IVF0020362.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0020362.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr05: 19847763 .. 19847930 (-)
Sequence length	168
RNA-Seq Expression	IVF0020362.1
Synteny	IVF0020362.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATATTGCGACGATGTTGACTACGTGGACGAGGGAGACTCCAGGTACGCGACGACCACCGCTTCAGAAGACATTCAGTATATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGAACTAGCCGAATCGATGTTCACTAATTGGCAGTTGTGTAACGCTTAG

mRNA sequence

ATGACATATTGCGACGATGTTGACTACGTGGACGAGGGAGACTCCAGGTACGCGACGACCACCGCTTCAGAAGACATTCAGTATATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGAACTAGCCGAATCGATGTTCACTAATTGGCAGTTGTGTAACGCTTAG

Coding sequence (CDS)

ATGACATATTGCGACGATGTTGACTACGTGGACGAGGGAGACTCCAGGTACGCGACGACCACCGCTTCAGAAGACATTCAGTATATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGAACTAGCCGAATCGATGTTCACTAATTGGCAGTTGTGTAACGCTTAG

Protein sequence

MTYCDDVDYVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMFTNWQLCNA

Homology

[Close]

BLAST of IVF0020362.1 vs. ExPASy TrEMBL
Match: A0A5D3BY22 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G001930 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.6e-22
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1   MTYCDDVDYVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMFTNWQLCN 55
           MTYCDDVDYVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMFTNWQL N
Sbjct: 156 MTYCDDVDYVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMFTNWQLYN 209

[Close]

BLAST of IVF0020362.1 vs. ExPASy TrEMBL
Match: A0A5D3BDZ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00280 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.2e-19
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 1  MTYCDDVDYVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMFTNWQLCNA 56
          MTYCDD+D VDEGDS YATTTASEDI YIETTNEWSQWRDELAESMFT+WQL NA
Sbjct: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55

[Close]

BLAST of IVF0020362.1 vs. ExPASy TrEMBL
Match: A0A5A7V4Q8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00240 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.6e-19
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 1   MTYCDDVDYVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMFTNWQLCNA 56
           MTYCDD+D  DEGDS YATTTASEDIQYIETTNEWSQWRD+LAESMFT WQL NA
Sbjct: 53  MTYCDDIDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 107

[Close]

BLAST of IVF0020362.1 vs. ExPASy TrEMBL
Match: A0A5A7TAL2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00880 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.6e-19
Identity = 47/55 (85.45%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 1   MTYCDDVDYVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMFTNWQLCNA 56
           MTYCDDV+  DEGDS YATTTASEDIQYIETTNEWSQWRD+LA SMFT+WQ CNA
Sbjct: 308 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFCNA 362

[Close]

BLAST of IVF0020362.1 vs. ExPASy TrEMBL
Match: A0A5A7UCL2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G00690 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.6e-19
Identity = 47/55 (85.45%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 1   MTYCDDVDYVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMFTNWQLCNA 56
           MTYCDDV+  DEGDS YATTTASEDIQYIETTNEWSQWRD+LA SMFT+WQ CNA
Sbjct: 294 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFCNA 348

[Close]

BLAST of IVF0020362.1 vs. NCBI nr
Match: KAA0054051.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 106 bits (264), Expect = 1.04e-28
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 1  MTYCDDVDYVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMFTNWQLCNA 55
          MTYCDD+D VDEGDS YATTTASEDI YIETTNEWSQWRDELAESMFT+WQL NA
Sbjct: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55

[Close]

BLAST of IVF0020362.1 vs. NCBI nr
Match: TYK03086.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 115 bits (288), Expect = 1.53e-28
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1   MTYCDDVDYVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMFTNWQLCNA 55
           MTYCDDVDYVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMFTNWQL N 
Sbjct: 156 MTYCDDVDYVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMFTNWQLYNG 210

[Close]

BLAST of IVF0020362.1 vs. NCBI nr
Match: KAA0062284.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 104 bits (259), Expect = 2.52e-27
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 1   MTYCDDVDYVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMFTNWQLCNA 55
           MTYCDD+D  DEGDS YATTTASEDIQYIETTNEWSQWRD+LAESMFT WQL NA
Sbjct: 53  MTYCDDIDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 107

[Close]

BLAST of IVF0020362.1 vs. NCBI nr
Match: TYK04228.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 101 bits (252), Expect = 7.04e-27
Identity = 47/55 (85.45%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 1  MTYCDDVDYVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMFTNWQLCNA 55
          MTYCD+VD  DEGDS YATTTASEDIQYIETTNEWSQWRD+LAESMFT WQL N 
Sbjct: 1  MTYCDEVDDKDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNT 55

[Close]

BLAST of IVF0020362.1 vs. NCBI nr
Match: TYK22655.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 101 bits (251), Expect = 1.00e-26
Identity = 48/55 (87.27%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 1  MTYCDDVDYVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMFTNWQLCNA 55
          MTYCDDVD  DE DS YATTTASEDIQYIETTNEWSQWRDEL ESMFT+WQL NA
Sbjct: 1  MTYCDDVDDGDEEDSMYATTTASEDIQYIETTNEWSQWRDELVESMFTDWQLRNA 55

The following BLAST results are available for this feature:

BLAST of IVF0020362.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0020362.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BY22	2.6e-22	98.15	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BDZ0	1.2e-19	89.09	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V4Q8	4.6e-19	87.27	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TAL2	4.6e-19	85.45	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UCL2	4.6e-19	85.45	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0020362.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054051.1	1.04e-28	89.09	retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon p...	[more]
TYK03086.1	1.53e-28	96.36	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0062284.1	2.52e-27	87.27	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK04228.1	7.04e-27	85.45	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK22655.1	1.00e-26	87.27	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0020362.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0020362	IVF0020362	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0020362.1-exon	IVF0020362.1-exon-chr05:19847763..19847930	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0020362.1-cds	IVF0020362.1-cds-chr05:19847763..19847930	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0020362.1	IVF0020362.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding