAPNPTNSTHTP 61
            L+SRT G  PKKT AR P+ QFS +G KS  PTVSSL  + +I L +F A  P  STHT 
Sbjct: 1522 LNSRTSGASPKKTRARMPRSQFSRSGAKSDTPTVSSLCFVLVINLSIFEARTPRTSTHTT 1581

Query: 62   DMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKLM 121
             ML    S GIG+EASSLE ELWC+PKRSK W ML TS  RSS +RNH KCT  E N L 
Sbjct: 1582 GMLPDMFSRGIGQEASSLEGELWCNPKRSKRWTMLPTSVERSSGIRNHLKCTRCEGNGLS 1641

Query: 122  SRTSGVRPRKTQARIPHT 139
            SRT    P+KT+AR+P T
Sbjct: 1642 SRTLSAHPKKTRARMPRT 1659

[Close]

BLAST of IVF0020670.1 vs. ExPASy TrEMBL
Match: A0A5D3DFP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00220 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.2e-28
Identity = 86/185 (46.49%), Postives = 91/185 (49.19%), Query Frame = 0


Query: 2   LSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSLLLRII-CLLMFGAPNPTNSTHTP 61
           LSSRT G  PKKT AR PQ QFS  G KS  PTVS+L   ++  L +FGAP P  STHTP
Sbjct: 282 LSSRTSGARPKKTRARMPQTQFSRPGPKSDPPTVSTLCSVLVRSLSIFGAPTPRTSTHTP 341

Query: 62  DMLSHTLSY--------------------------------------------------- 121
            ML  T S                                                    
Sbjct: 342 GMLPDTFSERECPRLSFLVLGKLWSPDGFFPLLRIGHKSVDLRGSTPRTSTHTSGMLPDT 401

Query: 122 ---GIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKLMSRTSGV 132
              GIGREASSLE EL CDPK SK W ML T G RSS  RNHWKCTC+E N L SRTSG 
Sbjct: 402 FSGGIGREASSLEGELLCDPKPSKRWPMLPTGGERSSGFRNHWKCTCSEGNGLSSRTSGA 461

[Close]

BLAST of IVF0020670.1 vs. ExPASy TrEMBL
Match: A0A5A7VGB1 (Mitochondrial intermembrane space import and assembly protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G001130 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 5.9e-23
Identity = 57/79 (72.15%), Postives = 60/79 (75.95%), Query Frame = 0


Query: 60  PDMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKL 119
           P ML  T S GIGREASSLE ELWCDPKRSK W  L TSG RSS VRNHWKCTC+E N L
Sbjct: 177 PGMLPDTFSGGIGREASSLEGELWCDPKRSKRWPKLPTSGERSSGVRNHWKCTCSEGNGL 236

Query: 120 MSRTSGVRPRKTQARIPHT 139
            SRTSG RP+KT A +P T
Sbjct: 237 SSRTSGARPKKTPAGMPRT 255

[Close]

BLAST of IVF0020670.1 vs. ExPASy TrEMBL
Match: A0A5A7V368 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1799G00060 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.3e-22
Identity = 59/97 (60.82%), Postives = 66/97 (68.04%), Query Frame = 0


Query: 42  IICLLMFGAPNPTNSTHTPDMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGGR 101
           +I L +F A     STHT  ML H  + GIGREASSLE ELW DPKR K W ML TSG R
Sbjct: 26  VISLSIFEARTLRTSTHTSGMLPHMFTQGIGREASSLEGELWFDPKRFKRWPMLATSGER 85

Query: 102 SSDVRNHWKCTCNERNKLMSRTSGVRPRKTQARIPHT 139
            S VRNHWKCTC+  N+L SRTSGV P KT+ R+  T
Sbjct: 86  LSGVRNHWKCTCSGANRLSSRTSGVCPMKTRPRMSRT 122

[Close]

BLAST of IVF0020670.1 vs. NCBI nr
Match: TYK23424.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 287 bits (735), Expect = 4.17e-90
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MLSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSLLLRIICLLMFGAPNPTNSTHTP 60
           MLSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSLLLRIICLLMFGAPNPTNSTHTP
Sbjct: 639 MLSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSLLLRIICLLMFGAPNPTNSTHTP 698

Query: 61  DMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKLM 120
           DMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKLM
Sbjct: 699 DMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKLM 758

Query: 121 SRTSGVRPRKTQARIPHT 138
           SRTSGVRPRKTQARIPHT
Sbjct: 759 SRTSGVRPRKTQARIPHT 776

[Close]

BLAST of IVF0020670.1 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 145 bits (367), Expect = 2.45e-37
Identity = 81/138 (58.70%), Postives = 93/138 (67.39%), Query Frame = 0


Query: 2    LSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSL-LLRIICLLMFGAPNPTNSTHTP 61
            L+SRT G  PKKT AR P+ QFS +G KS  PTVSSL  + +I L +F A  P  STHT 
Sbjct: 1522 LNSRTSGASPKKTRARMPRSQFSRSGAKSDTPTVSSLCFVLVINLSIFEARTPRTSTHTT 1581

Query: 62   DMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKLM 121
             ML    S GIG+EASSLE ELWC+PKRSK W ML TS  RSS +RNH KCT  E N L 
Sbjct: 1582 GMLPDMFSRGIGQEASSLEGELWCNPKRSKRWTMLPTSVERSSGIRNHLKCTRCEGNGLS 1641

Query: 122  SRTSGVRPRKTQARIPHT 138
            SRT    P+KT+AR+P T
Sbjct: 1642 SRTLSAHPKKTRARMPRT 1659

[Close]

BLAST of IVF0020670.1 vs. NCBI nr
Match: TYK22521.1 (uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 134 bits (338), Expect = 1.20e-33
Identity = 86/185 (46.49%), Postives = 91/185 (49.19%), Query Frame = 0


Query: 2   LSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSLLLRII-CLLMFGAPNPTNSTHTP 61
           LSSRT G  PKKT AR PQ QFS  G KS  PTVS+L   ++  L +FGAP P  STHTP
Sbjct: 282 LSSRTSGARPKKTRARMPQTQFSRPGPKSDPPTVSTLCSVLVRSLSIFGAPTPRTSTHTP 341

Query: 62  DMLSHTLSY--------------------------------------------------- 121
            ML  T S                                                    
Sbjct: 342 GMLPDTFSERECPRLSFLVLGKLWSPDGFFPLLRIGHKSVDLRGSTPRTSTHTSGMLPDT 401

Query: 122 ---GIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKLMSRTSGV 131
              GIGREASSLE EL CDPK SK W ML T G RSS  RNHWKCTC+E N L SRTSG 
Sbjct: 402 FSGGIGREASSLEGELLCDPKPSKRWPMLPTGGERSSGFRNHWKCTCSEGNGLSSRTSGA 461

[Close]

BLAST of IVF0020670.1 vs. NCBI nr
Match: KAA0061317.1 (hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa] >TYK14265.1 hypothetical protein E5676_scaffold1799G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 115 bits (287), Expect = 1.50e-28
Identity = 59/97 (60.82%), Postives = 66/97 (68.04%), Query Frame = 0


Query: 42  IICLLMFGAPNPTNSTHTPDMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGGR 101
           +I L +F A     STHT  ML H  + GIGREASSLE ELW DPKR K W ML TSG R
Sbjct: 26  VISLSIFEARTLRTSTHTSGMLPHMFTQGIGREASSLEGELWFDPKRFKRWPMLATSGER 85

Query: 102 SSDVRNHWKCTCNERNKLMSRTSGVRPRKTQARIPHT 138
            S VRNHWKCTC+  N+L SRTSGV P KT+ R+  T
Sbjct: 86  LSGVRNHWKCTCSGANRLSSRTSGVCPMKTRPRMSRT 122

[Close]

BLAST of IVF0020670.1 vs. NCBI nr
Match: KAA0066117.1 (mitochondrial intermembrane space import and assembly protein 40 [Cucumis melo var. makuwa])

HSP 1 Score: 116 bits (290), Expect = 2.05e-28
Identity = 61/96 (63.54%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 43  ICLLMFGAPNPTNSTHTPDMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGGRS 102
           +CL M  AP          ML  T S GIGREASSLE ELWCDPKRSK W  L TSG RS
Sbjct: 169 LCLRMEAAPG---------MLPDTFSGGIGREASSLEGELWCDPKRSKRWPKLPTSGERS 228

Query: 103 SDVRNHWKCTCNERNKLMSRTSGVRPRKTQARIPHT 138
           S VRNHWKCTC+E N L SRTSG RP+KT A +P T
Sbjct: 229 SGVRNHWKCTCSEGNGLSSRTSGARPKKTPAGMPRT 255

The following BLAST results are available for this feature:

BLAST of IVF0020670.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0020670.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DIF8	1.1e-74	100.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G0010...	[more]
A0A5A7V5J2	5.3e-32	58.70	Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak...	[more]
A0A5D3DFP2	1.2e-28	46.49	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VGB1	5.9e-23	72.15	Mitochondrial intermembrane space import and assembly protein 40 OS=Cucumis melo...	[more]
A0A5A7V368	1.3e-22	60.82	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0020670.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK23424.1	4.17e-90	100.00	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0062888.1	2.45e-37	58.70	non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw...	[more]
TYK22521.1	1.20e-33	46.49	uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]	[more]
KAA0061317.1	1.50e-28	60.82	hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa] >TYK142...	[more]
KAA0066117.1	2.05e-28	63.54	mitochondrial intermembrane space import and assembly protein 40 [Cucumis melo v...	[more]

BLAST of IVF0020670.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0020670	IVF0020670	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0020670.1-exon	IVF0020670.1-exon-chr04:21888075..21888491	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0020670.1-cds	IVF0020670.1-cds-chr04:21888075..21888491	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0020670.1	IVF0020670.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0046872	metal ion binding