Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATATTGCGACGATGTTGACTACGTGGACGAGGGAGACTCCAGGTACGCGACGACCACCGCTTCAGAAGACATTCAGTATATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGAACTAGCCGAATCGATGTTCACTAATTGGCAGTTGTGTAACGCTTAG
mRNA sequence
ATGACATATTGCGACGATGTTGACTACGTGGACGAGGGAGACTCCAGGTACGCGACGACCACCGCTTCAGAAGACATTCAGTATATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGAACTAGCCGAATCGATGTTCACTAATTGGCAGTTGTGTAACGCTTAG
Coding sequence (CDS)
ATGACATATTGCGACGATGTTGACTACGTGGACGAGGGAGACTCCAGGTACGCGACGACCACCGCTTCAGAAGACATTCAGTATATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGAACTAGCCGAATCGATGTTCACTAATTGGCAGTTGTGTAACGCTTAG
Protein sequence
MTYCDDVDYVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMFTNWQLCNA
Homology
BLAST of IVF0020362 vs. ExPASy TrEMBL
Match:
A0A5D3BY22 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G001930 PE=3 SV=1)
HSP 1 Score: 113.6 bits (283), Expect = 2.6e-22
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 0
Query: 1 MTYCDDVDYVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMFTNWQLCN 55
MTYCDDVDYVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMFTNWQL N
Sbjct: 156 MTYCDDVDYVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMFTNWQLYN 209
BLAST of IVF0020362 vs. ExPASy TrEMBL
Match:
A0A5D3BDZ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00280 PE=4 SV=1)
HSP 1 Score: 104.8 bits (260), Expect = 1.2e-19
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 0
Query: 1 MTYCDDVDYVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMFTNWQLCNA 56
MTYCDD+D VDEGDS YATTTASEDI YIETTNEWSQWRDELAESMFT+WQL NA
Sbjct: 1 MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55
BLAST of IVF0020362 vs. ExPASy TrEMBL
Match:
A0A5A7V4Q8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00240 PE=3 SV=1)
HSP 1 Score: 102.8 bits (255), Expect = 4.6e-19
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 0
Query: 1 MTYCDDVDYVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMFTNWQLCNA 56
MTYCDD+D DEGDS YATTTASEDIQYIETTNEWSQWRD+LAESMFT WQL NA
Sbjct: 53 MTYCDDIDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 107
BLAST of IVF0020362 vs. ExPASy TrEMBL
Match:
A0A5A7TAL2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00880 PE=3 SV=1)
HSP 1 Score: 102.8 bits (255), Expect = 4.6e-19
Identity = 47/55 (85.45%), Postives = 50/55 (90.91%), Query Frame = 0
Query: 1 MTYCDDVDYVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMFTNWQLCNA 56
MTYCDDV+ DEGDS YATTTASEDIQYIETTNEWSQWRD+LA SMFT+WQ CNA
Sbjct: 308 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFCNA 362
BLAST of IVF0020362 vs. ExPASy TrEMBL
Match:
A0A5A7UCL2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G00690 PE=3 SV=1)
HSP 1 Score: 102.8 bits (255), Expect = 4.6e-19
Identity = 47/55 (85.45%), Postives = 50/55 (90.91%), Query Frame = 0
Query: 1 MTYCDDVDYVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMFTNWQLCNA 56
MTYCDDV+ DEGDS YATTTASEDIQYIETTNEWSQWRD+LA SMFT+WQ CNA
Sbjct: 294 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFCNA 348
BLAST of IVF0020362 vs. NCBI nr
Match:
KAA0054051.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 106 bits (264), Expect = 1.04e-28
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 0
Query: 1 MTYCDDVDYVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMFTNWQLCNA 55
MTYCDD+D VDEGDS YATTTASEDI YIETTNEWSQWRDELAESMFT+WQL NA
Sbjct: 1 MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55
BLAST of IVF0020362 vs. NCBI nr
Match:
TYK03086.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 115 bits (288), Expect = 1.53e-28
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 0
Query: 1 MTYCDDVDYVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMFTNWQLCNA 55
MTYCDDVDYVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMFTNWQL N
Sbjct: 156 MTYCDDVDYVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMFTNWQLYNG 210
BLAST of IVF0020362 vs. NCBI nr
Match:
KAA0062284.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 104 bits (259), Expect = 2.52e-27
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 0
Query: 1 MTYCDDVDYVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMFTNWQLCNA 55
MTYCDD+D DEGDS YATTTASEDIQYIETTNEWSQWRD+LAESMFT WQL NA
Sbjct: 53 MTYCDDIDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 107
BLAST of IVF0020362 vs. NCBI nr
Match:
TYK04228.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 101 bits (252), Expect = 7.04e-27
Identity = 47/55 (85.45%), Postives = 49/55 (89.09%), Query Frame = 0
Query: 1 MTYCDDVDYVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMFTNWQLCNA 55
MTYCD+VD DEGDS YATTTASEDIQYIETTNEWSQWRD+LAESMFT WQL N
Sbjct: 1 MTYCDEVDDKDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNT 55
BLAST of IVF0020362 vs. NCBI nr
Match:
TYK22655.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 101 bits (251), Expect = 1.00e-26
Identity = 48/55 (87.27%), Postives = 49/55 (89.09%), Query Frame = 0
Query: 1 MTYCDDVDYVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMFTNWQLCNA 55
MTYCDDVD DE DS YATTTASEDIQYIETTNEWSQWRDEL ESMFT+WQL NA
Sbjct: 1 MTYCDDVDDGDEEDSMYATTTASEDIQYIETTNEWSQWRDELVESMFTDWQLRNA 55
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3BY22 | 2.6e-22 | 98.15 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3BDZ0 | 1.2e-19 | 89.09 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7V4Q8 | 4.6e-19 | 87.27 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7TAL2 | 4.6e-19 | 85.45 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7UCL2 | 4.6e-19 | 85.45 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
KAA0054051.1 | 1.04e-28 | 89.09 | retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon p... | [more] |
TYK03086.1 | 1.53e-28 | 96.36 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0062284.1 | 2.52e-27 | 87.27 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
TYK04228.1 | 7.04e-27 | 85.45 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
TYK22655.1 | 1.00e-26 | 87.27 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |