Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTAAGGCAAGCAACAAGCGACATCTACAAGAATGGGGTGCTAGAGAAGATGACATACCCTGGTAGCTTCAAGGTACCTTGCTCGATAGACGGAATGGATTTGGGTCATGTTTTATGCGACCTTGGGGCGAGCATCAACTTGATGCCTCTTTCTATCTTCAAGAAATTAAAGATAAAGGAGGTTCAACCAACTCATATGAGGTTTCAACTTGCAGACAGATCCATTACGAATCCTAAGGGTAAGATTGAAGACGTTTTGGTAAAGGTAGACAAATTTCTGTTTTTCGCAGACTTCATCATTCTAGACTACGAAGCTGATGAAGAGGTTCTTATCATCTTAAGGCGGCTGTTCTTGTCAACTGGTCGTGCCCTCACATATATCCACCAAGGGGAGTTGACAGTGTTTTTCAATAACAAGGAAATCAAATTCAATGTTATCAACGCGATGAAGTTCCCTCTTGATGATGAAAGTTGCAACACAATAGAGTCCCTAGTGTGA
mRNA sequence
ATGGCTCTAAGGCAAGCAACAAGCGACATCTACAAGAATGGGGTGCTAGAGAAGATGACATACCCTGGTAGCTTCAAGGTACCTTGCTCGATAGACGGAATGGATTTGGGTCATGTTTTATGCGACCTTGGGGCGAGCATCAACTTGATGCCTCTTTCTATCTTCAAGAAATTAAAGATAAAGGAGGTTCAACCAACTCATATGAGGTTTCAACTTGCAGACAGATCCATTACGAATCCTAAGGGTAAGATTGAAGACGTTTTGGTAAAGGTAGACAAATTTCTGTTTTTCGCAGACTTCATCATTCTAGACTACGAAGCTGATGAAGAGGTTCTTATCATCTTAAGGCGGCTGTTCTTGTCAACTGGTCGTGCCCTCACATATATCCACCAAGGGGAGTTGACAGTGTTTTTCAATAACAAGGAAATCAAATTCAATGTTATCAACGCGATGAAGTTCCCTCTTGATGATGAAAGTTGCAACACAATAGAGTCCCTAGTGTGA
Coding sequence (CDS)
ATGGCTCTAAGGCAAGCAACAAGCGACATCTACAAGAATGGGGTGCTAGAGAAGATGACATACCCTGGTAGCTTCAAGGTACCTTGCTCGATAGACGGAATGGATTTGGGTCATGTTTTATGCGACCTTGGGGCGAGCATCAACTTGATGCCTCTTTCTATCTTCAAGAAATTAAAGATAAAGGAGGTTCAACCAACTCATATGAGGTTTCAACTTGCAGACAGATCCATTACGAATCCTAAGGGTAAGATTGAAGACGTTTTGGTAAAGGTAGACAAATTTCTGTTTTTCGCAGACTTCATCATTCTAGACTACGAAGCTGATGAAGAGGTTCTTATCATCTTAAGGCGGCTGTTCTTGTCAACTGGTCGTGCCCTCACATATATCCACCAAGGGGAGTTGACAGTGTTTTTCAATAACAAGGAAATCAAATTCAATGTTATCAACGCGATGAAGTTCCCTCTTGATGATGAAAGTTGCAACACAATAGAGTCCCTAGTGTGA
Protein sequence
MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKIKEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFLSTGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDDESCNTIESLV
Homology
BLAST of IVF0020087 vs. ExPASy TrEMBL
Match:
A0A1S3BHX3 (uncharacterized protein LOC103490055 OS=Cucumis melo OX=3656 GN=LOC103490055 PE=4 SV=1)
HSP 1 Score: 334.7 bits (857), Expect = 2.2e-88
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0
Query: 1 MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI 60
MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI
Sbjct: 24 MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI 83
Query: 61 KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL 120
KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL
Sbjct: 84 KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL 143
Query: 121 STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDDESCNTIESLV 168
STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDDESCNTIESLV
Sbjct: 144 STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDDESCNTIESLV 190
BLAST of IVF0020087 vs. ExPASy TrEMBL
Match:
A0A5D3BDT2 (RT_RNaseH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00330 PE=4 SV=1)
HSP 1 Score: 319.7 bits (818), Expect = 7.2e-84
Identity = 161/167 (96.41%), Postives = 162/167 (97.01%), Query Frame = 0
Query: 1 MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI 60
MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI
Sbjct: 24 MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI 83
Query: 61 KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL 120
KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL
Sbjct: 84 KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL 143
Query: 121 STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDDESCNTIESLV 168
STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDDES T + V
Sbjct: 144 STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDDESEKTTKPSV 190
BLAST of IVF0020087 vs. ExPASy TrEMBL
Match:
A0A5A7VJ95 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00710 PE=4 SV=1)
HSP 1 Score: 226.5 bits (576), Expect = 8.3e-56
Identity = 118/166 (71.08%), Postives = 135/166 (81.33%), Query Frame = 0
Query: 1 MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI 60
+AL TSDI KNG +KMT SF VPCSI+ MDLGHVLCDLGASINLMPLSIFKKL+I
Sbjct: 102 VALTLETSDILKNGAPKKMTDCRSFTVPCSINNMDLGHVLCDLGASINLMPLSIFKKLEI 161
Query: 61 KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL 120
+EVQP HMR Q DRSI +GKIED+LVKVDKFLF ADFIILDYEA++EV II R FL
Sbjct: 162 EEVQPMHMRLQFVDRSIAKHEGKIEDILVKVDKFLFHADFIILDYEANQEVPIIFGRPFL 221
Query: 121 STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDDESCNTIESL 167
STG AL +HQGELT+ FN+ E+KFNV+NAMKFP DD++ + IESL
Sbjct: 222 STGHALIDVHQGELTMRFND-EVKFNVMNAMKFPTDDKNYSMIESL 266
BLAST of IVF0020087 vs. ExPASy TrEMBL
Match:
A0A1S3CN55 (uncharacterized protein LOC103502805 OS=Cucumis melo OX=3656 GN=LOC103502805 PE=4 SV=1)
HSP 1 Score: 226.5 bits (576), Expect = 8.3e-56
Identity = 118/166 (71.08%), Postives = 135/166 (81.33%), Query Frame = 0
Query: 1 MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI 60
+AL TSDI KNG +KMT SF VPCSI+ MDLGHVLCDLGASINLMPLSIFKKL+I
Sbjct: 13 VALTLETSDILKNGAPKKMTDCRSFTVPCSINNMDLGHVLCDLGASINLMPLSIFKKLEI 72
Query: 61 KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL 120
+EVQP HMR Q DRSI +GKIED+LVKVDKFLF ADFIILDYEA++EV II R FL
Sbjct: 73 EEVQPMHMRLQFVDRSIAKHEGKIEDILVKVDKFLFHADFIILDYEANQEVPIIFGRPFL 132
Query: 121 STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDDESCNTIESL 167
STG AL +HQGELT+ FN+ E+KFNV+NAMKFP DD++ + IESL
Sbjct: 133 STGHALIDVHQGELTMRFND-EVKFNVMNAMKFPTDDKNYSMIESL 177
BLAST of IVF0020087 vs. ExPASy TrEMBL
Match:
A0A1S3C2F1 (uncharacterized protein LOC103495890 OS=Cucumis melo OX=3656 GN=LOC103495890 PE=4 SV=1)
HSP 1 Score: 204.9 bits (520), Expect = 2.6e-49
Identity = 104/155 (67.10%), Postives = 120/155 (77.42%), Query Frame = 0
Query: 1 MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI 60
+ L QATS+I+KN V +KMTYP SF V CSID MDLGH LC+LGASINLM LSIFKKL +
Sbjct: 33 VTLTQATSNIFKNMVQKKMTYPRSFTVSCSIDDMDLGHTLCNLGASINLMHLSIFKKLGM 92
Query: 61 KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL 120
E QPT M Q DRSIT P+GKI+DVL+KVDKFLF ADFIILDYEAD EV IIL FL
Sbjct: 93 WEAQPTKMVLQFVDRSITRPEGKIDDVLIKVDKFLFLADFIILDYEADREVPIILELSFL 152
Query: 121 STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPL 156
TG AL +HQ ELT+ N+++I FN++NAM PL
Sbjct: 153 RTGHALIDVHQWELTMLLNDQKISFNIVNAMNSPL 187
BLAST of IVF0020087 vs. NCBI nr
Match:
XP_008447648.1 (PREDICTED: uncharacterized protein LOC103490055 [Cucumis melo])
HSP 1 Score: 332 bits (851), Expect = 2.29e-114
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0
Query: 1 MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI 60
MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI
Sbjct: 24 MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI 83
Query: 61 KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL 120
KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL
Sbjct: 84 KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL 143
Query: 121 STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDDESCNTIESLV 167
STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDDESCNTIESLV
Sbjct: 144 STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDDESCNTIESLV 190
BLAST of IVF0020087 vs. NCBI nr
Match:
KAA0037872.1 (uncharacterized protein E6C27_scaffold36G00360 [Cucumis melo var. makuwa] >TYJ98010.1 uncharacterized protein E5676_scaffold487G00330 [Cucumis melo var. makuwa])
HSP 1 Score: 317 bits (812), Expect = 4.63e-104
Identity = 161/167 (96.41%), Postives = 162/167 (97.01%), Query Frame = 0
Query: 1 MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI 60
MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI
Sbjct: 24 MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI 83
Query: 61 KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL 120
KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL
Sbjct: 84 KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL 143
Query: 121 STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDDESCNTIESLV 167
STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDDES T + V
Sbjct: 144 STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDDESEKTTKPSV 190
BLAST of IVF0020087 vs. NCBI nr
Match:
XP_008465121.1 (PREDICTED: uncharacterized protein LOC103502805 [Cucumis melo])
HSP 1 Score: 224 bits (570), Expect = 2.08e-71
Identity = 118/166 (71.08%), Postives = 135/166 (81.33%), Query Frame = 0
Query: 1 MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI 60
+AL TSDI KNG +KMT SF VPCSI+ MDLGHVLCDLGASINLMPLSIFKKL+I
Sbjct: 13 VALTLETSDILKNGAPKKMTDCRSFTVPCSINNMDLGHVLCDLGASINLMPLSIFKKLEI 72
Query: 61 KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL 120
+EVQP HMR Q DRSI +GKIED+LVKVDKFLF ADFIILDYEA++EV II R FL
Sbjct: 73 EEVQPMHMRLQFVDRSIAKHEGKIEDILVKVDKFLFHADFIILDYEANQEVPIIFGRPFL 132
Query: 121 STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDDESCNTIESL 166
STG AL +HQGELT+ FN+ E+KFNV+NAMKFP DD++ + IESL
Sbjct: 133 STGHALIDVHQGELTMRFND-EVKFNVMNAMKFPTDDKNYSMIESL 177
BLAST of IVF0020087 vs. NCBI nr
Match:
KAA0067858.1 (uncharacterized protein E6C27_scaffold2484G00710 [Cucumis melo var. makuwa])
HSP 1 Score: 224 bits (570), Expect = 2.47e-68
Identity = 118/166 (71.08%), Postives = 135/166 (81.33%), Query Frame = 0
Query: 1 MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI 60
+AL TSDI KNG +KMT SF VPCSI+ MDLGHVLCDLGASINLMPLSIFKKL+I
Sbjct: 102 VALTLETSDILKNGAPKKMTDCRSFTVPCSINNMDLGHVLCDLGASINLMPLSIFKKLEI 161
Query: 61 KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL 120
+EVQP HMR Q DRSI +GKIED+LVKVDKFLF ADFIILDYEA++EV II R FL
Sbjct: 162 EEVQPMHMRLQFVDRSIAKHEGKIEDILVKVDKFLFHADFIILDYEANQEVPIIFGRPFL 221
Query: 121 STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDDESCNTIESL 166
STG AL +HQGELT+ FN+ E+KFNV+NAMKFP DD++ + IESL
Sbjct: 222 STGHALIDVHQGELTMRFND-EVKFNVMNAMKFPTDDKNYSMIESL 266
BLAST of IVF0020087 vs. NCBI nr
Match:
XP_008455795.1 (PREDICTED: uncharacterized protein LOC103495890 [Cucumis melo])
HSP 1 Score: 202 bits (514), Expect = 8.16e-63
Identity = 104/155 (67.10%), Postives = 120/155 (77.42%), Query Frame = 0
Query: 1 MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI 60
+ L QATS+I+KN V +KMTYP SF V CSID MDLGH LC+LGASINLM LSIFKKL +
Sbjct: 33 VTLTQATSNIFKNMVQKKMTYPRSFTVSCSIDDMDLGHTLCNLGASINLMHLSIFKKLGM 92
Query: 61 KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL 120
E QPT M Q DRSIT P+GKI+DVL+KVDKFLF ADFIILDYEAD EV IIL FL
Sbjct: 93 WEAQPTKMVLQFVDRSITRPEGKIDDVLIKVDKFLFLADFIILDYEADREVPIILELSFL 152
Query: 121 STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPL 155
TG AL +HQ ELT+ N+++I FN++NAM PL
Sbjct: 153 RTGHALIDVHQWELTMLLNDQKISFNIVNAMNSPL 187
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A1S3BHX3 | 2.2e-88 | 100.00 | uncharacterized protein LOC103490055 OS=Cucumis melo OX=3656 GN=LOC103490055 PE=... | [more] |
| A0A5D3BDT2 | 7.2e-84 | 96.41 | RT_RNaseH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... | [more] |
| A0A5A7VJ95 | 8.3e-56 | 71.08 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A1S3CN55 | 8.3e-56 | 71.08 | uncharacterized protein LOC103502805 OS=Cucumis melo OX=3656 GN=LOC103502805 PE=... | [more] |
| A0A1S3C2F1 | 2.6e-49 | 67.10 | uncharacterized protein LOC103495890 OS=Cucumis melo OX=3656 GN=LOC103495890 PE=... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_008447648.1 | 2.29e-114 | 100.00 | PREDICTED: uncharacterized protein LOC103490055 [Cucumis melo] | [more] |
| KAA0037872.1 | 4.63e-104 | 96.41 | uncharacterized protein E6C27_scaffold36G00360 [Cucumis melo var. makuwa] >TYJ98... | [more] |
| XP_008465121.1 | 2.08e-71 | 71.08 | PREDICTED: uncharacterized protein LOC103502805 [Cucumis melo] | [more] |
| KAA0067858.1 | 2.47e-68 | 71.08 | uncharacterized protein E6C27_scaffold2484G00710 [Cucumis melo var. makuwa] | [more] |
| XP_008455795.1 | 8.16e-63 | 67.10 | PREDICTED: uncharacterized protein LOC103495890 [Cucumis melo] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
