IVF0020087.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0020087.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RT_RNaseH domain-containing protein
Location	chr04: 11606651 .. 11607154 (+)
Sequence length	504
RNA-Seq Expression	IVF0020087.1
Synteny	IVF0020087.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCTAAGGCAAGCAACAAGCGACATCTACAAGAATGGGGTGCTAGAGAAGATGACATACCCTGGTAGCTTCAAGGTACCTTGCTCGATAGACGGAATGGATTTGGGTCATGTTTTATGCGACCTTGGGGCGAGCATCAACTTGATGCCTCTTTCTATCTTCAAGAAATTAAAGATAAAGGAGGTTCAACCAACTCATATGAGGTTTCAACTTGCAGACAGATCCATTACGAATCCTAAGGGTAAGATTGAAGACGTTTTGGTAAAGGTAGACAAATTTCTGTTTTTCGCAGACTTCATCATTCTAGACTACGAAGCTGATGAAGAGGTTCTTATCATCTTAAGGCGGCTGTTCTTGTCAACTGGTCGTGCCCTCACATATATCCACCAAGGGGAGTTGACAGTGTTTTTCAATAACAAGGAAATCAAATTCAATGTTATCAACGCGATGAAGTTCCCTCTTGATGATGAAAGTTGCAACACAATAGAGTCCCTAGTGTGA

mRNA sequence

ATGGCTCTAAGGCAAGCAACAAGCGACATCTACAAGAATGGGGTGCTAGAGAAGATGACATACCCTGGTAGCTTCAAGGTACCTTGCTCGATAGACGGAATGGATTTGGGTCATGTTTTATGCGACCTTGGGGCGAGCATCAACTTGATGCCTCTTTCTATCTTCAAGAAATTAAAGATAAAGGAGGTTCAACCAACTCATATGAGGTTTCAACTTGCAGACAGATCCATTACGAATCCTAAGGGTAAGATTGAAGACGTTTTGGTAAAGGTAGACAAATTTCTGTTTTTCGCAGACTTCATCATTCTAGACTACGAAGCTGATGAAGAGGTTCTTATCATCTTAAGGCGGCTGTTCTTGTCAACTGGTCGTGCCCTCACATATATCCACCAAGGGGAGTTGACAGTGTTTTTCAATAACAAGGAAATCAAATTCAATGTTATCAACGCGATGAAGTTCCCTCTTGATGATGAAAGTTGCAACACAATAGAGTCCCTAGTGTGA

Coding sequence (CDS)

ATGGCTCTAAGGCAAGCAACAAGCGACATCTACAAGAATGGGGTGCTAGAGAAGATGACATACCCTGGTAGCTTCAAGGTACCTTGCTCGATAGACGGAATGGATTTGGGTCATGTTTTATGCGACCTTGGGGCGAGCATCAACTTGATGCCTCTTTCTATCTTCAAGAAATTAAAGATAAAGGAGGTTCAACCAACTCATATGAGGTTTCAACTTGCAGACAGATCCATTACGAATCCTAAGGGTAAGATTGAAGACGTTTTGGTAAAGGTAGACAAATTTCTGTTTTTCGCAGACTTCATCATTCTAGACTACGAAGCTGATGAAGAGGTTCTTATCATCTTAAGGCGGCTGTTCTTGTCAACTGGTCGTGCCCTCACATATATCCACCAAGGGGAGTTGACAGTGTTTTTCAATAACAAGGAAATCAAATTCAATGTTATCAACGCGATGAAGTTCCCTCTTGATGATGAAAGTTGCAACACAATAGAGTCCCTAGTGTGA

Protein sequence

MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKIKEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFLSTGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDDESCNTIESLV

Homology

[Close]

BLAST of IVF0020087.1 vs. ExPASy TrEMBL
Match: A0A1S3BHX3 (uncharacterized protein LOC103490055 OS=Cucumis melo OX=3656 GN=LOC103490055 PE=4 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 2.2e-88
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI 60
           MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI
Sbjct: 24  MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI 83

Query: 61  KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL 120
           KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL
Sbjct: 84  KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL 143

Query: 121 STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDDESCNTIESLV 168
           STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDDESCNTIESLV
Sbjct: 144 STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDDESCNTIESLV 190

[Close]

BLAST of IVF0020087.1 vs. ExPASy TrEMBL
Match: A0A5D3BDT2 (RT_RNaseH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00330 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 7.2e-84
Identity = 161/167 (96.41%), Postives = 162/167 (97.01%), Query Frame = 0


Query: 1   MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI 60
           MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI
Sbjct: 24  MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI 83

Query: 61  KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL 120
           KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL
Sbjct: 84  KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL 143

Query: 121 STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDDESCNTIESLV 168
           STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDDES  T +  V
Sbjct: 144 STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDDESEKTTKPSV 190

[Close]

BLAST of IVF0020087.1 vs. ExPASy TrEMBL
Match: A0A5A7VJ95 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00710 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 8.3e-56
Identity = 118/166 (71.08%), Postives = 135/166 (81.33%), Query Frame = 0


Query: 1   MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI 60
           +AL   TSDI KNG  +KMT   SF VPCSI+ MDLGHVLCDLGASINLMPLSIFKKL+I
Sbjct: 102 VALTLETSDILKNGAPKKMTDCRSFTVPCSINNMDLGHVLCDLGASINLMPLSIFKKLEI 161

Query: 61  KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL 120
           +EVQP HMR Q  DRSI   +GKIED+LVKVDKFLF ADFIILDYEA++EV II  R FL
Sbjct: 162 EEVQPMHMRLQFVDRSIAKHEGKIEDILVKVDKFLFHADFIILDYEANQEVPIIFGRPFL 221

Query: 121 STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDDESCNTIESL 167
           STG AL  +HQGELT+ FN+ E+KFNV+NAMKFP DD++ + IESL
Sbjct: 222 STGHALIDVHQGELTMRFND-EVKFNVMNAMKFPTDDKNYSMIESL 266

[Close]

BLAST of IVF0020087.1 vs. ExPASy TrEMBL
Match: A0A1S3CN55 (uncharacterized protein LOC103502805 OS=Cucumis melo OX=3656 GN=LOC103502805 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 8.3e-56
Identity = 118/166 (71.08%), Postives = 135/166 (81.33%), Query Frame = 0


Query: 1   MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI 60
           +AL   TSDI KNG  +KMT   SF VPCSI+ MDLGHVLCDLGASINLMPLSIFKKL+I
Sbjct: 13  VALTLETSDILKNGAPKKMTDCRSFTVPCSINNMDLGHVLCDLGASINLMPLSIFKKLEI 72

Query: 61  KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL 120
           +EVQP HMR Q  DRSI   +GKIED+LVKVDKFLF ADFIILDYEA++EV II  R FL
Sbjct: 73  EEVQPMHMRLQFVDRSIAKHEGKIEDILVKVDKFLFHADFIILDYEANQEVPIIFGRPFL 132

Query: 121 STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDDESCNTIESL 167
           STG AL  +HQGELT+ FN+ E+KFNV+NAMKFP DD++ + IESL
Sbjct: 133 STGHALIDVHQGELTMRFND-EVKFNVMNAMKFPTDDKNYSMIESL 177

[Close]

BLAST of IVF0020087.1 vs. ExPASy TrEMBL
Match: A0A1S3C2F1 (uncharacterized protein LOC103495890 OS=Cucumis melo OX=3656 GN=LOC103495890 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.6e-49
Identity = 104/155 (67.10%), Postives = 120/155 (77.42%), Query Frame = 0


Query: 1   MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI 60
           + L QATS+I+KN V +KMTYP SF V CSID MDLGH LC+LGASINLM LSIFKKL +
Sbjct: 33  VTLTQATSNIFKNMVQKKMTYPRSFTVSCSIDDMDLGHTLCNLGASINLMHLSIFKKLGM 92

Query: 61  KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL 120
            E QPT M  Q  DRSIT P+GKI+DVL+KVDKFLF ADFIILDYEAD EV IIL   FL
Sbjct: 93  WEAQPTKMVLQFVDRSITRPEGKIDDVLIKVDKFLFLADFIILDYEADREVPIILELSFL 152

Query: 121 STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPL 156
            TG AL  +HQ ELT+  N+++I FN++NAM  PL
Sbjct: 153 RTGHALIDVHQWELTMLLNDQKISFNIVNAMNSPL 187

[Close]

BLAST of IVF0020087.1 vs. NCBI nr
Match: XP_008447648.1 (PREDICTED: uncharacterized protein LOC103490055 [Cucumis melo])

HSP 1 Score: 332 bits (851), Expect = 2.29e-114
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI 60
           MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI
Sbjct: 24  MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI 83

Query: 61  KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL 120
           KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL
Sbjct: 84  KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL 143

Query: 121 STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDDESCNTIESLV 167
           STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDDESCNTIESLV
Sbjct: 144 STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDDESCNTIESLV 190

[Close]

BLAST of IVF0020087.1 vs. NCBI nr
Match: KAA0037872.1 (uncharacterized protein E6C27_scaffold36G00360 [Cucumis melo var. makuwa] >TYJ98010.1 uncharacterized protein E5676_scaffold487G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 317 bits (812), Expect = 4.63e-104
Identity = 161/167 (96.41%), Postives = 162/167 (97.01%), Query Frame = 0


Query: 1   MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI 60
           MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI
Sbjct: 24  MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI 83

Query: 61  KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL 120
           KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL
Sbjct: 84  KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL 143

Query: 121 STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDDESCNTIESLV 167
           STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDDES  T +  V
Sbjct: 144 STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDDESEKTTKPSV 190

[Close]

BLAST of IVF0020087.1 vs. NCBI nr
Match: XP_008465121.1 (PREDICTED: uncharacterized protein LOC103502805 [Cucumis melo])

HSP 1 Score: 224 bits (570), Expect = 2.08e-71
Identity = 118/166 (71.08%), Postives = 135/166 (81.33%), Query Frame = 0


Query: 1   MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI 60
           +AL   TSDI KNG  +KMT   SF VPCSI+ MDLGHVLCDLGASINLMPLSIFKKL+I
Sbjct: 13  VALTLETSDILKNGAPKKMTDCRSFTVPCSINNMDLGHVLCDLGASINLMPLSIFKKLEI 72

Query: 61  KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL 120
           +EVQP HMR Q  DRSI   +GKIED+LVKVDKFLF ADFIILDYEA++EV II  R FL
Sbjct: 73  EEVQPMHMRLQFVDRSIAKHEGKIEDILVKVDKFLFHADFIILDYEANQEVPIIFGRPFL 132

Query: 121 STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDDESCNTIESL 166
           STG AL  +HQGELT+ FN+ E+KFNV+NAMKFP DD++ + IESL
Sbjct: 133 STGHALIDVHQGELTMRFND-EVKFNVMNAMKFPTDDKNYSMIESL 177

[Close]

BLAST of IVF0020087.1 vs. NCBI nr
Match: KAA0067858.1 (uncharacterized protein E6C27_scaffold2484G00710 [Cucumis melo var. makuwa])

HSP 1 Score: 224 bits (570), Expect = 2.47e-68
Identity = 118/166 (71.08%), Postives = 135/166 (81.33%), Query Frame = 0


Query: 1   MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI 60
           +AL   TSDI KNG  +KMT   SF VPCSI+ MDLGHVLCDLGASINLMPLSIFKKL+I
Sbjct: 102 VALTLETSDILKNGAPKKMTDCRSFTVPCSINNMDLGHVLCDLGASINLMPLSIFKKLEI 161

Query: 61  KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL 120
           +EVQP HMR Q  DRSI   +GKIED+LVKVDKFLF ADFIILDYEA++EV II  R FL
Sbjct: 162 EEVQPMHMRLQFVDRSIAKHEGKIEDILVKVDKFLFHADFIILDYEANQEVPIIFGRPFL 221

Query: 121 STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDDESCNTIESL 166
           STG AL  +HQGELT+ FN+ E+KFNV+NAMKFP DD++ + IESL
Sbjct: 222 STGHALIDVHQGELTMRFND-EVKFNVMNAMKFPTDDKNYSMIESL 266

[Close]

BLAST of IVF0020087.1 vs. NCBI nr
Match: XP_008455795.1 (PREDICTED: uncharacterized protein LOC103495890 [Cucumis melo])

HSP 1 Score: 202 bits (514), Expect = 8.16e-63
Identity = 104/155 (67.10%), Postives = 120/155 (77.42%), Query Frame = 0


Query: 1   MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI 60
           + L QATS+I+KN V +KMTYP SF V CSID MDLGH LC+LGASINLM LSIFKKL +
Sbjct: 33  VTLTQATSNIFKNMVQKKMTYPRSFTVSCSIDDMDLGHTLCNLGASINLMHLSIFKKLGM 92

Query: 61  KEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFL 120
            E QPT M  Q  DRSIT P+GKI+DVL+KVDKFLF ADFIILDYEAD EV IIL   FL
Sbjct: 93  WEAQPTKMVLQFVDRSITRPEGKIDDVLIKVDKFLFLADFIILDYEADREVPIILELSFL 152

Query: 121 STGRALTYIHQGELTVFFNNKEIKFNVINAMKFPL 155
            TG AL  +HQ ELT+  N+++I FN++NAM  PL
Sbjct: 153 RTGHALIDVHQWELTMLLNDQKISFNIVNAMNSPL 187

The following BLAST results are available for this feature:

BLAST of IVF0020087.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0020087.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BHX3	2.2e-88	100.00	uncharacterized protein LOC103490055 OS=Cucumis melo OX=3656 GN=LOC103490055 PE=...	[more]
A0A5D3BDT2	7.2e-84	96.41	RT_RNaseH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7VJ95	8.3e-56	71.08	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3CN55	8.3e-56	71.08	uncharacterized protein LOC103502805 OS=Cucumis melo OX=3656 GN=LOC103502805 PE=...	[more]
A0A1S3C2F1	2.6e-49	67.10	uncharacterized protein LOC103495890 OS=Cucumis melo OX=3656 GN=LOC103495890 PE=...	[more]

BLAST of IVF0020087.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447648.1	2.29e-114	100.00	PREDICTED: uncharacterized protein LOC103490055 [Cucumis melo]	[more]
KAA0037872.1	4.63e-104	96.41	uncharacterized protein E6C27_scaffold36G00360 [Cucumis melo var. makuwa] >TYJ98...	[more]
XP_008465121.1	2.08e-71	71.08	PREDICTED: uncharacterized protein LOC103502805 [Cucumis melo]	[more]
KAA0067858.1	2.47e-68	71.08	uncharacterized protein E6C27_scaffold2484G00710 [Cucumis melo var. makuwa]	[more]
XP_008455795.1	8.16e-63	67.10	PREDICTED: uncharacterized protein LOC103495890 [Cucumis melo]	[more]

BLAST of IVF0020087.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 5..148 e-value: 4.8E-20 score: 73.7
None	No IPR available	PANTHER	PTHR33067	FAMILY NOT NAMED	coord: 15..161
None	No IPR available	PANTHER	PTHR33067:SF28	SUBFAMILY NOT NAMED	coord: 15..161
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 27..120 e-value: 1.90207E-11 score: 55.4204

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0020087	IVF0020087	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0020087.1-exon	IVF0020087.1-exon-chr04:11606651..11607154	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0020087.1-cds	IVF0020087.1-cds-chr04:11606651..11607154	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0020087.1	IVF0020087.1-protein	polypeptide