Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCAATTCAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGACAGAAGAGTTATGCAGATGTGAGGCGGAAGGACCTTGAGTTTGAGATAGGGGATAAGGTGTTCTTAAAGGTAGCACCTATGAAAGGTGTCTTGCGTTTTGAAAGGAGGGGAAAGTTGAGTCCCCGTTTTGTTGGGCCATTTGAGATCTGGAGCGGATTGGCCCTGTAG
mRNA sequence
ATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCAATTCAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGACAGAAGAGTTATGCAGATGTGAGGCGGAAGGACCTTGAGTTTGAGATAGGGGATAAGGTGTTCTTAAAGGTAGCACCTATGAAAGGTGTCTTGCGTTTTGAAAGGAGGGGAAAGTTGAGTCCCCGTTTTGTTGGGCCATTTGAGATCTGGAGCGGATTGGCCCTGTAG
Coding sequence (CDS)
ATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCAATTCAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGACAGAAGAGTTATGCAGATGTGAGGCGGAAGGACCTTGAGTTTGAGATAGGGGATAAGGTGTTCTTAAAGGTAGCACCTATGAAAGGTGTCTTGCGTTTTGAAAGGAGGGGAAAGTTGAGTCCCCGTTTTGTTGGGCCATTTGAGATCTGGAGCGGATTGGCCCTGTAG
Protein sequence
MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEIWSGLAL
Homology
BLAST of IVF0016200 vs. ExPASy TrEMBL
Match:
A0A5A7VDP3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1536G00010 PE=4 SV=1)
HSP 1 Score: 149.1 bits (375), Expect = 8.2e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0
Query: 1 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 60
MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE
Sbjct: 438 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 497
Query: 61 RRGKLSPRFVGPFEI 76
RRGKLSPRFVGPFEI
Sbjct: 498 RRGKLSPRFVGPFEI 512
BLAST of IVF0016200 vs. ExPASy TrEMBL
Match:
A0A5A7SZD6 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G001250 PE=4 SV=1)
HSP 1 Score: 149.1 bits (375), Expect = 8.2e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0
Query: 1 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 60
MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE
Sbjct: 628 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 687
Query: 61 RRGKLSPRFVGPFEI 76
RRGKLSPRFVGPFEI
Sbjct: 688 RRGKLSPRFVGPFEI 702
BLAST of IVF0016200 vs. ExPASy TrEMBL
Match:
A0A5A7U7V9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00950 PE=4 SV=1)
HSP 1 Score: 149.1 bits (375), Expect = 8.2e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0
Query: 1 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 60
MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE
Sbjct: 1268 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 1327
Query: 61 RRGKLSPRFVGPFEI 76
RRGKLSPRFVGPFEI
Sbjct: 1328 RRGKLSPRFVGPFEI 1342
BLAST of IVF0016200 vs. ExPASy TrEMBL
Match:
A0A5A7UL25 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17177G00010 PE=4 SV=1)
HSP 1 Score: 149.1 bits (375), Expect = 8.2e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0
Query: 1 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 60
MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE
Sbjct: 27 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 86
Query: 61 RRGKLSPRFVGPFEI 76
RRGKLSPRFVGPFEI
Sbjct: 87 RRGKLSPRFVGPFEI 101
BLAST of IVF0016200 vs. ExPASy TrEMBL
Match:
A0A5A7USM8 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19747G00010 PE=4 SV=1)
HSP 1 Score: 149.1 bits (375), Expect = 8.2e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0
Query: 1 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 60
MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE
Sbjct: 27 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 86
Query: 61 RRGKLSPRFVGPFEI 76
RRGKLSPRFVGPFEI
Sbjct: 87 RRGKLSPRFVGPFEI 101
BLAST of IVF0016200 vs. NCBI nr
Match:
KAA0051723.1 (pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 144 bits (364), Expect = 1.38e-42
Identity = 73/75 (97.33%), Postives = 75/75 (100.00%), Query Frame = 0
Query: 1 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 60
MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPM+GVLRFE
Sbjct: 1 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFE 60
Query: 61 RRGKLSPRFVGPFEI 75
RRGKLSPRFVGPFEI
Sbjct: 61 RRGKLSPRFVGPFEI 75
BLAST of IVF0016200 vs. NCBI nr
Match:
KAA0055884.1 (pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 146 bits (368), Expect = 3.75e-42
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0
Query: 1 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 60
MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE
Sbjct: 27 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 86
Query: 61 RRGKLSPRFVGPFEI 75
RRGKLSPRFVGPFEI
Sbjct: 87 RRGKLSPRFVGPFEI 101
BLAST of IVF0016200 vs. NCBI nr
Match:
KAA0056505.1 (pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 146 bits (368), Expect = 3.75e-42
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0
Query: 1 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 60
MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE
Sbjct: 27 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 86
Query: 61 RRGKLSPRFVGPFEI 75
RRGKLSPRFVGPFEI
Sbjct: 87 RRGKLSPRFVGPFEI 101
BLAST of IVF0016200 vs. NCBI nr
Match:
KAA0045469.1 (pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 145 bits (365), Expect = 5.01e-42
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 0
Query: 1 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 60
MGPELVQSTNEAIQKIRSR+HTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE
Sbjct: 1 MGPELVQSTNEAIQKIRSRLHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 60
Query: 61 RRGKLSPRFVGPFEI 75
RRGKLSPRFVGPFEI
Sbjct: 61 RRGKLSPRFVGPFEI 75
BLAST of IVF0016200 vs. NCBI nr
Match:
KAA0065715.1 (pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 144 bits (364), Expect = 7.10e-42
Identity = 73/75 (97.33%), Postives = 75/75 (100.00%), Query Frame = 0
Query: 1 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 60
MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPM+GVLRFE
Sbjct: 1 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFE 60
Query: 61 RRGKLSPRFVGPFEI 75
RRGKLSPRFVGPFEI
Sbjct: 61 RRGKLSPRFVGPFEI 75
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7VDP3 | 8.2e-33 | 100.00 | Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1536G00010 P... | [more] |
| A0A5A7SZD6 | 8.2e-33 | 100.00 | Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G001250 PE... | [more] |
| A0A5A7U7V9 | 8.2e-33 | 100.00 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55... | [more] |
| A0A5A7UL25 | 8.2e-33 | 100.00 | Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17177G00010 ... | [more] |
| A0A5A7USM8 | 8.2e-33 | 100.00 | Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19747G00010 ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
